mRNA_S-ischiensis_contig8.19584.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19584.1
Unique NamemRNA_S-ischiensis_contig8.19584.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19584.1 vs. uniprot
Match: A7SSJ0_NEMVE (Alpha-mannosidase n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7SSJ0_NEMVE)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-8
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 2 
Query:    2 MAANGISGNGEGGMVKPPSPDLTFELRRAEVVEVYQEGLGLFHDVRILHGLATALPEDSPEGCRALSTANAILNTIDTSNPSSWRHGRNLAK 277
            MAANG+ G G+ G++ PP P   + L  AE+         L  D+ ++  +A  LPE SP    AL TAN I+N  DT +  ++     +A+
Sbjct:  151 MAANGMFGAGQDGLINPPDPARKYSLSMAEIAVFDPLCYQLLTDLNVIIDMAKHLPEGSPRSFDALYTANRIVNACDTKDRRTFEKAHEIAQ 242
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BLAST of mRNA_S-ischiensis_contig8.19584.1 vs. uniprot
Match: A0A0D2U0E2_CAPO3 (Alpha-mannosidase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U0E2_CAPO3)

HSP 1 Score: 56.6 bits (135), Expect = 2.800e-7
Identity = 31/91 (34.07%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:    2 MAANGISGNGEGGMVKPPSPDLTFELRRAEVVEVYQEGLGLFHDVRILHGLATALPEDSPEGCRALSTANAILNTIDTSNPSSWRHGRNLA 274
            MAANG+ G G+ G++ PP+ +  F++   E+    +E   L  DVR L+ L+    ++SP   +A  +AN I N ID  + S++   R +A
Sbjct:  231 MAANGMFGVGDNGLINPPNENRFFDISLCELAVFDRELWLLIQDVRTLYDLSKTFADNSPRKLQAALSANKIANLIDPRDRSTYPAARTVA 321
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A7SSJ0_NEMVE2.300e-834.78Alpha-mannosidase n=3 Tax=Nematostella vectensis T... [more]
A0A0D2U0E2_CAPO32.800e-734.07Alpha-mannosidase n=2 Tax=Capsaspora owczarzaki (s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2322551..2324966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue6.8e-09
Seed eggNOG ortholog52644.XP_010569936.1
Preferred nameMAN2C1
KEGG koko:K01191
KEGG Pathwayko00511,map00511
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005783,GO:0005829,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009987,GO:0012505,GO:0015923,GO:0016052,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0031974,GO:0031981,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.Alpha-mannosidase 2C1
EggNOG OGs38EQ8@33154,3BDUC@33208,3CZPD@33213,48A3W@7711,48WH1@7742,4GMH4@8782,COG0383@1,KOG4342@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelAves
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19584.1prot_S-ischiensis_contig8.19584.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2322551..2324965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817290.2626948-CDS-S-ischiensis_contig8:2322550..23226431622817290.2626948-CDS-S-ischiensis_contig8:2322550..2322643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322551..2322643 -
1695740999.8607972-CDS-S-ischiensis_contig8:2322550..23226431695740999.8607972-CDS-S-ischiensis_contig8:2322550..2322643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322551..2322643 -
1622817290.2760782-CDS-S-ischiensis_contig8:2322992..23230851622817290.2760782-CDS-S-ischiensis_contig8:2322992..2323085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322993..2323085 -
1695740999.8772807-CDS-S-ischiensis_contig8:2322992..23230851695740999.8772807-CDS-S-ischiensis_contig8:2322992..2323085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2322993..2323085 -
1622817290.2871668-CDS-S-ischiensis_contig8:2324875..23249651622817290.2871668-CDS-S-ischiensis_contig8:2324875..2324965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2324876..2324965 -
1695740999.8926404-CDS-S-ischiensis_contig8:2324875..23249651695740999.8926404-CDS-S-ischiensis_contig8:2324875..2324965Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2324876..2324965 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817290.299283-UTR-S-ischiensis_contig8:2324965..23249661622817290.299283-UTR-S-ischiensis_contig8:2324965..2324966Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2324966..2324966 -
1695740999.9064643-UTR-S-ischiensis_contig8:2324965..23249661695740999.9064643-UTR-S-ischiensis_contig8:2324965..2324966Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2324966..2324966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19584.1

>prot_S-ischiensis_contig8.19584.1 ID=prot_S-ischiensis_contig8.19584.1|Name=mRNA_S-ischiensis_contig8.19584.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
MAANGISGNGEGGMVKPPSPDLTFELRRAEVVEVYQEGLGLFHDVRILHG
LATALPEDSPEGCRALSTANAILNTIDTSNPSSWRHGRNLAK
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mRNA from alignment at S-ischiensis_contig8:2322551..2324966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19584.1 ID=mRNA_S-ischiensis_contig8.19584.1|Name=mRNA_S-ischiensis_contig8.19584.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2416bp|location=Sequence derived from alignment at S-ischiensis_contig8:2322551..2324966- (Schizocladia ischiensis KU_0333)
GATGGCGGCCAATGGTATTTCGGGGAACGGCGAGGGCGGGATGGTGAAGC
CCCCGAGCCCGGACCTGACGTTCGAGCTCAGGAGGGCGGAGGTGAGACGA
GGGTGACTGACCTCCTCCCCCGCTCAGGCTGAATCTGTGTATGTTGTCGC
TCGCTTTGAAGCGCCCGCTTTTTGCTGCAAAGCAGTAGGCAGTAGTGCCA
GGGCTGTTGGGGGGCTTGTTTTTCACCTGGAACGGGAAGGCTCCACCGAT
TGGGGACCCCAGCCCAGGAACGGCAAGTATGTGGTTTGTCCGTGCACCGA
CGGCCTGTGACACATCGTGAATTCGGAAATATCCGGCGAAATTGAAGGCG
CTTGCGTGCTCGCCAATCAGTTTGTGGTTGAGGTCCTGTTTCGGTTGTGT
GCACAACGGGGCCGACGTGCATAGGAATGCGGCCCCCCGCAGGCCCGAGG
CGCGCGAGATTTCGTGTATCTTCTTCGTGCATGTGTTTCACGCCCGTCAC
TCGGCAGTGCAATGGTAGGTACAGCACTTCAAAGTATCATGGAGTGCAGC
AAAGTGTGCGTGCTACGTCACGGTAGCAGTACAGCAGTACGTGCAGTACT
GTACAGCGCGGCACCTGTCACTCAAAACTGCTCGCGTTGTGCTTGGAAGT
ACTGCGGTGGGACTCGCGCTGACCGGCAGCAAGTGGCAGCCGTGATACTT
ACGGTACGTGCCTACCTTGTGCACGTTTCCAGGCAGCAAAGAGGTTGTAC
GGTGCTTTTCTACTGTAGTTGCCACTGTACAAGTACAGCAAGCCCCAAGT
TTTGAGGCCTGTTGGCAATTCCCGCAAGGTTATGTCGCGAGACAAGTACG
CCAATGAGTACTCTACATACTTCGAGGTATACCACTTACGTACTGTAGTA
GTTGGGGAGACTTGAGTTCCGAGGAGCGAAGTAGTTAGAGGATTGAGTTT
CTGGATTCCCAAGTAGTTACGAACAATCAATCCGCTGATTGGCCAGCTGG
GTGGGGCGCACCGGAAGTACTTCCAGGTGCTTTCTGAAAGATAGCCTCGC
GCGTTGCCAGGCGTTTTCAGCCAATGCTATTGCAAACACAGACTGAAAAC
TACTACAGTACTGACTGATCGTACAGCATTTGGCCGGCCTCCAGGAGTGC
CTACTGTACAGCAGTTTAGACATCACATCACAGACCTCAGCTCTGACTTA
GGGCTGTCGGCTAAGCACGCAAGACAAGTGTTTCCAAGTACGCCAATGGG
TACATACTCGAGTATGTGTCTCATCACAACACATCACATCATGTCATTCC
GCTGATGTGCCTACTGTACAGCAGTTTAGACATCACATCACAGACCTCAG
CTCTGACTTAGGGCTGTCGGCTAAGCACGCAAGACAAGTGTTTCCAAGTA
CGCCAATGGGTACATACTCGAGTATGTGTCTCATCACAACACATCACATC
ATGTCATTCCGCTGATTGGCCAGGTGGCGGAGGCGCTCCAGCAGCAAGTA
GTGCAGTTTGACATCACATCTGATCACATCACATCACATCACACCACTAC
AATTTGATATGAATCACCACATCACATCACATCATATCATTCCACCGATT
GGCCAGGTGGTGGAGGTGTACCAGGAGTACATGTAGTGCATTTTGACAGC
ACATCTGATAACATCACATCATGTTATTCCACTCATTTCCCAGGTGTTGG
GGGTATACCAGGAGTAAGTAGTGCAGTTTGACATCACATCTGATCACATC
ACACCACATCACATCACATCATTCCGCTGATTGGCCAGGTGGCGGAGGTG
TACCAGGAGTACATGTAGTGCATTTTGACTTTGACATCACATCTGATCAC
ATCACATCATGTCATTCTGCTGATTGGCCAGGTGGTGGAGGTGTACCAGG
AGGGGCTGGGGCTCTTCCACGATGTCCGCATACTGCACGGCCTGGCCACT
GCCCTCCCAGAGGACAGCCCTGAGGTGGGTGGGTGGGTGCGTGCAACCTG
GGCGCTGCTTTTCGGAGACAGGCAGGCCCCCGCCGCTGATGAGTAGAGGG
AGTACAGTACAGTACAGCAGCAGTTTCGAAGGGTGTACTGCAACGGTCTC
ACCTGCCGCCGTGTCCGCAATCCGACCGCCCCGTCCACCCTCCCCCCGCC
CGCCATATATCATCACATAATATTCAACAATCCACCCCCCCGCCACATTT
CCCCCGGGGGGGCGTGCCTCCCCCCCCCCCGGCCACTCCGCACCGCCACC
AACCCCAACACCAATCCCACCATGCCCAACACCACTACCACCAACACCAC
CACCGCCACCTGGACCACAACAGGGCTGCCGGGCCCTCTCGACGGCCAAC
GCCATCCTCAACACGATAGACACCTCCAACCCTTCCTCCTGGCGACACGG
GCGCAACCTGGCCAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2322551..2324966-

>mRNA_S-ischiensis_contig8.19584.1 ID=mRNA_S-ischiensis_contig8.19584.1|Name=mRNA_S-ischiensis_contig8.19584.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig8:2322551..2324966- (Schizocladia ischiensis KU_0333)
ATGGCGGCCAATGGTATTTCGGGGAACGGCGAGGGCGGGATGGTGAAGCC
CCCGAGCCCGGACCTGACGTTCGAGCTCAGGAGGGCGGAGATGGCGGCCA
ATGGTATTTCGGGGAACGGCGAGGGCGGGATGGTGAAGCCCCCGAGCCCG
GACCTGACGTTCGAGCTCAGGAGGGCGGAGGTGGTGGAGGTGTACCAGGA
GGGGCTGGGGCTCTTCCACGATGTCCGCATACTGCACGGCCTGGCCACTG
CCCTCCCAGAGGACAGCCCTGAGGTGGTGGAGGTGTACCAGGAGGGGCTG
GGGCTCTTCCACGATGTCCGCATACTGCACGGCCTGGCCACTGCCCTCCC
AGAGGACAGCCCTGAGGGCTGCCGGGCCCTCTCGACGGCCAACGCCATCC
TCAACACGATAGACACCTCCAACCCTTCCTCCTGGCGACACGGGCGCAAC
CTGGCCAAGGGCTGCCGGGCCCTCTCGACGGCCAACGCCATCCTCAACAC
GATAGACACCTCCAACCCTTCCTCCTGGCGACACGGGCGCAACCTGGCCA
AG
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