mRNA_S-ischiensis_contig8.19550.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19550.1
Unique NamemRNA_S-ischiensis_contig8.19550.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19550.1 vs. uniprot
Match: A0A6H5KPW0_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.460e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3 
Query: 1563 AVVCSWPACGRRQQAPASGGPGGGFQRCGLCGVASYCSKECQVAHWKMAHKQLCK 1727
            AV+CS   CGRRQ     G    GF+RCG C    YCSK+CQVAHWK  HK  CK
Sbjct:  385 AVLCSRETCGRRQ-----GDVKEGFKRCGRCRTTVYCSKDCQVAHWKEKHKMECK 434
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BLAST of mRNA_S-ischiensis_contig8.19550.1 vs. uniprot
Match: A0A444DXC6_ENSVE (MYND-type domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DXC6_ENSVE)

HSP 1 Score: 59.3 bits (142), Expect = 2.750e-6
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 3 
Query: 1560 GAVVCSWPACGRRQQAPASGGPGGGFQRCGLCGVASYCSKECQVAHWKMAHKQLC 1724
            G  +CS+  CGR +           F+RC  CGVASYCS+ CQV HWK+AHK  C
Sbjct:  131 GLSLCSYGGCGRPETRRLE------FRRCSACGVASYCSRACQVLHWKLAHKAEC 179
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BLAST of mRNA_S-ischiensis_contig8.19550.1 vs. uniprot
Match: A0A196SGB7_BLAHN (MYND-type zinc finger protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGB7_BLAHN)

HSP 1 Score: 54.7 bits (130), Expect = 6.830e-5
Identity = 24/52 (46.15%), Postives = 29/52 (55.77%), Query Frame = 3 
Query: 1569 VCSWPACGRRQQAPASGGPGGGFQRCGLCGVASYCSKECQVAHWKMAHKQLC 1724
             CS P CG  +  P      G F++C  C  A YCSKECQ+ HWK  HK+ C
Sbjct:    6 TCSNPNCGNTESKP------GEFKKCSRCKTACYCSKECQLEHWKNGHKKEC 51
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BLAST of mRNA_S-ischiensis_contig8.19550.1 vs. uniprot
Match: A0A836BNU9_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNU9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 7.650e-5
Identity = 32/65 (49.23%), Postives = 36/65 (55.38%), Query Frame = 3 
Query: 1569 VCSWPACGRRQQAPASGGPGGGF--QRCGLCGVASYCSKECQVAHWKMAHKQLCKHSSCQGRGAG 1757
             CS PAC     A  +G    G   QRCG CG ASYC ++CQ AHWK  HK+ C  SS  G  AG
Sbjct:  823 ACSNPAC-----ANLAGDSEAGLRLQRCGRCGQASYCCRDCQTAHWKAGHKEACGGSSGGGSKAG 882
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KPW0_9PHAE7.460e-756.36MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A444DXC6_ENSVE2.750e-649.09MYND-type domain-containing protein n=2 Tax=Ensete... [more]
A0A196SGB7_BLAHN6.830e-546.15MYND-type zinc finger protein n=1 Tax=Blastocystis... [more]
A0A836BNU9_9CHLO7.650e-549.23MYND-type domain-containing protein n=1 Tax=Edapho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2105786..2110173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue4e-07
Seed eggNOG ortholog4641.GSMUA_Achr3P19540_001
GOsGO:0001932,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0008150,GO:0009505,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0030312,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0043549,GO:0044464,GO:0045859,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098772
EggNOG free text desc.SNF1-related protein kinase regulatory subunit
EggNOG OGs37K5F@33090,3GF16@35493,3KVNI@4447,COG0517@1,KOG1764@2759
COG Functional cat.C
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006550.1
Exons3
Model size2181
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19550.1prot_S-ischiensis_contig8.19550.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2106036..2106542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817288.0535338-UTR-S-ischiensis_contig8:2105785..21060351622817288.0535338-UTR-S-ischiensis_contig8:2105785..2106035Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2105786..2106035 -
1695740998.056638-UTR-S-ischiensis_contig8:2105785..21060351695740998.056638-UTR-S-ischiensis_contig8:2105785..2106035Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2105786..2106035 -
1622817288.0788279-UTR-S-ischiensis_contig8:2106542..21068661622817288.0788279-UTR-S-ischiensis_contig8:2106542..2106866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2106543..2106866 -
1695740998.0801306-UTR-S-ischiensis_contig8:2106542..21068661695740998.0801306-UTR-S-ischiensis_contig8:2106542..2106866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2106543..2106866 -
1622817288.090212-UTR-S-ischiensis_contig8:2107693..21084471622817288.090212-UTR-S-ischiensis_contig8:2107693..2108447Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2107694..2108447 -
1695740998.0906582-UTR-S-ischiensis_contig8:2107693..21084471695740998.0906582-UTR-S-ischiensis_contig8:2107693..2108447Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2107694..2108447 -
1622817288.1013572-UTR-S-ischiensis_contig8:2109827..21101731622817288.1013572-UTR-S-ischiensis_contig8:2109827..2110173Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2109828..2110173 -
1695740998.1036425-UTR-S-ischiensis_contig8:2109827..21101731695740998.1036425-UTR-S-ischiensis_contig8:2109827..2110173Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2109828..2110173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817288.0665228-CDS-S-ischiensis_contig8:2106035..21065421622817288.0665228-CDS-S-ischiensis_contig8:2106035..2106542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2106036..2106542 -
1695740998.0697713-CDS-S-ischiensis_contig8:2106035..21065421695740998.0697713-CDS-S-ischiensis_contig8:2106035..2106542Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2106036..2106542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19550.1

>prot_S-ischiensis_contig8.19550.1 ID=prot_S-ischiensis_contig8.19550.1|Name=mRNA_S-ischiensis_contig8.19550.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MLAPEAVRLGLGIDGDWGWANLRGAAVTLMLCAAECFRGQSARVRGAVVC
SWPACGRRQQAPASGGPGGGFQRCGLCGVASYCSKECQVAHWKMAHKQLC
KHSSCQGRGAGNWGGRERQTCLAGLEGLRVGHGLGFGPGCYDTVPFCSEV
VHIVQYVRVLLSACTATP*
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mRNA from alignment at S-ischiensis_contig8:2105786..2110173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19550.1 ID=mRNA_S-ischiensis_contig8.19550.1|Name=mRNA_S-ischiensis_contig8.19550.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4388bp|location=Sequence derived from alignment at S-ischiensis_contig8:2105786..2110173- (Schizocladia ischiensis KU_0333)
CCTGAGTTCTTCGTTTAGAGCTCTAGAGCTACAGAGCTCTATCAAGGCTT
AGCGCGGGAACAGCGAGCTTGCCCCACACAGCCTCTGGCACTCTGTACCC
CGAACACGGAGCTTGTCATTGCTGTCACCTCAAACAAGAGCAAGCTGGTG
GCTTGGTCCAGCACCAGCCAGTCCACGGAGGGCTGGTCGTGCCTCGCGTT
TCGAGGCAGGAGACAACGCGCTGCCGTGTTGGCAGCACCTGTGCTTGGTT
TGGGCAAGCATGCAGCGGGTGGTTGATGCCAGCGACCCTGAGTGGGGAGA
GTTCGATTCCTTGCATGAGGATACGACCTTCCGACATGGTTGCGTGGTGA
GATGTCAAATGTAGACGACGAGAATCGGAACGACCGCGCGCACCCACGCC
ATATGCGTACGTAGATGGCGTGTATTTAGGGAGGGAAACCTCTCTACCGC
AGTAGGCTGCAAGCCAGTACCGGCTATACCGCCGTGGGTGCTCACGGTCT
TCGTGCCATTATCTGGAGGCGAATTACAGTAGGACTTTGCGAACGGGATA
GCTACGCAAACTTCCCCTGGCGAGCTAGGGAAGGGCCACTGTTGAGGTCT
TTGGTGACGTGGCCTGCACCTCGCCCTGGGTTGTTCCTGTTAATACTTGC
TAGTAAATCATGCCACAGAGCACGTCCGAGGATAGTAAGTAGAACTTGGG
AAAGGAGCCTCTGGCTGTTAGCTATCGATTGCCGGTAGCTGAGCCAAAAT
GTGTTCAACATAGCGCGAGAATTCGAGCGACTGTGCAGAAAGTGTGACCA
CACACGAACACACGTTTTGACGAGATTGCCCCCCCCGGGCCAATACACAT
GCCTGCACAGGTGACCCTCTAAGAAAGGAGTTCCACTCCGCCTATCCGGC
GTCCTTCCCCTCCCCTATTTCTCGTAGTTGATTAATTAGACCTTGCTTGG
CCTACCACCCGGAGGACTACTTTCAATACGGACACTTTGAGAGTGGTGGG
TCATAAAAATGGCACACACCAGCCTGGCGACCTTGCCGCCGGTGGGCCCA
CATCCTCTACAAAAGAGCAACAGAGTGTTTACAGTACATAGTACTGTTGT
CACCAAGGGCGAACGCCCCGAGGGTGACCGGCCATTCTTAGCTTGAATTA
GACAACACGCTGTGAAGGCAAGCGAGGTTGACTTGATACGAGGTACTTGT
ACGAAGGGAGATAGTACCACCAAGTACATGCTTCTAAGTAGTACAGTACT
GTGGTACTTCGAAGTACTTCAAAGTATTGTACTGTAATCGTGCTCGAATA
CCTGCCAGCAGCTGAGCTCTAAATGTATAGACTGCTGCACTTGTGGACTA
CTGGCTGAAGCAGGCGGTGCCGTGAATGGTGATCCGACGACGACTCAGGC
CCGGGCCGCCCCGGTGCGTGCCCATCCGAGTTTCCGCGGGAACCGCAACA
GCGGTCCCGGCCCGGGCTGACTGACCAATCGACCAACGCATAGGCAGACA
ACAGGCAGAATGACAGACAGACGGGGAGCCAGACACAATGGACAGAAAGA
CGGACAGACGGGCAGGCAGACAGACAGGCACAGATTTCATACGAGTACAC
AAGAACAAGACAGGCAATTGGGCAGACTGACAGATAGTCAGGCACTGTGA
GGCAGACGAGAAGACAGGCCGGCCGAGGCGACCAACCGACCAAAGCATTT
TGTCGCCTCACCGCCCGCACTGGCAGGTCAAACACCTGAACGATGTACTG
GCGGCGGCCCCCGGGGAGGCCATGAACCCGGAGTTGTGGGCCGCAGGGGT
CTGGAGAAATGTCTCTGCGCTTGAGGGGCATGAAAAGAAGGACTGGGACA
TGCCCTCTACCAACGTCAGCTCGCTCGTGTTTGACGCGATTGGTATGAAC
ACGTTCATGCCCAGCACGGAGTTCCTGGCCCCGCGGTACCCCTATCTGGT
GAAGGTGACGTGCGCACAAAGTACTTTGAAGCACTTGTTGTTGTAATGTT
CTGTCGTAGGACTCCCGATCACAGCGCATGCGCTACGGTTTTGCCTTCCG
ACCCTTTCAGGACGACGGACGGTGCTGTGCACTCGTTTCACACTACCTGC
TGTACTCGAGCACTGTACTTACTGCAGGTACATACTGTAAATGCCTTAGG
TATGCTTCCAAGCACACAAGCTACCTATGTACTTTGAAGTGTTAGTAGTT
GAGTGTACTGTTGTCCCCAGAGCACTACTGTACCTACTTCAAAGTACTTC
CTGAGCTCAGCGACGTTCAGTTGCCGTGCAGTACGACCGCTGCCTGCCCG
TGGTTGCCGCACACCTGCCCGCGCCTGCCTGGCAAGCTGGTCGAGGGCAC
CCGCCTCACCCGCGCCTTGCAGCTGGTGGGGATGGGCCACGTGGTCCCCA
GGCACCGGAGGATGGACGTATCGGCGGCCTGCCTCGGCATCCTGTCCGCC
ACTGTGTGGATCCGCCACGTGCACCAGAAGGTGAGGGCAGTGATGGAATA
TCTATGCAAATCAACCTATTTATCGACAGTACTGATCTATGTCTATCGAT
ATTCGATATTCGATAGTTGGACCCACACTAGTTTTTCCCCCCACTGCCCT
CGTCCCCTTTCCTTTTTGTTCTTTTGGTTTCTCCCCACTTCCCCATTCCC
CTTTCCCCTTGGTTCCTTTTTAACTTATTTGCCCTGCGAGTGAAGGCGGG
GGAACTGCTGGCTTCCGTGTTGGGGCCCGGAACTCGCGAAAGTAGGATCA
CCTCTATTTTCCACTCGCTTCCTTCTTCATACACATAAATCCAAGAACTT
CGTAGTTGCTAGTAACACCACCCGCAGAATCAGTCGAGCCGGATAACTAT
CCGCTGATCGATATTCCATCACTGCCTGGAGGTGATGGCCTGCGCGCCAT
TCCAGCAACTGTGGGCCCTCATCGGCCGCTCCGCCGGGCAGCCCCTCCCC
ACACTCCCCACCAGCGACGACGAGGGCGGGCGGCAGTGGGCCGGGCACAC
GATGGGCCAGGAGGTGATCACCCTGCTCGACCGCCTCGTGCACTTCCCCG
GCCACATGACCGCGGCCGACGCCGCCGCGCTGGCCGCCGGCGCCCTCCCC
CCCCTCACCGGGTTCCTGCGGCGCCACCAGCACGGCTTCTCAATGCCGCC
GAACCCTCACGAGGACCCGCGGTTTGACGTCGGGCCCGCGGGTCTGACCG
CTGCGGTGCTCCGCAACACCGTGTTCGCCTGCAGCTCCATCTGCCTCCTT
ATGCAGTTCTACGGCACACGACTCGCTGTGCCTCCGCCGCCGCCCGCTTC
CCGGCAGTGGCGGCGGCCCACCAGCGGCGCGGCGGCGGCGGCGGTTGCGG
TGGTGGATTTCCCGGAGGAGGCGGGGCTTCTGCTTGCGGAGGCGTTGCTC
GGGGTGATTGTGGACACGCCCTGAGCACCGGGGGAGCTCCCTGCGGGCGT
GTGCCCTGACGCGGATGCCAACACCTTTGAGACGGCCGTGTACAGCGTGT
GGGAGGCGGCCAACATCTTGTGCAACTTGTGGCCTACCCGCGCCATCCTG
GCACGGGTCCCGGGGGAGCGGAGGCGGCGGGCCGCCGCCCGCCTGTCCCG
CCTCTCCCGGGCCGGGCCCGGGGGGGGCAATATGCTCGCCCCCGAGGCCG
TGAGGCTTGGCCTCGGCATTGATGGGGACTGGGGCTGGGCGAACTTGCGA
GGGGCTGCGGTGACGTTGATGTTGTGCGCCGCGGAGTGTTTTCGGGGCCA
GAGCGCCCGGGTGCGCGGCGCGGTGGTTTGTTCCTGGCCCGCCTGTGGCC
GGCGGCAGCAGGCCCCGGCCAGCGGTGGCCCCGGTGGCGGCTTTCAGCGC
TGCGGGCTGTGCGGAGTGGCGAGCTATTGCTCCAAGGAGTGCCAGGTGGC
GCACTGGAAAATGGCCCACAAACAGCTGTGCAAACACAGCAGTTGCCAAG
GACGGGGAGCTGGGAACTGGGGTGGCCGTGAGCGGCAAACTTGCCTGGCC
GGCTTGGAAGGCCTGAGAGTCGGGCACGGGCTGGGGTTCGGGCCCGGTTG
TTACGACACCGTGCCGTTCTGCAGTGAAGTCGTACATATTGTACAGTATG
TGCGTGTCCTTTTAAGCGCCTGCACTGCCACGCCGTGATTTGTTGTTTCT
TCACCACCTGTCATCTTTCTATCTCTGATGCTCCGTGGTGCATGCAATCC
CAGCTACAGTACTTCGAAGTACTTACTTCGAAGTGCGTTGTACCTCGTGC
CAGTGCCCTTGATACTTGATGCAGGGCAAGTTACGTACTTCGCAGTGTTC
ACAGGATGATATCACAGAGGCGAGGTTTCGGGCCACGTCACTGGCGACCT
CAACAGTGGCCACACCGTGTCTCGCCGAGGAACGAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2105786..2110173-

>mRNA_S-ischiensis_contig8.19550.1 ID=mRNA_S-ischiensis_contig8.19550.1|Name=mRNA_S-ischiensis_contig8.19550.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig8:2105786..2110173- (Schizocladia ischiensis KU_0333)
ATGCTCGCCCCCGAGGCCGTGAGGCTTGGCCTCGGCATTGATGGGGACTG
GGGCTGGGCGAACTTGCGAGGGGCTGCGGTGACGTTGATGTTGTGCGCCG
CGGAGTGTTTTCGGGGCCAGAGCGCCCGGGTGCGCGGCGCGGTGGTTTGT
TCCTGGCCCGCCTGTGGCCGGCGGCAGCAGGCCCCGGCCAGCGGTGGCCC
CGGTGGCGGCTTTCAGCGCTGCGGGCTGTGCGGAGTGGCGAGCTATTGCT
CCAAGGAGTGCCAGGTGGCGCACTGGAAAATGGCCCACAAACAGCTGTGC
AAACACAGCAGTTGCCAAGGACGGGGAGCTGGGAACTGGGGTGGCCGTGA
GCGGCAAACTTGCCTGGCCGGCTTGGAAGGCCTGAGAGTCGGGCACGGGC
TGGGGTTCGGGCCCGGTTGTTACGACACCGTGCCGTTCTGCAGTGAAGTC
GTACATATTGTACAGTATGTGCGTGTCCTTTTAAGCGCCTGCACTGCCAC
GCCGTGAATGCTCGCCCCCGAGGCCGTGAGGCTTGGCCTCGGCATTGATG
GGGACTGGGGCTGGGCGAACTTGCGAGGGGCTGCGGTGACGTTGATGTTG
TGCGCCGCGGAGTGTTTTCGGGGCCAGAGCGCCCGGGTGCGCGGCGCGGT
GGTTTGTTCCTGGCCCGCCTGTGGCCGGCGGCAGCAGGCCCCGGCCAGCG
GTGGCCCCGGTGGCGGCTTTCAGCGCTGCGGGCTGTGCGGAGTGGCGAGC
TATTGCTCCAAGGAGTGCCAGGTGGCGCACTGGAAAATGGCCCACAAACA
GCTGTGCAAACACAGCAGTTGCCAAGGACGGGGAGCTGGGAACTGGGGTG
GCCGTGAGCGGCAAACTTGCCTGGCCGGCTTGGAAGGCCTGAGAGTCGGG
CACGGGCTGGGGTTCGGGCCCGGTTGTTACGACACCGTGCCGTTCTGCAG
TGAAGTCGTACATATTGTACAGTATGTGCGTGTCCTTTTAAGCGCCTGCA
CTGCCACGCCGTGA
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