mRNA_S-ischiensis_contig8.19596.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19596.1
Unique NamemRNA_S-ischiensis_contig8.19596.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2398551..2399051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size488
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19596.1prot_S-ischiensis_contig8.19596.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2398763..2399051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.8591778-UTR-S-ischiensis_contig8:2398550..23987621622817260.8591778-UTR-S-ischiensis_contig8:2398550..2398762Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2398551..2398762 -
1695740977.3873444-UTR-S-ischiensis_contig8:2398550..23987621695740977.3873444-UTR-S-ischiensis_contig8:2398550..2398762Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2398551..2398762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.8702419-CDS-S-ischiensis_contig8:2398762..23987851622817260.8702419-CDS-S-ischiensis_contig8:2398762..2398785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2398763..2398785 -
1695740977.4017708-CDS-S-ischiensis_contig8:2398762..23987851695740977.4017708-CDS-S-ischiensis_contig8:2398762..2398785Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2398763..2398785 -
1622817260.8809197-CDS-S-ischiensis_contig8:2398798..23990511622817260.8809197-CDS-S-ischiensis_contig8:2398798..2399051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2398799..2399051 -
1695740977.4126244-CDS-S-ischiensis_contig8:2398798..23990511695740977.4126244-CDS-S-ischiensis_contig8:2398798..2399051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2398799..2399051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19596.1

>prot_S-ischiensis_contig8.19596.1 ID=prot_S-ischiensis_contig8.19596.1|Name=mRNA_S-ischiensis_contig8.19596.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
MRHEYSNTRALQYEYIALTFATLDPWTVQPPGGKHKYSYTRKRERAKEGL
PFWPPEPATVGSHLLNYFPFASSLSTQQVRTIYDSLWFRVQ*
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mRNA from alignment at S-ischiensis_contig8:2398551..2399051-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19596.1 ID=mRNA_S-ischiensis_contig8.19596.1|Name=mRNA_S-ischiensis_contig8.19596.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=501bp|location=Sequence derived from alignment at S-ischiensis_contig8:2398551..2399051- (Schizocladia ischiensis KU_0333)
ATGCGGCACGAGTACTCGAATACTCGAGCACTACAGTACGAGTACATAGC
ACTTACCTTCGCAACCCTTGACCCTTGGACAGTGCAACCCCCAGGGGGAA
AGCACAAGTACTCATACACGCGCAAGCGGGAGCGGGCGAAAGAAGGGCTT
CCGTTTTGGCCCCCGGAACCCGCAACAGTAGGGTCTCACCTTCTTAACTA
TTTTCCATTCGCTTCTTCTCTTTCCACACAACAAGTACGCACAATCTACG
ATTGCACATGTAGAAGCCCTTTGGTTCCGTGTACAATAGGCCTGGGCTCA
GCCAGTGAGAAACACAGCAACTGAGCGAGTGGCAGGCACCGGGTGCGGCA
GCAGGCCGGCTTGCTACGCTCAGTGATGGAATATGTAAGCAAATGAACCT
GTACATCGACCGTACCGATCTTATATCTATCGACAGTCGGTGCGAAGGGC
TTCTGGTGAGGTCCCCACCTTAGGTTGTCGGGACGGGGCCCGGAACTCGC
A
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2398551..2399051-

>mRNA_S-ischiensis_contig8.19596.1 ID=mRNA_S-ischiensis_contig8.19596.1|Name=mRNA_S-ischiensis_contig8.19596.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig8:2398551..2399051- (Schizocladia ischiensis KU_0333)
ATGCGGCACGAGTACTCGAATACTCGAGCACTACAGTACGAGTACATAGC
ACTTACCTTCGCAACCCTTGACCCTTGGACAGTGCAACCCCCAGGGGGAA
AGCACAAGTACTCATACACGCGCAAGCGGGAGCGGGCGAAAGAAGGGCTT
CCGTTTTGGCCCCCGGAACCCGCAACAGTAGGGTCTCACCTTCTTAACTA
TTTTCCATTCGCTTCTTCTCTTTCCACACAACAAGTACGCACAATCTACG
ATTATGCGGCACGAGTACTCGAATACTCGAGCACTACAGTACGAGTACAT
AGCACTTACCTTCGCAACCCTTGACCCTTGGACAGTGCAACCCCCAGGGG
GAAAGCACAAGTACTCATACACGCGCAAGCGGGAGCGGGCGAAAGAAGGG
CTTCCGTTTTGGCCCCCGGAACCCGCAACAGTAGGGTCTCACCTTCTTAA
CTATTTTCCATTCGCTTCTTCTCTTTCCACACAACAAGTACGCACAATCT
ACGATTCCCTTTGGTTCCGTGTACAATAGCCCTTTGGTTCCGTGTACAAT
AG
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