mRNA_S-ischiensis_contig8.19568.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19568.1
Unique NamemRNA_S-ischiensis_contig8.19568.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19568.1 vs. uniprot
Match: A0A836C6L3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C6L3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 4.190e-5
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  116 LKAPLNCAAKAGEVGLVKALLESDADVNGCCSKKRGTALHVAAAEGHTAVLREVLGAGADVNAKNCKG 319
            L   L  AA+AG++  V+ALL + ADVN   +  + T LH AA+ GHTAV+RE+L AGA V A + +G
Sbjct:  400 LNQALFLAAEAGDIEQVRALLGAGADVNYVDNGTKQTPLHAAASRGHTAVVRELLAAGAHVEASSTRG 467
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C6L3_9CHLO4.190e-548.53Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2240665..2241990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1218
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19568.1prot_S-ischiensis_contig8.19568.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2241309..2241815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.5318182-UTR-S-ischiensis_contig8:2240664..22413081622817289.5318182-UTR-S-ischiensis_contig8:2240664..2241308Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2240665..2241308 -
1695740999.2248049-UTR-S-ischiensis_contig8:2240664..22413081695740999.2248049-UTR-S-ischiensis_contig8:2240664..2241308Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2240665..2241308 -
1622817289.5582438-UTR-S-ischiensis_contig8:2241815..22418541622817289.5582438-UTR-S-ischiensis_contig8:2241815..2241854Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2241816..2241854 -
1695740999.2472298-UTR-S-ischiensis_contig8:2241815..22418541695740999.2472298-UTR-S-ischiensis_contig8:2241815..2241854Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2241816..2241854 -
1622817289.5682936-UTR-S-ischiensis_contig8:2241962..22419901622817289.5682936-UTR-S-ischiensis_contig8:2241962..2241990Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2241963..2241990 -
1695740999.262594-UTR-S-ischiensis_contig8:2241962..22419901695740999.262594-UTR-S-ischiensis_contig8:2241962..2241990Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2241963..2241990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817289.5446515-CDS-S-ischiensis_contig8:2241308..22418151622817289.5446515-CDS-S-ischiensis_contig8:2241308..2241815Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2241309..2241815 -
1695740999.2368143-CDS-S-ischiensis_contig8:2241308..22418151695740999.2368143-CDS-S-ischiensis_contig8:2241308..2241815Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2241309..2241815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19568.1

>prot_S-ischiensis_contig8.19568.1 ID=prot_S-ischiensis_contig8.19568.1|Name=mRNA_S-ischiensis_contig8.19568.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MDLVWRDSTPAQWSWWLKAPLNCAAKAGEVGLVKALLESDADVNGCCSKK
RGTALHVAAAEGHTAVLREVLGAGADVNAKNCKGYTALHLAARNGHVLAA
DELLRAGAAVHETVANKREATALHLACLQGRFTVVRVLLRAGANARIKIT
GEGAHPSMWPRLRARRGW*
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mRNA from alignment at S-ischiensis_contig8:2240665..2241990-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19568.1 ID=mRNA_S-ischiensis_contig8.19568.1|Name=mRNA_S-ischiensis_contig8.19568.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1326bp|location=Sequence derived from alignment at S-ischiensis_contig8:2240665..2241990- (Schizocladia ischiensis KU_0333)
TTCTGGAGCTGCCCCCGCTACGGCCCAGGTGAGTCGGCATCGGAATGGAC
AGGCCCGTGGGGGTTGGACTGCGAGCACCGTGTATACATCCTGTCCTCTT
GCTGACGAGGCCCTGCCTCTCCTACCTGACGAGCAGGGCGCTGGAAATGC
TGCCATTGCTCGCGCCGCAGAGCTCATGGATCTGGTTTGGCGTGATTCGA
CCCCAGCGCAGTGGAGCTGGTGGCTCAAAGCCCCACTTAACTGCGCCGCC
AAGGCTGGGGAGGTGGGCCTGGTGAAAGCTCTGCTGGAGTCAGACGCGGA
CGTGAATGGATGTTGCTCCAAGAAGCGCGGAACCGCCCTCCATGTGGCAG
CTGCAGAGGGCCACACAGCAGTCCTGCGCGAAGTGCTTGGGGCTGGGGCG
GACGTCAATGCCAAGAACTGCAAGGGGTATACGGCTCTCCACCTGGCTGC
CCGTAACGGTCATGTGCTGGCGGCAGATGAGCTACTGAGGGCAGGGGCTG
CGGTTCACGAGACTGTGGCCAACAAGAGGGAGGCGACCGCGCTGCATCTG
GCTTGTCTCCAAGGCCGCTTCACGGTGGTGCGGGTGCTGCTCAGGGCTGG
CGCCAATGCTCGCATCAAGATCACGGGGGAGGGAGCCCACCCCTCCATGT
GGCCGCGTCTCAGGGCAAGACGGGGATGGTAAAGCACCTGCTGGATGCGG
GAGCCACGGTCGATGCCAGGGACAATACGTGAGGGCGTACAGCGCTCCAT
GAAGCCGCTGTGTGGGGCCACGCGGAGGTAGTGCAGCCGCTGGTGCGTGC
TGGTGCCCACGTGGAGGTGCTGGACAATACATCCCAGACACCCTTGCACA
GGGCCGCGGAGGAAGGCCACCAAGCGGCACTGACGTGTCTCCTGGGTGCG
GGGGCAGAGAAAGAGCCCCGAGACTCTGACGGGTCAACGCCTCTCCACCT
CGCCGCCGGCTCGGGTCGTCGGGATGCAGCCCAAGCTCTTCTTGAGGCAG
GTGCGGATCGAACAGCACGTGCAGCGGATGGGAAGCCCCGCCTTCACATG
GCTTGCACCTTGCTTGAGCAGGGGTGTGTCGAGGTGCTCCTCCGCTTCGG
GGCAGACGAGCTGGCCACAGACGAACAAGGCTGCACGCCCGCCCAGGTTG
TCGGGTGCAGGCGGACGATGCCGAGCGGGACCCAGCCGCAGAGGCACGCA
TAACCGACATGCTGCAGAAGGCACCCTTGGACCAGGTCTGGTATCGCAGG
GCGTGGCTGGTCATGGTGCGGGCCCGCCAGCGCTCATCTCACAACCCGCA
GGGTGCGCACAGCAACGCCAAGCGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2240665..2241990-

>mRNA_S-ischiensis_contig8.19568.1 ID=mRNA_S-ischiensis_contig8.19568.1|Name=mRNA_S-ischiensis_contig8.19568.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig8:2240665..2241990- (Schizocladia ischiensis KU_0333)
ATGGATCTGGTTTGGCGTGATTCGACCCCAGCGCAGTGGAGCTGGTGGCT
CAAAGCCCCACTTAACTGCGCCGCCAAGGCTGGGGAGGTGGGCCTGGTGA
AAGCTCTGCTGGAGTCAGACGCGGACGTGAATGGATGTTGCTCCAAGAAG
CGCGGAACCGCCCTCCATGTGGCAGCTGCAGAGGGCCACACAGCAGTCCT
GCGCGAAGTGCTTGGGGCTGGGGCGGACGTCAATGCCAAGAACTGCAAGG
GGTATACGGCTCTCCACCTGGCTGCCCGTAACGGTCATGTGCTGGCGGCA
GATGAGCTACTGAGGGCAGGGGCTGCGGTTCACGAGACTGTGGCCAACAA
GAGGGAGGCGACCGCGCTGCATCTGGCTTGTCTCCAAGGCCGCTTCACGG
TGGTGCGGGTGCTGCTCAGGGCTGGCGCCAATGCTCGCATCAAGATCACG
GGGGAGGGAGCCCACCCCTCCATGTGGCCGCGTCTCAGGGCAAGACGGGG
ATGGTAAATGGATCTGGTTTGGCGTGATTCGACCCCAGCGCAGTGGAGCT
GGTGGCTCAAAGCCCCACTTAACTGCGCCGCCAAGGCTGGGGAGGTGGGC
CTGGTGAAAGCTCTGCTGGAGTCAGACGCGGACGTGAATGGATGTTGCTC
CAAGAAGCGCGGAACCGCCCTCCATGTGGCAGCTGCAGAGGGCCACACAG
CAGTCCTGCGCGAAGTGCTTGGGGCTGGGGCGGACGTCAATGCCAAGAAC
TGCAAGGGGTATACGGCTCTCCACCTGGCTGCCCGTAACGGTCATGTGCT
GGCGGCAGATGAGCTACTGAGGGCAGGGGCTGCGGTTCACGAGACTGTGG
CCAACAAGAGGGAGGCGACCGCGCTGCATCTGGCTTGTCTCCAAGGCCGC
TTCACGGTGGTGCGGGTGCTGCTCAGGGCTGGCGCCAATGCTCGCATCAA
GATCACGGGGGAGGGAGCCCACCCCTCCATGTGGCCGCGTCTCAGGGCAA
GACGGGGATGGTAA
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