mRNA_S-ischiensis_contig8.19559.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19559.1
Unique NamemRNA_S-ischiensis_contig8.19559.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A6H5KSV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV9_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 8.590e-57
Identity = 103/138 (74.64%), Postives = 118/138 (85.51%), Query Frame = 1
Query:   10 EAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            E E ++ALL++LAEGDF ADQNIVEVWVVGAE+EPGVLSAG+SSF VVDF+DFESQA+PLL G+ P FDFATTFKVTVDD FL++LGTE L LELNQ RAADFELVGR  V LS LLSS  +PR++LQ E L+S RDG
Sbjct:  139 EQEQESALLSELAEGDFSADQNIVEVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKVTVDDFFLRFLGTEGLVLELNQARAADFELVGRRQVALSGLLSS--KPRIILQREPLISTRDG 274          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: D8LSF7_ECTSI (C2-C2_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.270e-56
Identity = 103/138 (74.64%), Postives = 118/138 (85.51%), Query Frame = 1
Query:   10 EAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            E E ++ALL++LAEGDF ADQNIVEVWVVGAE+EPGVLSAG+SSF VVDF+DFESQA+PLL G+ P FDFATTFKVTVDD FL++LGTE L LELNQ RAADFELVGR  V LS LLSS  +PR++LQ E L+S RDG
Sbjct:  588 EQEQESALLSELAEGDFSADQNIVEVWVVGAELEPGVLSAGSSSFIVVDFFDFESQATPLLPGVSPAFDFATTFKVTVDDFFLRFLGTEGLVLELNQARAADFELVGRRQVALSGLLSS--KPRIILQREPLISTRDG 723          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A836CCF4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCF4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.330e-44
Identity = 92/164 (56.10%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    1 DEEEAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFL--------------------------KYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSV 414
            D  +A A+  LL +LA+GDFG DQN+VEVWVVGA+++ GV++A ASSF V+DF+D+ESQA+PLL G EP+FDFATT+KVTVDDLFL                          +YL TE LTLELNQTRAADF+LV R  + LS LLS+  +PRLVL  E L+SV
Sbjct:  688 DGSDAAAEETLLAELADGDFGPDQNVVEVWVVGAQLKEGVIAANASSFAVLDFFDYESQATPLLAGREPRFDFATTYKVTVDDLFLSIEWHDGYSCXXXXXXXXXXXXXXXXRYLATEGLTLELNQTRAADFDLVARCKIALSSLLST--KPRLVLNGEPLVSV 849          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A7S1TSY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSY9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.670e-36
Identity = 76/142 (53.52%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 DEEEAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQT-RAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            DE E+ A+ A   DLA  D G D+NIVEVW+   E++ G L  G+++F +VDFYDFES A+P++ GL P FDFATT+KV++DD FL+YL TE+L +ELN T R ADF+++ RA + L  +L +  RP LVL HE L SVR G
Sbjct:  369 DEAESVAETAYAADLA-ADIGPDENIVEVWIRKVELKDGALEEGSNTFCIVDFYDFESVATPIMAGLTPGFDFATTYKVSLDDFFLRYLATENLAVELNLTKRGADFDILARAQIPLGSMLEA-YRPVLVLTHEPLYSVRSG 508          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A7S3ZSY2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.140e-34
Identity = 70/139 (50.36%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    7 EEAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            E  E+   LL +L +GD   D+N+VEVWVV A ++ GV+S  AS+F VVDF  +ESQA+  L G +P+FDFAT++KV+VDDLFL+YL TESL+LE+ + + AD+EL+ +A + L+PLL S  +P L+L  + L++ R G
Sbjct:  543 ETTESTNLLLAELQDGDLQPDENLVEVWVVSASLDEGVVSPNASTFAVVDFLTYESQATQWLPGSKPEFDFATSYKVSVDDLFLRYLATESLSLEICEAQQADYELLAKASIPLAPLLDS--KPTLILDKQPLIAARTG 679          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A7S3ZSY1_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSY1_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.140e-34
Identity = 70/139 (50.36%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    7 EEAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            E  E+   LL +L +GD   D+N+VEVWVV A ++ GV+S  AS+F VVDF  +ESQA+  L G +P+FDFAT++KV+VDDLFL+YL TESL+LE+ + + AD+EL+ +A + L+PLL S  +P L+L  + L++ R G
Sbjct:  543 ETTESTNLLLAELQDGDLQPDENLVEVWVVSASLDEGVVSPNASTFAVVDFLTYESQATQWLPGSKPEFDFATSYKVSVDDLFLRYLATESLSLEICEAQQADYELLAKASIPLAPLLDS--KPTLILDKQPLIAARTG 679          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A7S3XN98_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN98_HETAK)

HSP 1 Score: 120 bits (300), Expect = 4.920e-31
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  100 AEIEPGVLSAGAS----SFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            AE++ G L   A     +F +VDF+D+ESQA+PLL G  PKFDFATT+KV VDD FL++L  E LTLELN+ + ADFEL+ R  V L  LLSS  RPRLVL+ E L SVRDG
Sbjct:    1 AELKAGALGGAADDDACTFVLVDFFDYESQATPLLRGARPKFDFATTYKVHVDDFFLRFLALEPLTLELNRNKGADFELLARCSVPLGGLLSS--RPRLVLEREPLYSVRDG 110          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A7S2S466_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S466_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.080e-29
Identity = 55/123 (44.72%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   55 DFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            DFG  +N++E+WV+GA +    +  G ++F ++DFYD+E+Q SPLL GL PK++FA T+++ VD  FL+YL +E+LTLELN+T+ AD+EL+G+  + +  LL SS + +       ++S RDG
Sbjct:  363 DFGPGENLIEIWVMGASLNENKVEPGVTTFVMLDFYDYETQTSPLLSGLHPKYNFAATYRIKVDHFFLRYLASETLTLELNRTKHADYELLGQCTLSMRSLLESSGKFKC--DEAEIISSRDG 483          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A2R5G9Z1_9STRA (Protein fantom n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9Z1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.250e-28
Identity = 54/123 (43.90%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   55 DFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG 423
            DFG  +N++E+W+  A+++   L   A++F ++DFYD+E+Q SPL+ GL P F+FA T++V VD   L+Y+ +++LTLELN+TR  DFEL+G+  + L PLL  S + ++     +++SVRDG
Sbjct:  582 DFGPGENLIEIWIKDAKLDETKLEQAATTFVMLDFYDYETQTSPLVSGLTPNFNFAATYRVAVDHFLLRYMASDTLTLELNRTRHGDFELLGQTALSLRPLLHGSGKWQV--DDAQIISVRDG 702          
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Match: A0A1V9YGY3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGY3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.790e-25
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 1
Query:   13 AEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFVVDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQTRAADFELVGRAVVRLSPLLSS 366
            A+A+ ALL      D    +N++EVWVV A  EP  +   + +F + DF+DFESQ + LL G +P ++FAT++K+T D  FL+YL +E LTLE++Q     F +VG+AVVRLSPLL+S
Sbjct:  607 ADAEPALL--AGAEDLEPGENLLEVWVVSAHFEPKYVHGSSCTFVLCDFFDFESQTTALLPGGDPVYNFATSYKITADAFFLRYLASEQLTLEVHQALKGAFHVVGKAVVRLSPLLAS 722          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSV9_9PHAE8.590e-5774.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSF7_ECTSI1.270e-5674.64C2-C2_1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CCF4_9STRA2.330e-4456.10EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1TSY9_9STRA2.670e-3653.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3ZSY2_9STRA2.140e-3450.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZSY1_9STRA2.140e-3450.36Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
A0A7S3XN98_HETAK4.920e-3158.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2S466_9STRA2.080e-2944.72Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A2R5G9Z1_9STRA6.250e-2843.90Protein fantom n=1 Tax=Hondaea fermentalgiana TaxI... [more]
A0A1V9YGY3_9STRA7.790e-2547.46Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2198071..2199410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.7e-49
Seed eggNOG ortholog2880.D8LSF7
Preferred nameRPGRIP1L
KEGG koko:K16512,ko:K16550
GOsGO:0001654,GO:0001655,GO:0001664,GO:0001701,GO:0001736,GO:0001738,GO:0001754,GO:0001822,GO:0001889,GO:0002009,GO:0003002,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005886,GO:0005911,GO:0005929,GO:0005930,GO:0006935,GO:0006996,GO:0007163,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008277,GO:0008283,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0021532,GO:0021537,GO:0021549,GO:0021591,GO:0021670,GO:0021772,GO:0021915,GO:0021988,GO:0022008,GO:0022037,GO:0022038,GO:0022406,GO:0022607,GO:0022615,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030054,GO:0030154,GO:0030182,GO:0030326,GO:0030900,GO:0030902,GO:0031862,GO:0031870,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035116,GO:0035136,GO:0035137,GO:0035253,GO:0035295,GO:0035869,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043583,GO:0043584,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045744,GO:0046530,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051640,GO:0051641,GO:0060039,GO:0060041,GO:0060173,GO:0060271,GO:0060322,GO:0060429,GO:0060541,GO:0061008,GO:0061351,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072657,GO:0090102,GO:0090596,GO:0097014,GO:0097458,GO:0097499,GO:0097500,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1903441,GO:1904491,GO:1905515,GO:1990778
EggNOG free text desc.thromboxane A2 receptor binding
EggNOG OGs2CMYB@1,2QSQG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-21_003510.1
Exons3
Model size424
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19559.1prot_S-ischiensis_contig8.19559.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2198071..2199410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817288.9678214-CDS-S-ischiensis_contig8:2198070..21981541622817288.9678214-CDS-S-ischiensis_contig8:2198070..2198154Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2198071..2198154 +
1695740998.7768161-CDS-S-ischiensis_contig8:2198070..21981541695740998.7768161-CDS-S-ischiensis_contig8:2198070..2198154Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2198071..2198154 +
1622817288.9802945-CDS-S-ischiensis_contig8:2198594..21987441622817288.9802945-CDS-S-ischiensis_contig8:2198594..2198744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2198595..2198744 +
1695740998.788861-CDS-S-ischiensis_contig8:2198594..21987441695740998.788861-CDS-S-ischiensis_contig8:2198594..2198744Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2198595..2198744 +
1622817288.9926052-CDS-S-ischiensis_contig8:2199221..21994101622817288.9926052-CDS-S-ischiensis_contig8:2199221..2199410Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2199222..2199410 +
1695740998.8004227-CDS-S-ischiensis_contig8:2199221..21994101695740998.8004227-CDS-S-ischiensis_contig8:2199221..2199410Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2199222..2199410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19559.1

>prot_S-ischiensis_contig8.19559.1 ID=prot_S-ischiensis_contig8.19559.1|Name=mRNA_S-ischiensis_contig8.19559.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
DEEEAEADAALLNDLAEGDFGADQNIVEVWVVGAEIEPGVLSAGASSFFV
VDFYDFESQASPLLGGLEPKFDFATTFKVTVDDLFLKYLGTESLTLELNQ
TRAADFELVGRAVVRLSPLLSSSQRPRLVLQHERLLSVRDG
back to top

mRNA from alignment at S-ischiensis_contig8:2198071..2199410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19559.1 ID=mRNA_S-ischiensis_contig8.19559.1|Name=mRNA_S-ischiensis_contig8.19559.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1340bp|location=Sequence derived from alignment at S-ischiensis_contig8:2198071..2199410+ (Schizocladia ischiensis KU_0333)
GACGAGGAGGAGGCGGAGGCTGACGCAGCCCTGCTCAACGACCTTGCCGA GGGCGACTTCGGTGCCGACCAGAACATTGTGGAGGTGCGCGTCGTGCGTG CGTGTGCGCGTGTGCGTGGTTTTTCGCGCGCACGTGTGTGTGTGTGTGTG TGTGTGTGTCACTGCGCGTGCGTTTGTGCATGCGTGCGTGTGCACGTGTG TGTGTGTGTGTGTTCATGGCTGCCCGTCCCTGCGCAGGGACACAGAGAGG GAGAATACAGGTGATGATGTAATGCGGCCGCTCCCCCCCCCCCCGCCACG CCCCTCTCTCCTTGGCCTGCCGCCCCCCTCTGCCCCTCCCATCGCAACTA CCACCACCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCGCCACC ACCAACGACACCATTGCCACCGCCACCAACCACCACCACCCCCACCAACA CCACCTTACCACTCCACCGCCCCCCCCACACACACACACCACCACCACCA CCACCACCACCACCCCCAAAACAGGTCTGGGTCGTCGGGGCGGAAATCGA GCCCGGGGTCCTGTCCGCCGGCGCGTCTAGCTTCTTTGTGGTGGACTTCT ATGACTTTGAGAGCCAGGCCTCGCCCCTGCTGGGTGGCCTGGAGCCTAAG TTTGACTTTGCCACCACATTCAAGGTTTGTACTTGTACATGTGTCCATAG GGAGGGCTCGCTCGCCTCGTGCGGTCAAGTGCGAGTAGGTGCCATTTGCT GCCGCCGGCGGCGGCGCTGCGGCCGCTGCCGCCTCCACCGCTGGCGGCGG CGTCGCCTCCCCCCTGCCTGTACAGTACAGAACCCGTCAACACAACACGC GATTGCATGCCGCACACATGCACGCACGCGCGACGACACGTCCCTCTACA CAGCAGGTTGTTGTTCGTCCCCCGCACACCCCGGAAAAAGGCAGCGGCGG CGGTGGCGGTGGACCATTTTCCTTCTTTTCTTGAAGCGAGTGAGCACCTC ACACCAAGCACACGTGTGCATACCGACACACATGGACACACACACACACA CGCACGCACACACACACACACACAacACACACACACGCACGCGCGCGCGC ACACACACACACACACACGCACGCACACACACACATGCACGCCTCCCTCA GGTGACGGTGGACGACCTCTTCCTCAAGTACCTCGGCACGGAGTCCCTCA CCTTGGAGCTCAACCAGACGCGGGCCGCGGACTTTGAGCTGGTGGGGAGG GCCGTCGTGCGGCTGTCCCCGCTCCTCTCCTCCTCCCAGCGCCCGCGGCT GGTGCTGCAGCACGAGCGCCTGCTCTCCGTCCGCGACGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2198071..2199410+

>mRNA_S-ischiensis_contig8.19559.1 ID=mRNA_S-ischiensis_contig8.19559.1|Name=mRNA_S-ischiensis_contig8.19559.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig8:2198071..2199410+ (Schizocladia ischiensis KU_0333)
GACGAGGAGGAGGCGGAGGCTGACGCAGCCCTGCTCAACGACCTTGCCGA
GGGCGACTTCGGTGCCGACCAGAACATTGTGGAGGACGAGGAGGAGGCGG
AGGCTGACGCAGCCCTGCTCAACGACCTTGCCGAGGGCGACTTCGGTGCC
GACCAGAACATTGTGGAGGTCTGGGTCGTCGGGGCGGAAATCGAGCCCGG
GGTCCTGTCCGCCGGCGCGTCTAGCTTCTTTGTGGTGGACTTCTATGACT
TTGAGAGCCAGGCCTCGCCCCTGCTGGGTGGCCTGGAGCCTAAGTTTGAC
TTTGCCACCACATTCAAGGTCTGGGTCGTCGGGGCGGAAATCGAGCCCGG
GGTCCTGTCCGCCGGCGCGTCTAGCTTCTTTGTGGTGGACTTCTATGACT
TTGAGAGCCAGGCCTCGCCCCTGCTGGGTGGCCTGGAGCCTAAGTTTGAC
TTTGCCACCACATTCAAGGTGACGGTGGACGACCTCTTCCTCAAGTACCT
CGGCACGGAGTCCCTCACCTTGGAGCTCAACCAGACGCGGGCCGCGGACT
TTGAGCTGGTGGGGAGGGCCGTCGTGCGGCTGTCCCCGCTCCTCTCCTCC
TCCCAGCGCCCGCGGCTGGTGCTGCAGCACGAGCGCCTGCTCTCCGTCCG
CGACGGCGTGACGGTGGACGACCTCTTCCTCAAGTACCTCGGCACGGAGT
CCCTCACCTTGGAGCTCAACCAGACGCGGGCCGCGGACTTTGAGCTGGTG
GGGAGGGCCGTCGTGCGGCTGTCCCCGCTCCTCTCCTCCTCCCAGCGCCC
GCGGCTGGTGCTGCAGCACGAGCGCCTGCTCTCCGTCCGCGACGGC
back to top