mRNA_S-ischiensis_contig8.19567.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19567.1
Unique NamemRNA_S-ischiensis_contig8.19567.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2237169..2239520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_002850.1
Exons4
Model size1021
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19567.1prot_S-ischiensis_contig8.19567.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2237231..2239173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.4147484-UTR-S-ischiensis_contig8:2237168..22372301622817260.4147484-UTR-S-ischiensis_contig8:2237168..2237230Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2237169..2237230 +
1695740977.0729268-UTR-S-ischiensis_contig8:2237168..22372301695740977.0729268-UTR-S-ischiensis_contig8:2237168..2237230Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2237169..2237230 +
1622817260.4755611-UTR-S-ischiensis_contig8:2239173..22395201622817260.4755611-UTR-S-ischiensis_contig8:2239173..2239520Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2239174..2239520 +
1695740977.1256673-UTR-S-ischiensis_contig8:2239173..22395201695740977.1256673-UTR-S-ischiensis_contig8:2239173..2239520Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2239174..2239520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.429105-CDS-S-ischiensis_contig8:2237230..22373061622817260.429105-CDS-S-ischiensis_contig8:2237230..2237306Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237231..2237306 +
1695740977.082907-CDS-S-ischiensis_contig8:2237230..22373061695740977.082907-CDS-S-ischiensis_contig8:2237230..2237306Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237231..2237306 +
1622817260.4412124-CDS-S-ischiensis_contig8:2237434..22374901622817260.4412124-CDS-S-ischiensis_contig8:2237434..2237490Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237435..2237490 +
1695740977.0950599-CDS-S-ischiensis_contig8:2237434..22374901695740977.0950599-CDS-S-ischiensis_contig8:2237434..2237490Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237435..2237490 +
1622817260.451705-CDS-S-ischiensis_contig8:2237761..22380431622817260.451705-CDS-S-ischiensis_contig8:2237761..2238043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237762..2238043 +
1695740977.1050413-CDS-S-ischiensis_contig8:2237761..22380431695740977.1050413-CDS-S-ischiensis_contig8:2237761..2238043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2237762..2238043 +
1622817260.4643784-CDS-S-ischiensis_contig8:2238975..22391731622817260.4643784-CDS-S-ischiensis_contig8:2238975..2239173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2238976..2239173 +
1695740977.114073-CDS-S-ischiensis_contig8:2238975..22391731695740977.114073-CDS-S-ischiensis_contig8:2238975..2239173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2238976..2239173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19567.1

>prot_S-ischiensis_contig8.19567.1 ID=prot_S-ischiensis_contig8.19567.1|Name=mRNA_S-ischiensis_contig8.19567.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
MYPHIGPEGAEGTLLRLKAQLFGHIAASSSLHKRHGARSRLGDKGRDHPG
AAAAFDRETREATEAALGMLSLGEKDYVILQMQREMVELRARAQEVVDFS
EATLAELASAQERAAQEQTETEERLQSELDRWRHHHPKVEELLGDVHKLR
QEEDRNRRQLLALARKLARSRARERELEEEVRARSSHRRAGPRHVPTRFG
TPV*
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mRNA from alignment at S-ischiensis_contig8:2237169..2239520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19567.1 ID=mRNA_S-ischiensis_contig8.19567.1|Name=mRNA_S-ischiensis_contig8.19567.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2352bp|location=Sequence derived from alignment at S-ischiensis_contig8:2237169..2239520+ (Schizocladia ischiensis KU_0333)
GTTGGGCTTGTGGTCTTTGCGCAGCACTCCAAGGCAAAGGCCGGATTGAC
TACACGAGTGAGATGTACCCGCATATTGGCCCGGAGGGTGCGGAGGGGAC
CCTTCTTCGCCTGAAGGCGCAGCTATTTGGTCACATAGGTGAGCGTCCCA
ATTTTATGAACAACCGATTTCAGTGTCGGGATCCGGATCGCTGGCCATGC
TACAAGTACTACTAGTAGTACCCTCTCATCACTGGGTCACCCTGTCGCTT
TTCCACGCTGCTACAGCTGCGTCGTCAAGTCTACACAAGCGGCATGGTGC
ACGGTCACGTCTTGGCGACAAAGTGAGTACTTGCGTGTACTCCTCAAGCC
TGTGGTTTGCCTGGATGTCGGCGCCAGCAAGAGGGTACAAAATCAGTAGA
GGCATACTGGCTGGTTCGCTGTGATGGATGGGCAAAGGCGCTGGGCCTTG
TGCACTTCAATGTTTCACGACTCGGAGCCGGAGATGCCTGGGGTATCTTG
TTGCTTCACAGTGCAATACAATAGTACGACTTTGCCTACGGGCCGCCGCA
ATCCCTCTGTGCTGTCCGCCACTGGGACACTGACCTGGCACAGGGCCGGG
ATCATCCCGGGGCGGCGGCTGCATTCGACCGCGAGACGCGGGAGGCCACA
GAGGCGGCACTGGGGATGCTGTCCCTCGGGGAGAAAGATTATGTCATCCT
GCAGATGCAGCGCGAGATGGTGGAACTGAGGGCACGAGCGCAAGAGGTGG
TTGACTTCTCCGAGGCCACCCTGGCGGAGCTTGCGAGTGCGCAGGAGCGA
GCAGCCCAGGAGCAGACTGAGACGGAGGAACGCCTGCAGTCCGAGCTGGA
CAGATGGAGGCACCACCACCCAAAAGTGGGTGATAGTATGTACGAAGTAT
CTAATGGCCATTTGCTGCCGCTTGCCACATACTTCCGGAAGTCTCTTACT
TGCGAGAGCGTCCTCTCTAGCAGATGGTACATAGCATGGTTACTTTTGGA
ATGCATGCCTAGAGGTTGAGTTGTCTGGAGCTTGTGTCAGTGAAAGAACC
TTGCTGGGGAGGGTCTCTCTATTGTCATGTACTTCTACTTCAAGTACTCG
TATGTACTTGTACGTATGAATGGGTTGCCACCGCAGTTGCAATGCACAGG
CCTGCTGTAGACCATGTCCCCATACATGCCGTGTCTCGACACTCTCCCGG
GCATGCAGCTGTTGATACGAGTCCCTCTGCTCTCGATCGTGACTGAATGG
GGCGGAAATGTCTTGGCTGTCCAAAAAGTTGGCTTGAAGTTTGCGGGAAC
CTCCTTGGCATTGCACCAGGTGCCCACAGCTGGTGCTGGTGCTCGGGGAC
TGGTGGGGCCAAATGGGGAGGAGGTTAGGACACAACGAGGGTCGATCCCT
CGTGTGGCAGACCGGCGCCGGGACCGAGCCTGTCGTCAACAACCCCAGGG
AAACACAGGACATTTCCGTGTCCCGTGTTGCAACTGTTTTGTTCGCCACG
AGGAACGACCCGCGTTCAGGACATTCAAGTGTACTCACTGCAGTACCAGA
GGGCAGCGCTCATCCACTGGGGAGGGCTTGAACTGAAACCAAGCAGGCAT
GCGTCTCACAAAGGCAGGCTGCTGCGGGCACGACGTCCGACTCACTCGAC
CCCGGCGCAGCCATACCCTCCCCGCGCCCCCGCCCCAGGAGGCTTTACCC
TCCTCGCTTACCAGGAGGATGCAGATGCTCGCTGACCCCCAGGAACGCTC
ATCCGGCCTCTGCTGCCCCCCCGATGCCTGACCCGTGGGCGGGTGAAACT
CAAGCAGGTGGAAGAGCTGCTAGGGGACGTGCACAAGCTGAGGCAGGAGG
AGGATCGCAACCGCCGCCAGCTGCTGGCGCTGGCGCGGAAGCTGGCCCGA
AGCCGGGCCAGGGAGCGAGAGCTTGAGGAGGAGGTTCGTGCAAGAAGCTC
TCACCGCCGAGCCGGGCCCCGGCACGTGCCGACGCGTTTCGGTACGCCTG
TCTGACTGAGATGCTCAGGGGCACACCATAGCTTGGTAACTTTGTAGAGC
TCGAGGTACTGTTAATATGATCAAGCGATAACCACGCATGGAAGCGCTCT
CGCTTTTTTGGAAGTAGTACTTCGAAGTACGAAGTACCCTCCTCCTTGAA
TGACCTATCGTACTTCAACGAAATACAGTGCGACAACTTCAGTAGACGAG
TGCACTTCGAAGTACTTTTAATTTTGAGTGAACATATTGATTGGGGCATC
CTTGAATGACCTATCGTACTTCAACGAAGTACAGTGCGACAACTTCAGTA
GACGAGTGTACTTCGAAGTACTTTTAATTTTGAATGAACATATTGATTGG
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2237169..2239520+

>mRNA_S-ischiensis_contig8.19567.1 ID=mRNA_S-ischiensis_contig8.19567.1|Name=mRNA_S-ischiensis_contig8.19567.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig8:2237169..2239520+ (Schizocladia ischiensis KU_0333)
ATGTACCCGCATATTGGCCCGGAGGGTGCGGAGGGGACCCTTCTTCGCCT
GAAGGCGCAGCTATTTGGTCACATAGATGTACCCGCATATTGGCCCGGAG
GGTGCGGAGGGGACCCTTCTTCGCCTGAAGGCGCAGCTATTTGGTCACAT
AGCTGCGTCGTCAAGTCTACACAAGCGGCATGGTGCACGGTCACGTCTTG
GCGACAAACTGCGTCGTCAAGTCTACACAAGCGGCATGGTGCACGGTCAC
GTCTTGGCGACAAAGGCCGGGATCATCCCGGGGCGGCGGCTGCATTCGAC
CGCGAGACGCGGGAGGCCACAGAGGCGGCACTGGGGATGCTGTCCCTCGG
GGAGAAAGATTATGTCATCCTGCAGATGCAGCGCGAGATGGTGGAACTGA
GGGCACGAGCGCAAGAGGTGGTTGACTTCTCCGAGGCCACCCTGGCGGAG
CTTGCGAGTGCGCAGGAGCGAGCAGCCCAGGAGCAGACTGAGACGGAGGA
ACGCCTGCAGTCCGAGCTGGACAGATGGAGGCACCACCACCCAAAAGGCC
GGGATCATCCCGGGGCGGCGGCTGCATTCGACCGCGAGACGCGGGAGGCC
ACAGAGGCGGCACTGGGGATGCTGTCCCTCGGGGAGAAAGATTATGTCAT
CCTGCAGATGCAGCGCGAGATGGTGGAACTGAGGGCACGAGCGCAAGAGG
TGGTTGACTTCTCCGAGGCCACCCTGGCGGAGCTTGCGAGTGCGCAGGAG
CGAGCAGCCCAGGAGCAGACTGAGACGGAGGAACGCCTGCAGTCCGAGCT
GGACAGATGGAGGCACCACCACCCAAAAGTGGAAGAGCTGCTAGGGGACG
TGCACAAGCTGAGGCAGGAGGAGGATCGCAACCGCCGCCAGCTGCTGGCG
CTGGCGCGGAAGCTGGCCCGAAGCCGGGCCAGGGAGCGAGAGCTTGAGGA
GGAGGTTCGTGCAAGAAGCTCTCACCGCCGAGCCGGGCCCCGGCACGTGC
CGACGCGTTTCGGTACGCCTGTCTGAGTGGAAGAGCTGCTAGGGGACGTG
CACAAGCTGAGGCAGGAGGAGGATCGCAACCGCCGCCAGCTGCTGGCGCT
GGCGCGGAAGCTGGCCCGAAGCCGGGCCAGGGAGCGAGAGCTTGAGGAGG
AGGTTCGTGCAAGAAGCTCTCACCGCCGAGCCGGGCCCCGGCACGTGCCG
ACGCGTTTCGGTACGCCTGTCTGA
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