mRNA_S-ischiensis_contig8.19551.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19551.1 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.440e-21 Identity = 60/142 (42.25%), Postives = 88/142 (61.97%), Query Frame = 3
Query: 6 VWAAASAGDLAAVKAYLESGEDPNRRDPATLWGPLHLACFAGQDKVVAELVSRGADVAKEVEGNYNPLLLCCNCGAEG-MPCPP--PTRGNSGGNGPQGGQCGHVRAVHSLMEAGASIDVKSDQQFTPLHMAAYYGRLHLAR 422
+W A+AG A++K +L +G + R+ T+W LH AC AGQ++VV LVS GA + EVEG YNPLLLCC+CG M CP + +CGH++A L++AGA+++ +DQ FTPL +A + G+L L++
Sbjct: 31 LWPDAAAGKSASIKKFLRNGGHVDARNKDTMWTLLHTACHAGQNRVVEVLVSAGAKLESEVEGQYNPLLLCCSCGCHNNMVCPVLRSVPNEHVEDLEHFEECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSK 172 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19551.1 >prot_S-ischiensis_contig8.19551.1 ID=prot_S-ischiensis_contig8.19551.1|Name=mRNA_S-ischiensis_contig8.19551.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=749bp MPCPPPTRGNSGGNGPQGGQCGHVRAVHSLMEAGASIDVKSDQQFTPLHMback to top mRNA from alignment at S-ischiensis_contig8:2110921..2124959+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19551.1 ID=mRNA_S-ischiensis_contig8.19551.1|Name=mRNA_S-ischiensis_contig8.19551.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=14039bp|location=Sequence derived from alignment at S-ischiensis_contig8:2110921..2124959+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:2110921..2124959+ >mRNA_S-ischiensis_contig8.19551.1 ID=mRNA_S-ischiensis_contig8.19551.1|Name=mRNA_S-ischiensis_contig8.19551.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=4494bp|location=Sequence derived from alignment at S-ischiensis_contig8:2110921..2124959+ (Schizocladia ischiensis KU_0333)back to top |