mRNA_S-ischiensis_contig8.19604.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19604.1
Unique NamemRNA_S-ischiensis_contig8.19604.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2482174..2485767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1453
Cds size1386
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19604.1prot_S-ischiensis_contig8.19604.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2482174..2485700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.2476013-CDS-S-ischiensis_contig8:2482173..24824631622817261.2476013-CDS-S-ischiensis_contig8:2482173..2482463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2482174..2482463 -
1695740977.685348-CDS-S-ischiensis_contig8:2482173..24824631695740977.685348-CDS-S-ischiensis_contig8:2482173..2482463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2482174..2482463 -
1622817261.2580926-CDS-S-ischiensis_contig8:2484031..24841561622817261.2580926-CDS-S-ischiensis_contig8:2484031..2484156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2484032..2484156 -
1695740977.698495-CDS-S-ischiensis_contig8:2484031..24841561695740977.698495-CDS-S-ischiensis_contig8:2484031..2484156Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2484032..2484156 -
1622817261.2711203-CDS-S-ischiensis_contig8:2484559..24850281622817261.2711203-CDS-S-ischiensis_contig8:2484559..2485028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2484560..2485028 -
1695740977.7110124-CDS-S-ischiensis_contig8:2484559..24850281695740977.7110124-CDS-S-ischiensis_contig8:2484559..2485028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2484560..2485028 -
1622817261.2829983-CDS-S-ischiensis_contig8:2485198..24857001622817261.2829983-CDS-S-ischiensis_contig8:2485198..2485700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2485199..2485700 -
1695740977.7231052-CDS-S-ischiensis_contig8:2485198..24857001695740977.7231052-CDS-S-ischiensis_contig8:2485198..2485700Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2485199..2485700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.295066-UTR-S-ischiensis_contig8:2485700..24857671622817261.295066-UTR-S-ischiensis_contig8:2485700..2485767Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2485701..2485767 -
1695740977.7351582-UTR-S-ischiensis_contig8:2485700..24857671695740977.7351582-UTR-S-ischiensis_contig8:2485700..2485767Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2485701..2485767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19604.1

>prot_S-ischiensis_contig8.19604.1 ID=prot_S-ischiensis_contig8.19604.1|Name=mRNA_S-ischiensis_contig8.19604.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=462bp
MYGGDGWATGSLGGRGYRGGDLAAREARKRLVAPPLARPEAESNRVPLQA
VAHRSLYIAEPTVADLTRAHAYSTGEPAALFAQQAGVQEAGLRLVRKRQE
IDGCLSKPPPPNDVAIHDIAASGLIGDVVKTAAEVYAEKYGGAQFNDHVA
GALAARLAHEQLLRRLHAKRPDLRPSKGDTPPTTLFWEGEVPSPAAMDYA
RRTAVAAALERAVSKGDVGGIGFNPAAVSSRTHLAVLGRFLTADDLAFLR
DALVDEVASELSRAQLLEALGAGEAPAGEWPAAAEEELRARLHRRDELRE
RAESLRRLEDGEQCQSASALAWDRRALRYFGMGWHRQDVKNMVLLLTTTE
LRERLEELDVNHSTPGTHGEARKLALALRLTETLESGNQAPKLAVRRRAR
EPIAGHCSALAHLPGKRGCICSSGGSSGDGGDSDLRRGFRGARPNKSALA
PSPAARAEVERG
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mRNA from alignment at S-ischiensis_contig8:2482174..2485767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19604.1 ID=mRNA_S-ischiensis_contig8.19604.1|Name=mRNA_S-ischiensis_contig8.19604.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3594bp|location=Sequence derived from alignment at S-ischiensis_contig8:2482174..2485767- (Schizocladia ischiensis KU_0333)
GCCAGATGCTTGTACGGCCCCCGAGCTGATTCGGTCTGCGCTTTGAAGTT
TGAGCGGCGTTGCCGCCATGTACGGTGGCGATGGGTGGGCTACCGGCAGC
CTAGGAGGGCGAGGCTACCGGGGTGGCGACCTGGCAGCACGGGAAGCAAG
GAAGAGGCTTGTCGCGCCCCCTTTGGCACGACCTGAAGCCGAGAGCAACC
GTGTTCCGCTGCAGGCGGTTGCCCACCGTTCGCTTTACATAGCCGAGCCT
ACGGTCGCCGACCTGACGAGGGCCCACGCTTACTCCACCGGGGAACCAGC
CGCGCTCTTCGCCCAACAGGCCGGGGTTCAGGAAGCGGGCCTGCGGCTGG
TGCGGAAGAGACAGGAGATCGATGGGTGCCTGTCGAAGCCCCCTCCCCCC
AACGACGTCGCCATCCACGATATCGCTGCGTCAGGACTGATTGGGGATGT
CGTAAAGACGGCAGCGGAGGTCTACGCCGAAAAGTACGGAGGAGCGCAGT
TCAACGACCATGTGGCGGGAGCGCTGGCGGCCCGCCTGGCGCACGAGCAG
CTCCTTCGCCGACTGCATGGTGTGTTGTTGCTTTTTGCGGCTGTTTTTGT
GCCACGCTAGCGACGTCCGAACAGCTCCGAGTCCCGTGCCCATGAGTGGT
AGGTGCCCACGCGGCCTCGCAAAACCAGGTTGTCTCACTCCGCCTTATGA
CCGCCTCTGCCCGCCCGCCACGCTAACTCTTTTGTGCAGCCAAGCGCCCG
GACTTGAGGCCGTCCAAGGGGGACACCCCCCCAACGACGCTGTTCTGGGA
GGGCGAGGTCCCATCGCCCGCCGCCATGGACTACGCGCGGCGGACTGCGG
TGGCGGCTGCCCTGGAACGGGCCGTGTCGAAAGGCGACGTGGGCGGCATT
GGCTTCAACCCCGCGGCGGTGTCCAGCAGGACGCACCTGGCGGTCCTGGG
CCGGTTCCTCACGGCCGACGACCTGGCGTTTCTGCGCGATGCTCTGGTCG
ACGAGGTCGCCTCGGAGCTCTCCCGCGCCCAGCTGCTCGAGGCGCTCGGG
GCGGGCGAGGCCCCCGCCGGCGAGTGGCCGGCGGCGGCGGAGGAAGAGCT
GAGGGCGAGGCTGCACCGGAGGGACGAGCTGCGGGAAAGGGCCGAGTCCC
TTCGCCGCCTGGAAGATGGGGAGCAGTGTCAGTCGGCGAGCGCGCTGGCG
TGGGACAGGTGCGCTCTACTACCCCCGGGGGGGGCGTGCATGAACTTGTG
CTGGCGGCGTCTGTGCTGGGTGGGACCGTTGCGGGCAAGCAGGGTTGTAC
GAGCGCAAGCGCGAGTTTCTGCGCGACAACTGTTCTGTACACCGTTTGAG
CTGCAAGGTGCTTTTATTTGCAGTGCTTGGGGTGCTTGGGAGTACGTCTA
CTACGGTAGTACTCAGAATGTACTGCTGCAAGTGAGGACATTGGAGCGGC
TGCTGGCCACGTGTCTGGGAACGAGACTGAGGCGCTCCATGTGCACGTGC
GCGCCCTTGTACACTTGCGTGTGCACACACACACGGTCTCTATCTCTTAA
TATTTTGTATGTGCACGTACACACGTACACACACACACGTGCGCGTGACA
CGGCCGCGCAGGCGAGCACTGCGTTACTTTGGGATGGGCTGGCACCGCCA
AGATGTGAAGAACATGGTGCTGCTTCTGACAACCACGGAGCTCAGGGAGC
GGCTGGAGGAGCTTGACGTGAACCACAGCACTCCAGGTGACCTCACTCGC
GCCCGTCATGCGCTGGCCGAATGAGGGCTTTCGAGGTCGATGTTGGCGGC
AGCGCAAATCGTGTGCACTGTACTACTCGAGTACAGTGCATGTACATGTA
CAGTACAGTACAGTACAGTACAGTGCAGGTCATCCAATACGTCCTTGTGC
TGTAGGGTGGCATTCTAGCAATACCTGGGAAGTGCTCGAGCATATATATG
AGTACTGTAGTGCCCTATTTCGTGCACCCTTGTATAAGTGTGCGGTACTC
ACGCTGTGCTTGCTGTAGTCCCAAGACCGTTGTTTTTTTGGAATGTCTGA
GCGCTCTCAAGTAGTTGGGAGAACGAGCTTCAAACAACACGAGTAGCTGA
GGAGTTTCCAAGCCTACGAGTGGTTAGGAGACTATACTTCAAGTACATGT
ACTACAGTACATACAACTGTAGTACTTCGAAGTGCTTCGAAGTGTATGTA
TGTACTCATGCTGTGCTTGCCATAGTCCCGAGACCATTGACACCGCGCCT
CGGCCGACGACTATAGACGGAGAGTTCTTTGCAATAGATGAAATATTGCC
CCTGTTGAGTTGACGAGGACGAGCTCTCTTGGGGCTTCCTCGTGTAGTGC
ACCCCCCCCCCCCTCAATACAATACGGTGCCTGTGCTTTGCTTGTAGAGT
ACCGTATTCGTTGGAGAGATCTTGTCCCCACGGGACAATTTTCGGGGGAG
TATTTCTAGCCGGGAAGGTCCCGAATTGTCCCGAAAACTCTAGAACAGTT
CCCCCAGGTCCTCAGGGAGATTTTTCCGAGTTTCCCGCGCGAATCCGACC
AGTATTCGGCGAGAAAAGTTCTCCCGACATTGGCACGGGGGGGGGCAAAA
TCTCTCCGACGATTACAGTACGCCCCCACGGTCAAGCGGGGGCTGTACTT
GGAATCGGACGTACGAGTACAGTCCTGTTCTGTCTGTACAGTACAGTGGT
GTTTTTGAAGCACATACGATCGCGCAGTGCAGTAGTCGAGCCCTTAGAAC
GAGTCTTGCACTGCCCTGCCCTGTACTGTACTGTACAGTACAGTACAGTG
CTGCACTGTGCTGCACCTATGTAGCGTGAGAGCAGGGTTGGTGTACCACT
GGGATGGAATGCAAGTTTGCGCTTTGCGGTGCACCTGGCTCGTTTTTCCG
TTGCAACCACCACTGCCACGACACCCATCCAATGCATCGCCCCCGTATTG
TCCCCCCGCCGATGCCGCCAACCACCCCATACAATCGGAACCAAATGCCA
CCGCCGCCGCCGCCACCGCCACAGCACCAACACCACCACCACACCACTAC
CAACACACGCCACCACCACCACCACCACCACCACCACCACCACCACCACC
CACCACTACCACCACCACCACCACCACCACCACCACCACCACCACCGCCA
CCACCACCACCACCACCGCCACCACCACCACCACCACCACTGGCTCCATG
ATCCACCACCACCCCTGCCAACATAGGCCACCGGCACCACACCAACACTA
CCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGCTGTCACCACCACCATGCA
ATAGGCACCCACGGAGAGGCACGCAAGCTGGCCCTGGCCCTGCGCCTCAC
AGAGACCCTAGAATCGGGCAATCAAGCGCCAAAGCTCGCCGTTCGTCGAC
GGGCCCGCGAGCCCATCGCCGGGCATTGCAGCGCGCTGGCACACCTTCCA
GGGAAGCGAGGATGTATCTGCAGCAGCGGCGGCAGCAGCGGCGACGGCGG
CGACAGCGACCTGCGCCGTGGTTTCCGCGGTGCTCGGCCGAATAAATCCG
CCCTGGCTCCCTCCCCAGCAGCTCGCGCAGAAGTTGAACGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2482174..2485767-

>mRNA_S-ischiensis_contig8.19604.1 ID=mRNA_S-ischiensis_contig8.19604.1|Name=mRNA_S-ischiensis_contig8.19604.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2772bp|location=Sequence derived from alignment at S-ischiensis_contig8:2482174..2485767- (Schizocladia ischiensis KU_0333)
ATGTACGGTGGCGATGGGTGGGCTACCGGCAGCCTAGGAGGGCGAGGCTA
CCGGGGTGGCGACCTGGCAGCACGGGAAGCAAGGAAGAGGCTTGTCGCGC
CCCCTTTGGCACGACCTGAAGCCGAGAGCAACCGTGTTCCGCTGCAGGCG
GTTGCCCACCGTTCGCTTTACATAGCCGAGCCTACGGTCGCCGACCTGAC
GAGGGCCCACGCTTACTCCACCGGGGAACCAGCCGCGCTCTTCGCCCAAC
AGGCCGGGGTTCAGGAAGCGGGCCTGCGGCTGGTGCGGAAGAGACAGGAG
ATCGATGGGTGCCTGTCGAAGCCCCCTCCCCCCAACGACGTCGCCATCCA
CGATATCGCTGCGTCAGGACTGATTGGGGATGTCGTAAAGACGGCAGCGG
AGGTCTACGCCGAAAAGTACGGAGGAGCGCAGTTCAACGACCATGTGGCG
GGAGCGCTGGCGGCCCGCCTGGCGCACGAGCAGCTCCTTCGCCGACTGCA
TGATGTACGGTGGCGATGGGTGGGCTACCGGCAGCCTAGGAGGGCGAGGC
TACCGGGGTGGCGACCTGGCAGCACGGGAAGCAAGGAAGAGGCTTGTCGC
GCCCCCTTTGGCACGACCTGAAGCCGAGAGCAACCGTGTTCCGCTGCAGG
CGGTTGCCCACCGTTCGCTTTACATAGCCGAGCCTACGGTCGCCGACCTG
ACGAGGGCCCACGCTTACTCCACCGGGGAACCAGCCGCGCTCTTCGCCCA
ACAGGCCGGGGTTCAGGAAGCGGGCCTGCGGCTGGTGCGGAAGAGACAGG
AGATCGATGGGTGCCTGTCGAAGCCCCCTCCCCCCAACGACGTCGCCATC
CACGATATCGCTGCGTCAGGACTGATTGGGGATGTCGTAAAGACGGCAGC
GGAGGTCTACGCCGAAAAGTACGGAGGAGCGCAGTTCAACGACCATGTGG
CGGGAGCGCTGGCGGCCCGCCTGGCGCACGAGCAGCTCCTTCGCCGACTG
CATGCCAAGCGCCCGGACTTGAGGCCGTCCAAGGGGGACACCCCCCCAAC
GACGCTGTTCTGGGAGGGCGAGGTCCCATCGCCCGCCGCCATGGACTACG
CGCGGCGGACTGCGGTGGCGGCTGCCCTGGAACGGGCCGTGTCGAAAGGC
GACGTGGGCGGCATTGGCTTCAACCCCGCGGCGGTGTCCAGCAGGACGCA
CCTGGCGGTCCTGGGCCGGTTCCTCACGGCCGACGACCTGGCGTTTCTGC
GCGATGCTCTGGTCGACGAGGTCGCCTCGGAGCTCTCCCGCGCCCAGCTG
CTCGAGGCGCTCGGGGCGGGCGAGGCCCCCGCCGGCGAGTGGCCGGCGGC
GGCGGAGGAAGAGCTGAGGGCGAGGCTGCACCGGAGGGACGAGCTGCGGG
AAAGGGCCGAGTCCCTTCGCCGCCTGGAAGATGGGGAGCAGTGTCAGTCG
GCGAGCGCGCTGGCGTGGGACAGCCAAGCGCCCGGACTTGAGGCCGTCCA
AGGGGGACACCCCCCCAACGACGCTGTTCTGGGAGGGCGAGGTCCCATCG
CCCGCCGCCATGGACTACGCGCGGCGGACTGCGGTGGCGGCTGCCCTGGA
ACGGGCCGTGTCGAAAGGCGACGTGGGCGGCATTGGCTTCAACCCCGCGG
CGGTGTCCAGCAGGACGCACCTGGCGGTCCTGGGCCGGTTCCTCACGGCC
GACGACCTGGCGTTTCTGCGCGATGCTCTGGTCGACGAGGTCGCCTCGGA
GCTCTCCCGCGCCCAGCTGCTCGAGGCGCTCGGGGCGGGCGAGGCCCCCG
CCGGCGAGTGGCCGGCGGCGGCGGAGGAAGAGCTGAGGGCGAGGCTGCAC
CGGAGGGACGAGCTGCGGGAAAGGGCCGAGTCCCTTCGCCGCCTGGAAGA
TGGGGAGCAGTGTCAGTCGGCGAGCGCGCTGGCGTGGGACAGGCGAGCAC
TGCGTTACTTTGGGATGGGCTGGCACCGCCAAGATGTGAAGAACATGGTG
CTGCTTCTGACAACCACGGAGCTCAGGGAGCGGCTGGAGGAGCTTGACGT
GAACCACAGCACTCCAGGCGAGCACTGCGTTACTTTGGGATGGGCTGGCA
CCGCCAAGATGTGAAGAACATGGTGCTGCTTCTGACAACCACGGAGCTCA
GGGAGCGGCTGGAGGAGCTTGACGTGAACCACAGCACTCCAGGCACCCAC
GGAGAGGCACGCAAGCTGGCCCTGGCCCTGCGCCTCACAGAGACCCTAGA
ATCGGGCAATCAAGCGCCAAAGCTCGCCGTTCGTCGACGGGCCCGCGAGC
CCATCGCCGGGCATTGCAGCGCGCTGGCACACCTTCCAGGGAAGCGAGGA
TGTATCTGCAGCAGCGGCGGCAGCAGCGGCGACGGCGGCGACAGCGACCT
GCGCCGTGGTTTCCGCGGTGCTCGGCCGAATAAATCCGCCCTGGCTCCCT
CCCCAGCAGCTCGCGCAGAAGTTGAACGCGGCGCACCCACGGAGAGGCAC
GCAAGCTGGCCCTGGCCCTGCGCCTCACAGAGACCCTAGAATCGGGCAAT
CAAGCGCCAAAGCTCGCCGTTCGTCGACGGGCCCGCGAGCCCATCGCCGG
GCATTGCAGCGCGCTGGCACACCTTCCAGGGAAGCGAGGATGTATCTGCA
GCAGCGGCGGCAGCAGCGGCGACGGCGGCGACAGCGACCTGCGCCGTGGT
TTCCGCGGTGCTCGGCCGAATAAATCCGCCCTGGCTCCCTCCCCAGCAGC
TCGCGCAGAAGTTGAACGCGGC
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