mRNA_S-ischiensis_contig8.19598.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19598.1
Unique NamemRNA_S-ischiensis_contig8.19598.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Match: A0A835Z8Q7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.170e-34
Identity = 75/156 (48.08%), Postives = 91/156 (58.33%), Query Frame = 1 
Query:   37 LPPLVGASMTRCDPSALLGDGSGWPLNTWRPGEGSNFSVRTKGYIRTRVKEPSERALYDLVAMDAYQSPCRIENLGSKLRGLPGLAGALGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLPAQSPPLSSPGDGPTIHVVFYFRASDYLLDAIKAW 504
            LPP VGAS  R D           P N W PG+ + F VRTKGY ++R K PS  ALYDL AMD Y SP RI ++ S +RGL  L   +              PPTGHPDIP+LF++N QLP  +PPLSS GDGPTIHV  +  AS+    A++ W
Sbjct:  208 LPPRVGASYARNDAPEQA------PCNRWSPGDATGFCVRTKGYCKSREKGPSLAALYDLKAMDCYHSPYRINDIKSHVRGLDALLAGV--------------PPTGHPDIPSLFIINVQLPNVAPPLSSQGDGPTIHVTMFMVASE----ALRQW 339
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BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Match: A0A6S9LM18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LM18_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 2.040e-9
Identity = 50/169 (29.59%), Postives = 72/169 (42.60%), Query Frame = 1 
Query:   37 LPPLVGASMTRCDPSALLGDGSGWPLN------TWRPGEGSNFSVRTKGYIRTRVKEPSERALYDLVAMDAYQSPCRIEN--LGSKLRGLPGLAGALGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLP------AQSPPLSSPG-DGPTIHVVFYFRASDYLLDAIK 498
            LPP+  A             GS +P N      +W P     F VR  GY  T  K PS  A Y+ + +D +++P R E   +   LR  P                      +GHPD+P++FVVNCQ+P        SP   +P  DGP   +VF+F  ++   D ++
Sbjct:   86 LPPVSDAGTVEA--------GSTFPRNGEDEEHSWEPSPADMFRVRQPGYSSTGQKAPSGPAFYETLRVDTFRTPERREGRLVPRTLRPCPHTV------------------ESGHPDVPSVFVVNCQIPNIDGAVVHSPFNKNPEYDGPCFQIVFHFGITEQTRDWLR 228
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BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Match: A0A7S4CZC7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CZC7_9EUGL)

HSP 1 Score: 61.2 bits (147), Expect = 8.850e-8
Identity = 43/141 (30.50%), Postives = 65/141 (46.10%), Query Frame = 1 
Query:  121 WRPGEGSNFSVRTKGYIRTRVKEPSERALYDLVAMDAYQSPCRIENLGSKLRGLPGLAGALGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLPAQSPPL--SSPGDGPTIHVVFYFRASDYLLD---------AIKAWKV 510
            W      +F VR+ GY  +++KEPS  A+Y++VA+DAYQSP ++ +    +              LP  D            +P   V+N  +P  +P L  S+ GDG +  VV Y R ++  LD         A+K WK 
Sbjct:   28 WSHAPAESFQVRSLGYKTSQMKEPSGPAIYEMVAVDAYQSPKKVPHFAQYID-------------LPTDD---------GLGLPYNLVINLMVPRYAPNLVWSAAGDGESWCVVLYCRLTEDALDLLRKNEPSPALKLWKA 146
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BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Match: A0A7S0NZH2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZH2_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 8.520e-7
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 1 
Query:  109 PLNTWRPGEGSNFSVRT-KGYIRTRVKEPSERALYDLVAMDAYQSPCRIENLGSKLRGLPGLAGALGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLPAQSPPL-SSPGDGPTIHVVFYFRASDYLLDAIKA 501
            P  +W  G+ + F+VR    Y R  +K PS  ALY+L+A+D +++PC  E+L   ++ LP  AG   GGG   G             +P + +V+   P  +P L     +G T+  VFYF  +     A +A
Sbjct:  463 PTVSWSAGDATAFNVRCGPDYPRRGLKAPSASALYELLAVDVFRTPCWTEHLARHVQ-LPSPAG---GGGAAHGH------------LPPIIIVHVLAPVDAPALIGGTPNGETVSCVFYFGCTPAAQAASRA 579
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BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Match: A0A7S4HKE9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HKE9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.290e-6
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:   94 DGSGWPLNTWRPGEGSNFSVRTKGYIRTRVKEPSERALYDLVAMDAYQSPCRIENLGSKLRGLPGLAGALGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLPAQSPPLSSPGD---GPTIHVVFYFR 468
            D +G  +  W+P  GS F VR+ GY+RT+ K  +   LY LVA+DA++S  R  N+  +++ LP +            D GS +     PDI   FVV+  +P ++P +  P D   G T+ + +  R
Sbjct:  901 DTTGKRVCPWQPLPGSEFQVRSHGYLRTKKKISAPGELYKLVAVDAFESGSRYPNMADRVQ-LPKVQ---------FDDDGSKN--WHSPDI---FVVSLSIPTEAPKMGRPTDDGFGYTVTMYYVMR 1013
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z8Q7_9STRA2.170e-3448.08EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A6S9LM18_HETAK2.040e-929.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4CZC7_9EUGL8.850e-830.50Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0NZH2_9EUKA8.520e-731.58Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S4HKE9_9STRA2.290e-632.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2409640..2411376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue8.1e-20
Seed eggNOG ortholog2880.D7FTZ3
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1336
Ec32 orthologEc-11_003360.1
Exons3
Model size582
Cds size582
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19598.1prot_S-ischiensis_contig8.19598.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2409640..2411376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817290.9365857-CDS-S-ischiensis_contig8:2409639..24099231622817290.9365857-CDS-S-ischiensis_contig8:2409639..2409923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2409640..2409923 -
1695741000.4327166-CDS-S-ischiensis_contig8:2409639..24099231695741000.4327166-CDS-S-ischiensis_contig8:2409639..2409923Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2409640..2409923 -
1622817291.004839-CDS-S-ischiensis_contig8:2410446..24105801622817291.004839-CDS-S-ischiensis_contig8:2410446..2410580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2410447..2410580 -
1695741000.446582-CDS-S-ischiensis_contig8:2410446..24105801695741000.446582-CDS-S-ischiensis_contig8:2410446..2410580Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2410447..2410580 -
1622817291.0157628-CDS-S-ischiensis_contig8:2411212..24113761622817291.0157628-CDS-S-ischiensis_contig8:2411212..2411376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2411213..2411376 -
1695741000.4565432-CDS-S-ischiensis_contig8:2411212..24113761695741000.4565432-CDS-S-ischiensis_contig8:2411212..2411376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2411213..2411376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19598.1

>prot_S-ischiensis_contig8.19598.1 ID=prot_S-ischiensis_contig8.19598.1|Name=mRNA_S-ischiensis_contig8.19598.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
EGGWEACAVDPTLPPLVGASMTRCDPSALLGDGSGWPLNTWRPGEGSNFS
VRTKGYIRTRVKEPSERALYDLVAMDAYQSPCRIENLGSKLRGLPGLAGA
LGGGGLPEGDPGSSSPPTGHPDIPALFVVNCQLPAQSPPLSSPGDGPTIH
VVFYFRASDYLLDAIKAWKVSKAGDGNRAENGEGGGGSGGAELR
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mRNA from alignment at S-ischiensis_contig8:2409640..2411376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19598.1 ID=mRNA_S-ischiensis_contig8.19598.1|Name=mRNA_S-ischiensis_contig8.19598.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1737bp|location=Sequence derived from alignment at S-ischiensis_contig8:2409640..2411376- (Schizocladia ischiensis KU_0333)
GAGGGAGGTTGGGAGGCGTGTGCGGTTGATCCGACGCTCCCGCCGTTGGT
GGGGGCGTCGATGACGCGGTGCGATCCCTCGGCATTGCTGGGGGATGGGT
CTGGCTGGCCGTTGAACACGTGGAGGCCTGGGGAAGGGAGCAACTTTTCC
GTGCGTACGAAGGGGTGAGTTATGCAAATGCCATGTCTTTGAATCAGGTA
TCCATGTACTGTAGTTGACGATGCTTTTTGCGACGTGCTGGCCGTCGGTT
CACCACGTGCGAGGGTGCGAGTCTCATCCGGTTTGCGACCTTTTGCATTT
ACCGCCAAGTACATCGTTTGCTCCTGAAGTCGTGTGCACTCTTTTTGGCG
GTGGTGCTTCGCGGCCCGTGCGAGGGAAGGCGTGGCCGAGAGAGCAGGCC
CCTCTTGTGAAACAAAAACTCGTGGAACATGGGACAATGTTTAGTGTGTT
GCTTATCCCATGATCTCTTATATACACTGGCCAGAGGAAGGAAAATCTCC
TGCCCATGCCACCCCCCCCCCCACCCTCTTCTCCTCACTCCTGCCTCCCA
CCCCTTTCTCTCTGCCCCTCTCCCTCTCATGCTCTGTGTTCTCCCTCTCC
CCTGCTCCCCCCCCCCCTCTCTGTCCCCCTTTCCTCGATCTGCTCTCTCT
CTCTCTCTGTCTCTCTCTCCCTCTCTCTCTCCCTCTCCCTCTCCCTCTCT
CTCTGTGCCGCTCTCCATCTCCCTCCTTCTCCCATGCTGGCATCCTCTCC
CGCGTGCCTTTGTACCTGCCTGTGTCCCCCCCCCCCGCCCCATCAGATAC
ATCCGGACCAGGGTCAAGGAGCCTTCGGAGCGAGCGCTGTATGACCTGGT
GGCGATGGATGCCTACCAAAGCCCGTGCCGGATCGAAAATCTGGGCTCCA
AGCTCCGTGGCCTTCCCGGCCTGGCAGGAGGTCAGACTCTACATTGTACT
CGGTGCATATACATGTATATGTATGTGCTCACGTTGTGCTTGCCGTAGTC
CCGAGAACATTGACCACGTGCCTCGGTCGAGACGGAGCAGGACCCCTCCC
TCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCACCCACCCGCATATGC
GGAGGGGTGGCCAAGTCCATATACTTCGTATGTGCTAACTCACGTACCGT
ACCAGTCGTTTTGTTTCGGAGGACGCGCACGAAACCGTGGCACAACAACG
GCCATAAGGAGAAACATGCAGGGCACGAGCGGAATGCGTTTGAACTGGAT
CATGGGACTTGCGAAATACTTCGAAGGAAGTAATTCGAAGTACTTCTTAA
TAGAGTGCGACGGGCGAGACCCTGACCCCCAATCGCCCCAACACCAACCA
ACCCGGCGAACCCCCCGACGGCCCCTACCCTCCCCTGCCTTGCGCCGACA
CCGCCCGGCCACCTCTACCGGAAACCCGGCTCTCTGCGCCCGTCTGCGTG
CAGCGCTGGGAGGAGGAGGATTGCCAGAGGGAGACCCTGGCAGCAGCAGC
CCCCCCACCGGCCACCCAGACATCCCCGCCCTTTTTGTGGTCAACTGCCA
GCTCCCCGCCCAGTCCCCGCCCCTCTCTTCCCCCGGGGACGGCCCCACCA
TCCACGTTGTTTTCTACTTCCGGGCGTCCGACTACCTCTTGGACGCCATC
AAGGCCTGGAAGGTGAGCAAGGCCGGAGACGGGAACAGGGCGGAAAATGG
CGAGGGTGGCGGCGGCAGCGGCGGCGCTGAGCTCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2409640..2411376-

>mRNA_S-ischiensis_contig8.19598.1 ID=mRNA_S-ischiensis_contig8.19598.1|Name=mRNA_S-ischiensis_contig8.19598.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig8:2409640..2411376- (Schizocladia ischiensis KU_0333)
GAGGGAGGTTGGGAGGCGTGTGCGGTTGATCCGACGCTCCCGCCGTTGGT
GGGGGCGTCGATGACGCGGTGCGATCCCTCGGCATTGCTGGGGGATGGGT
CTGGCTGGCCGTTGAACACGTGGAGGCCTGGGGAAGGGAGCAACTTTTCC
GTGCGTACGAAGGGGAGGGAGGTTGGGAGGCGTGTGCGGTTGATCCGACG
CTCCCGCCGTTGGTGGGGGCGTCGATGACGCGGTGCGATCCCTCGGCATT
GCTGGGGGATGGGTCTGGCTGGCCGTTGAACACGTGGAGGCCTGGGGAAG
GGAGCAACTTTTCCGTGCGTACGAAGGGATACATCCGGACCAGGGTCAAG
GAGCCTTCGGAGCGAGCGCTGTATGACCTGGTGGCGATGGATGCCTACCA
AAGCCCGTGCCGGATCGAAAATCTGGGCTCCAAGCTCCGTGGCCTTCCCG
GCCTGGCAGGAGATACATCCGGACCAGGGTCAAGGAGCCTTCGGAGCGAG
CGCTGTATGACCTGGTGGCGATGGATGCCTACCAAAGCCCGTGCCGGATC
GAAAATCTGGGCTCCAAGCTCCGTGGCCTTCCCGGCCTGGCAGGAGCGCT
GGGAGGAGGAGGATTGCCAGAGGGAGACCCTGGCAGCAGCAGCCCCCCCA
CCGGCCACCCAGACATCCCCGCCCTTTTTGTGGTCAACTGCCAGCTCCCC
GCCCAGTCCCCGCCCCTCTCTTCCCCCGGGGACGGCCCCACCATCCACGT
TGTTTTCTACTTCCGGGCGTCCGACTACCTCTTGGACGCCATCAAGGCCT
GGAAGGTGAGCAAGGCCGGAGACGGGAACAGGGCGGAAAATGGCGAGGGT
GGCGGCGGCAGCGGCGGCGCTGAGCTCAGGCGCTGGGAGGAGGAGGATTG
CCAGAGGGAGACCCTGGCAGCAGCAGCCCCCCCACCGGCCACCCAGACAT
CCCCGCCCTTTTTGTGGTCAACTGCCAGCTCCCCGCCCAGTCCCCGCCCC
TCTCTTCCCCCGGGGACGGCCCCACCATCCACGTTGTTTTCTACTTCCGG
GCGTCCGACTACCTCTTGGACGCCATCAAGGCCTGGAAGGTGAGCAAGGC
CGGAGACGGGAACAGGGCGGAAAATGGCGAGGGTGGCGGCGGCAGCGGCG
GCGCTGAGCTCAGG
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