mRNA_S-ischiensis_contig8.19585.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19585.1
Unique NamemRNA_S-ischiensis_contig8.19585.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: UPI0018D9EE45 (alpha-mannosidase 2C1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D9EE45)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  205 SRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSFA----WDD 489
            ++  TLER +KF+SDTY+TDVNLR  ++  +Q  ++I+  +V        R+P HEA+ R        F    VG+ FGP+W+THWF + FA    W D
Sbjct:    9 NKRCTLERAEKFISDTYFTDVNLRGRLYPDKQPVTAIYHCAVED------RIPYHEAITRD-------FTKTEVGRSFGPTWATHWFRIEFAIPKKWSD 94          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A8B7YMX2_ACAPL (Alpha-mannosidase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YMX2_ACAPL)

HSP 1 Score: 73.6 bits (179), Expect = 4.030e-12
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  181 MAGPPVPVSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSF 477
            M G  V  ++  TLER +KF+SDTY+TDVNLR  ++  ++  ++I+  +V        R+P +EAV R        F    +G+ FGP+W+THWF + F
Sbjct:    1 MNGSLVLKNKRCTLERAEKFISDTYFTDVNLRGRLYPDKKPVTAIYHCAVED------RIPYNEAVSRE-------FTKTEIGESFGPTWATHWFRIEF 86          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: UPI001454EB4A (alpha-mannosidase 2C1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454EB4A)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-11
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  205 SRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSFA 480
            SR  TLE+ +KF+SD Y+TDVNLR  ++  +   ++I+  +V        R+P  EA+ +        F    +G+ FGP+WSTHWF + F+
Sbjct:    9 SRRCTLEKAEKFISDAYFTDVNLRGRLYPDKHPVTAIYHCAVED------RIPYQEAITKE-------FTKTEIGKTFGPTWSTHWFRIEFS 87          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A015LCK8_RHIIW (Alpha-mannosidase n=15 Tax=Rhizophagus TaxID=1129544 RepID=A0A015LCK8_RHIIW)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-11
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  181 MAGPPVPVSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASS---IHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLS 474
            M  P   + R IT++R +KF+S  Y++DVNLRS ++  R+ +     +HV+SVP       R+   EAV+       G +  A  G  FGPSWSTHWFH+S
Sbjct:    1 MTLPHTRLVRGITVDRCEKFISRNYYSDVNLRSQLYKDREDSKDYIKLHVYSVPHLK----RITFKEAVK-------GEYKKAERGDHFGPSWSTHWFHIS 90          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A423TZU7_PENVA (Alpha-mannosidase n=4 Tax=Penaeus TaxID=133894 RepID=A0A423TZU7_PENVA)

HSP 1 Score: 70.5 bits (171), Expect = 4.730e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  208 RNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSFA 480
            R  TLER++K++SDTY+TDVNLR  ++  +++ S I  W VP   G   +    + + +        F    VG+ FGP+WSTHWF +  A
Sbjct:   13 RRTTLERLEKYISDTYFTDVNLRGKLYPFKKNISKISHWRVPGGEGSWQQWSFRQMLTQS-------FTPIKVGESFGPTWSTHWFKIEIA 96          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A8C6JQR5_MELUD (Alpha-mann_mid domain-containing protein n=1 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6JQR5_MELUD)

HSP 1 Score: 70.1 bits (170), Expect = 5.940e-11
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  199 PVSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSFA 480
            P  R   LERV+KFLS+TY+TD NLR  + G R   +S+  +  P       R+P  EAVR+        F LA VG  FGP+W T WF +  +
Sbjct:    4 PKHRRTALERVEKFLSETYFTDCNLRGRLFGDRCPPASLSCFQTPR------RIPYDEAVRQE-------FKLAQVGDSFGPTWETCWFKVELS 84          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A397TH56_9GLOM (Alpha-mannosidase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TH56_9GLOM)

HSP 1 Score: 69.7 bits (169), Expect = 8.740e-11
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  202 VSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASS---IHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLS-------------FAWDDMSPG 501
            + R+IT+ER +KFLS  +++DVNL S ++  R+ +     ++V+SVP    D  R+P  EA++         +  A  G  FGPSWSTHWFH++             F WD  + G
Sbjct:    8 IVRDITVERCEKFLSRNFYSDVNLFSQLYKEREDSKKYIELYVYSVP----DLKRIPFEEAIKSK-------YTKAERGDSFGPSWSTHWFHINVKIPGNWKNEEVHFLWDSDNEG 112          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A397UAB1_9GLOM (Alpha-mannosidase n=4 Tax=Gigaspora TaxID=4873 RepID=A0A397UAB1_9GLOM)

HSP 1 Score: 68.2 bits (165), Expect = 2.980e-10
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 1
Query:  202 VSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASS---IHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLS-------------FAWDDMSPG 501
            V+RNIT+ER +KFLS  +++DVNL S ++  R  +     + V++VP    D  R+   EAV+         +  A  G  FGPSWSTHWFH++             F WD  S G
Sbjct:    7 VTRNITIERCEKFLSRDFFSDVNLYSKLYKNRTGSEEYIKLSVYNVP----DLKRITFEEAVKAD-------YKPAKCGDTFGPSWSTHWFHITVRVLDDWINEEVQFLWDSSSEG 111          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A8C3MGB7_GEOPR (Mannosidase alpha class 2C member 1 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8C3MGB7_GEOPR)

HSP 1 Score: 67.8 bits (164), Expect = 3.810e-10
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  208 RNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHLSFA 480
            R   LERV+KFLSDTY+TD NLR  + G R  A+S+  +  P       R+P  EAV +        F  A VG+ FGP+W T WF +  +
Sbjct:    3 RRTALERVEKFLSDTYFTDCNLRGRLFGDRCPAASLSCFQTPR------RIPYEEAVAQE-------FGPAQVGESFGPTWETCWFKVELS 80          
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Match: A0A1S3HME7_LINUN (Alpha-mannosidase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HME7_LINUN)

HSP 1 Score: 67.8 bits (164), Expect = 4.060e-10
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  205 SRNITLERVDKFLSDTYWTDVNLRSAIHGRRQHASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSWSTHWFHL 471
            ++  TLER+DKF+S  Y+TDVNLR  ++  +   + I    VP    D  RVP H AV       +G +    VG  +GP+WSTHWF L
Sbjct:    8 NKRTTLERIDKFISPIYFTDVNLRGRLYPLKTELTGIKHHKVP----DCARVPYHVAV-------NGEYEEGKVGGSYGPTWSTHWFRL 85          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018D9EE451.360e-1340.40alpha-mannosidase 2C1-like n=1 Tax=Patiria miniata... [more]
A0A8B7YMX2_ACAPL4.030e-1238.38Alpha-mannosidase n=1 Tax=Acanthaster planci TaxID... [more]
UPI001454EB4A4.720e-1136.96alpha-mannosidase 2C1-like n=1 Tax=Asterias rubens... [more]
A0A015LCK8_RHIIW4.720e-1140.59Alpha-mannosidase n=15 Tax=Rhizophagus TaxID=11295... [more]
A0A423TZU7_PENVA4.730e-1138.46Alpha-mannosidase n=4 Tax=Penaeus TaxID=133894 Rep... [more]
A0A8C6JQR5_MELUD5.940e-1141.49Alpha-mann_mid domain-containing protein n=1 Tax=M... [more]
A0A397TH56_9GLOM8.740e-1135.34Alpha-mannosidase n=1 Tax=Glomus cerebriforme TaxI... [more]
A0A397UAB1_9GLOM2.980e-1037.07Alpha-mannosidase n=4 Tax=Gigaspora TaxID=4873 Rep... [more]
A0A8C3MGB7_GEOPR3.810e-1041.76Mannosidase alpha class 2C member 1 n=2 Tax=Passer... [more]
A0A1S3HME7_LINUN4.060e-1041.57Alpha-mannosidase n=2 Tax=Lingula unguis TaxID=757... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2325221..2326191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.9
Seed ortholog evalue6.5e-10
Seed eggNOG ortholog588596.U9V650
Preferred nameAMS1
KEGG koko:K01191
KEGG Pathwayko00511,map00511
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009987,GO:0015923,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0031090,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.-alpha-mannosidase
EggNOG OGs38EQ8@33154,3NW9D@4751,COG0383@1,KOG4342@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size503
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817290.3339272-CDS-S-ischiensis_contig8:2325220..23254431622817290.3339272-CDS-S-ischiensis_contig8:2325220..2325443Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2325221..2325443 -
1695740999.923754-CDS-S-ischiensis_contig8:2325220..23254431695740999.923754-CDS-S-ischiensis_contig8:2325220..2325443Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2325221..2325443 -
1622817290.3451118-CDS-S-ischiensis_contig8:2325913..23261911622817290.3451118-CDS-S-ischiensis_contig8:2325913..2326191Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2325914..2326191 -
1695740999.9417455-CDS-S-ischiensis_contig8:2325913..23261911695740999.9417455-CDS-S-ischiensis_contig8:2325913..2326191Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2325914..2326191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19585.1prot_S-ischiensis_contig8.19585.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2325221..2326191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19585.1

>prot_S-ischiensis_contig8.19585.1 ID=prot_S-ischiensis_contig8.19585.1|Name=mRNA_S-ischiensis_contig8.19585.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=167bp
DLPQACASRVQTRREKAYSASRSAGGGKGPARTSICCRRRGSGSLHQVET
SEGARPVHVNMAGPPVPVSRNITLERVDKFLSDTYWTDVNLRSAIHGRRQ
HASSIHVWSVPPDVGDGGRVPPHEAVRRHKAGAHGGFVLAAVGQRFGPSW
STHWFHLSFAWDDMSPG
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mRNA from alignment at S-ischiensis_contig8:2325221..2326191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19585.1 ID=mRNA_S-ischiensis_contig8.19585.1|Name=mRNA_S-ischiensis_contig8.19585.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=971bp|location=Sequence derived from alignment at S-ischiensis_contig8:2325221..2326191- (Schizocladia ischiensis KU_0333)
GACCTCCCTCAGGCTTGCGCTTCAAGGGTCCAAACTAGGCGGGAAAAGGC GTACAGCGCCAGCAGATCAGCAGGCGGCGGTAAAGGCCCGGCAAGGACGT CAATTTGCTGTCGTAGGCGCGGATCGGGTTCGCTTCACCAGGTGGAGACC TCTGAAGGGGCACGCCCGGTGCATGTGAACATGGCCGGACCGCCCGTGCC CGTGAGCAGGAATATCACGCTGGAGCGCGTGGACAAGTTCTTGTCGGACA CTTACTGGACGGACGTGAACCTGCGCAGGTACGGCTGCGAGGCAGTTCTT CCAACTTTGGAACAGAGTGCGCATCCACCGCCGCCGTGGACCTACAGTAG CCCGCGCGAAGCCAGTCGTGCCGCGGCCTCACCCCAGCCCGCAACTTTCT GCACCAACTTCCGGTCGCACGCGCACTGCCCGTCTGTTTTTGTTCTCAGC TGCCACTTTGCACTGCCCATCCACCCCCTGACAGCTCCCGTTCCTCGAAT GTGGCGGCCTTGCCTCCTTGTGTGCTGCACTCGTGGTGCCTGCCTTAACG CGTGCCTGACATCGGCCCATGACCCCTGCTCCGTACTCGATCCCTCCTCC GCTACCACCGCTTCGCCTTGTTGCACTGGCGGCCACCTCGTCATTTTGAT GCTTTGCATGCCTTCGACGACCTGTGGCGTGGCATCCTGTGCCGCCGCCG CCGCCGCTGCCCCCTCCGTCCCCCTCTCCCCTTGACGGCCGCGTGCAGCG CCATCCACGGCCGCCGGCAGCATGCCTCCTCCATCCACGTGTGGTCCGTG CCGCCCGACGTCGGCGACGGCGGCCGCGTGCCCCCCCACGAGGCCGTCCG GCGCCACAAGGCCGGCGCCCACGGGGGCTTTGTCCTCGCCGCCGTGGGGC AGCGCTTCGGCCCCTCCTGGAGCACCCACTGGTTCCACCTCTCCTTCGCT TGGGATGACATGTCCCCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2325221..2326191-

>mRNA_S-ischiensis_contig8.19585.1 ID=mRNA_S-ischiensis_contig8.19585.1|Name=mRNA_S-ischiensis_contig8.19585.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1002bp|location=Sequence derived from alignment at S-ischiensis_contig8:2325221..2326191- (Schizocladia ischiensis KU_0333)
GACCTCCCTCAGGCTTGCGCTTCAAGGGTCCAAACTAGGCGGGAAAAGGC
GTACAGCGCCAGCAGATCAGCAGGCGGCGGTAAAGGCCCGGCAAGGACGT
CAATTTGCTGTCGTAGGCGCGGATCGGGTTCGCTTCACCAGGTGGAGACC
TCTGAAGGGGCACGCCCGGTGCATGTGAACATGGCCGGACCGCCCGTGCC
CGTGAGCAGGAATATCACGCTGGAGCGCGTGGACAAGTTCTTGTCGGACA
CTTACTGGACGGACGTGAACCTGCGCAGGACCTCCCTCAGGCTTGCGCTT
CAAGGGTCCAAACTAGGCGGGAAAAGGCGTACAGCGCCAGCAGATCAGCA
GGCGGCGGTAAAGGCCCGGCAAGGACGTCAATTTGCTGTCGTAGGCGCGG
ATCGGGTTCGCTTCACCAGGTGGAGACCTCTGAAGGGGCACGCCCGGTGC
ATGTGAACATGGCCGGACCGCCCGTGCCCGTGAGCAGGAATATCACGCTG
GAGCGCGTGGACAAGTTCTTGTCGGACACTTACTGGACGGACGTGAACCT
GCGCAGCGCCATCCACGGCCGCCGGCAGCATGCCTCCTCCATCCACGTGT
GGTCCGTGCCGCCCGACGTCGGCGACGGCGGCCGCGTGCCCCCCCACGAG
GCCGTCCGGCGCCACAAGGCCGGCGCCCACGGGGGCTTTGTCCTCGCCGC
CGTGGGGCAGCGCTTCGGCCCCTCCTGGAGCACCCACTGGTTCCACCTCT
CCTTCGCTTGGGATGACATGTCCCCCGGGCGCCATCCACGGCCGCCGGCA
GCATGCCTCCTCCATCCACGTGTGGTCCGTGCCGCCCGACGTCGGCGACG
GCGGCCGCGTGCCCCCCCACGAGGCCGTCCGGCGCCACAAGGCCGGCGCC
CACGGGGGCTTTGTCCTCGCCGCCGTGGGGCAGCGCTTCGGCCCCTCCTG
GAGCACCCACTGGTTCCACCTCTCCTTCGCTTGGGATGACATGTCCCCCG
GG
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