mRNA_S-ischiensis_contig8.19548.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19548.1
Unique NamemRNA_S-ischiensis_contig8.19548.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: D7G756_ECTSI (Propionyl-CoA carboxylase, alpha subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G756_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 6.470e-108
Identity = 162/213 (76.06%), Postives = 184/213 (86.38%), Query Frame = 1 
Query:    1 PFEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            PF+KILIANRGEIACRVM TARRMGVRTVAV+SD DDQ+PHVRMA E VCIGP +AL+SYL  DK+LDA   TGAQA+HPGYGFLSEN +FA+ACE+  + F+GPPS AIESMGDKI SK+IA EAGV TIPGFKG+I+S +EAV+IA++IGYPVM+KASAGGGGKGMRIAYD +  R GF RS  EA SSFGD RML+EKYIEDGHHIEIQ 
Sbjct:   53 PFDKILIANRGEIACRVMATARRMGVRTVAVFSDADDQAPHVRMAGEAVCIGPPEALKSYLDADKILDAALRTGAQAIHPGYGFLSENASFAEACEQAGIAFVGPPSGAIESMGDKIESKKIAAEAGVHTIPGFKGIIESGDEAVRIAEEIGYPVMIKASAGGGGKGMRIAYDAEDARSGFERSTAEAISSFGDGRMLVEKYIEDGHHIEIQV 265
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A835ZB92_9STRA (Propionyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB92_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.050e-101
Identity = 156/213 (73.24%), Postives = 186/213 (87.32%), Query Frame = 1 
Query:    1 PFEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            PF+KILIANRGEIACRV+RTAR+MGV+TVAVYSD+DD + HVRMADE VCIGP QAL+SYL VDKV+ A+K TGAQAVHPGYGFLSENM FA  CE+  + FIGPPSSAI++MGDK+ SK+IA +A V+TIPG+KGVI+ T+ A+KIA++IGYPVMMKASAGGGGKGMRIA +D  V  GF+ SKQEA ++F DDRML+EKYI++GHHIEIQ 
Sbjct:   37 PFDKILIANRGEIACRVIRTARKMGVKTVAVYSDIDDGALHVRMADEAVCIGPNQALKSYLNVDKVMGAIKQTGAQAVHPGYGFLSENMVFAGKCEEAGVAFIGPPSSAIQAMGDKLMSKKIASDAKVNTIPGYKGVIEDTDHAIKIAREIGYPVMMKASAGGGGKGMRIARNDADVSSGFMLSKQEAMNAFNDDRMLVEKYIDNGHHIEIQV 249
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A2D5BGW1_9RHOB (Acetyl/propionyl-CoA carboxylase subunit alpha (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2D5BGW1_9RHOB)

HSP 1 Score: 296 bits (759), Expect = 5.080e-98
Identity = 143/212 (67.45%), Postives = 180/212 (84.91%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F+KILIANRGEIACRV++TA+ MG++TVA+YSD D Q+ HV+MA+E V IGP+ A QSY+V++KV+DA++ TGAQAVHPGYGFLSEN  FA+A E E + FIGPP+SAIESMGDKI SK++A+EAGVST+PG+ GVI   +EAVKIAQ++GYPVM+KASAGGGGKGMRIA+++   R+GF  SK EAASSFGDDR+ +EK++    HIEIQ 
Sbjct:    2 FDKILIANRGEIACRVIKTAKAMGIKTVAIYSDADAQALHVKMANEAVHIGPSPANQSYIVIEKVMDAIRQTGAQAVHPGYGFLSENRLFAEALEAEGVAFIGPPASAIESMGDKITSKKLAKEAGVSTVPGYMGVIADADEAVKIAQEVGYPVMLKASAGGGGKGMRIAWNNAEAREGFQSSKNEAASSFGDDRIFIEKFVTQPRHIEIQV 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A0T7H655_NEOGA (Propionyl-CoA carboxylase, alpha subunit (Fragment) n=2 Tax=Neorhizobium galegae bv. officinalis TaxID=323656 RepID=A0A0T7H655_NEOGA)

HSP 1 Score: 292 bits (747), Expect = 1.440e-97
Identity = 142/212 (66.98%), Postives = 175/212 (82.55%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
             +KIL+ANRGEIACRV+RTAR+MG++TVAVYSD D ++ HVRMADE V IGPA + QSY+V+DK+LDA++ TGA AVHPGYGFLSEN AFA A EK  +VFIGPP  AI++MGDKI SK+IA EAGVST+PG  G+I+  EEAVKI+  IGYPVM+KASAGGGGKGMRIA++D   R+GF  S+ EA +SFGDDR+ +EK+++   HIEIQ 
Sbjct:    4 LKKILVANRGEIACRVIRTARKMGIKTVAVYSDADAEALHVRMADEAVHIGPAPSSQSYIVIDKILDAIRTTGADAVHPGYGFLSENAAFAQALEKAGVVFIGPPVKAIQAMGDKITSKKIAAEAGVSTVPGHMGLIEDAEEAVKISASIGYPVMIKASAGGGGKGMRIAWNDAEAREGFQSSRNEAKNSFGDDRIFIEKFVDQPRHIEIQV 215
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A2W5AI96_9SPHN (Acetyl/propionyl-CoA carboxylase subunit alpha (Fragment) n=1 Tax=Sphingomonas taxi TaxID=1549858 RepID=A0A2W5AI96_9SPHN)

HSP 1 Score: 298 bits (764), Expect = 2.610e-97
Identity = 144/212 (67.92%), Postives = 180/212 (84.91%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F+KILIANRGEIACRV++TAR+MG+ TVAVYSD D  + HVRMADE V IGP+ A QSY+V+DK++DA++ TGA+AVHPGYGFLSENM FA+A EKE +VFIGPPS AIE+MGDKI SK+IA+EAGVST+PG+ G+I   +EAV+I+ +IGYPVM+KASAGGGGKGMRIA++D   R+GF  S+ EAA+SFGDDR+ +EK++    HIEIQ 
Sbjct:    2 FKKILIANRGEIACRVIKTARKMGIATVAVYSDADRNALHVRMADEAVHIGPSPANQSYIVIDKIMDAIRQTGAEAVHPGYGFLSENMKFAEALEKEGVVFIGPPSGAIEAMGDKITSKKIAQEAGVSTVPGYMGLIADADEAVRISTEIGYPVMIKASAGGGGKGMRIAWNDQEAREGFESSRNEAANSFGDDRIFIEKFVTQPRHIEIQV 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A3XF80_9RHOB (Propionyl-CoA carboxylase, alpha subunit n=1 Tax=Roseobacter sp. MED193 TaxID=314262 RepID=A3XF80_9RHOB)

HSP 1 Score: 292 bits (748), Expect = 2.920e-97
Identity = 140/212 (66.04%), Postives = 176/212 (83.02%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            FEKILIANRGEIACRV+++AR+MG++TVA+YSD D Q+ HV+MADE V IGP  A QSY+V+DKV++A++ TGAQAVHPGYGFLSEN  FA+A   E + F+GPP  AIE MGDKI SK+IA+EAGVST+PG  G+I+  +EAVKI+Q+IGYPVM+KASAGGGGKGMRIA++D+  R+GF  SK EAA+SFGDDR+ +EK++    HIEI  
Sbjct:    2 FEKILIANRGEIACRVIKSARKMGIKTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMEAIRATGAQAVHPGYGFLSENSKFAEALATEGVAFVGPPVGAIEKMGDKITSKKIAKEAGVSTVPGHMGLIEDADEAVKISQEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIHC 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A7Y2U0Y6_9RHOB (Acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha (Fragment) n=1 Tax=Boseongicola sp. TaxID=1886600 RepID=A0A7Y2U0Y6_9RHOB)

HSP 1 Score: 298 bits (764), Expect = 5.060e-97
Identity = 143/212 (67.45%), Postives = 178/212 (83.96%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F+KILIANRGEIACRV++TAR+MG++TVAVYSD D  + HV+MADE V IGP QA QSY+V+DK++DA++ TGA+AVHPGYGFLSEN  FA+A E E + FIGPP  AIE+MGDKI SK+IA+EAGVST+PG+ G+I+  E+AVKI+  +GYPVM+KASAGGGGKGMRIA++DD  R+GF  SK EAASSFGDDR+ +EK++    HIEIQ 
Sbjct:    2 FKKILIANRGEIACRVIKTARKMGIKTVAVYSDADQSALHVKMADEAVHIGPPQANQSYIVIDKIMDAIRQTGAEAVHPGYGFLSENPKFAEALEAEGVAFIGPPVKAIEAMGDKITSKKIAQEAGVSTVPGYMGLIEDAEDAVKISNQVGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAASSFGDDRIFIEKFVTQPRHIEIQV 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A074JH07_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Thalassospira permensis NBRC 106175 TaxID=1353532 RepID=A0A074JH07_9PROT)

HSP 1 Score: 292 bits (748), Expect = 1.230e-96
Identity = 143/212 (67.45%), Postives = 174/212 (82.08%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F+KILIANRGEIACRV+++AR+MG+ TVAVYSD D  + HV+MADE V IGPA + QSYLV+DK++DA K TGA+AVHPGYGFLSEN AFA A +   + FIGPP  AI +MGDKI SK+IA EAGVST+PG+ GVI  T+EA+KIA D+GYPVM+KASAGGGGKGMRIA +D   R+GF R+  EAASSFGDDR+ +EK++E+  HIEIQ 
Sbjct:    2 FKKILIANRGEIACRVIKSARKMGIATVAVYSDADKNALHVQMADEAVHIGPAPSNQSYLVIDKIIDACKSTGAEAVHPGYGFLSENQAFAKALDAAKIAFIGPPVDAIAAMGDKITSKKIAAEAGVSTVPGYMGVIKDTDEAIKIANDVGYPVMLKASAGGGGKGMRIARNDAECREGFERATSEAASSFGDDRVFIEKFVEEPRHIEIQV 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A0L1JMA9_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Pseudaestuariivita atlantica TaxID=1317121 RepID=A0A0L1JMA9_9RHOB)

HSP 1 Score: 303 bits (777), Expect = 2.360e-96
Identity = 147/212 (69.34%), Postives = 180/212 (84.91%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F+KILIANRGEIACRV++TAR+MG+ TVAVYSD D Q+ HV+MADE V IGPA A QSY+V+D ++DA++ TGA+AVHPGYGFLSEN  FA+A EKE + FIGPP+ AIESMGDKI SK+IA+EAGVST+PG+ G+I+  EEAVKI+ DIGYPVM+KASAGGGGKGMRIA++DD  R+GF  SK EAA+SFGDDR+ +EK++    HIEIQ 
Sbjct:    2 FKKILIANRGEIACRVIKTARKMGIATVAVYSDADAQALHVQMADEAVHIGPAPANQSYIVIDNIMDAIRQTGAEAVHPGYGFLSENKLFAEALEKEGVAFIGPPAGAIESMGDKITSKKIAQEAGVSTVPGYMGLIEDAEEAVKISNDIGYPVMIKASAGGGGKGMRIAWNDDETREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQV 213
[Close]
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Match: A0A832N4B1_9RHOB (ATP-grasp domain-containing protein (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832N4B1_9RHOB)

HSP 1 Score: 292 bits (748), Expect = 3.510e-96
Identity = 142/212 (66.98%), Postives = 175/212 (82.55%), Query Frame = 1 
Query:    4 FEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVCIGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDLVFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQDIGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLEKYIEDGHHIEIQA 639
            F KILIANRGEIACRV+RTA++MG+RTVA+YS+ D  + HV MADE V IGP  A +SY+V+DKV+DA++ TGA+AVHPGYGFLSEN  FA+A  +E + FIGPP  AIESMGDKI SK++A+EAGVST+PG+ G+I   EEAVKI++ IGYPVM+KASAGGGGKGMRIA++D+  R+GF  SK EAASSFGDDR+ +EK+I    HIEIQ 
Sbjct:    2 FNKILIANRGEIACRVIRTAKKMGIRTVAIYSEADRHALHVAMADEAVLIGPPPANESYIVIDKVMDAIRQTGAEAVHPGYGFLSENKLFAEALAREGVAFIGPPVGAIESMGDKITSKKLAQEAGVSTVPGYMGLIKDAEEAVKISRKIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAASSFGDDRIFIEKFITQPRHIEIQV 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G756_ECTSI6.470e-10876.06Propionyl-CoA carboxylase, alpha subunit n=2 Tax=E... [more]
A0A835ZB92_9STRA1.050e-10173.24Propionyl-CoA carboxylase n=1 Tax=Tribonema minus ... [more]
A0A2D5BGW1_9RHOB5.080e-9867.45Acetyl/propionyl-CoA carboxylase subunit alpha (Fr... [more]
A0A0T7H655_NEOGA1.440e-9766.98Propionyl-CoA carboxylase, alpha subunit (Fragment... [more]
A0A2W5AI96_9SPHN2.610e-9767.92Acetyl/propionyl-CoA carboxylase subunit alpha (Fr... [more]
A3XF80_9RHOB2.920e-9766.04Propionyl-CoA carboxylase, alpha subunit n=1 Tax=R... [more]
A0A7Y2U0Y6_9RHOB5.060e-9767.45Acetyl/propionyl/methylcrotonyl-CoA carboxylase su... [more]
A0A074JH07_9PROT1.230e-9667.45Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A0L1JMA9_9RHOB2.360e-9669.34Propionyl-CoA carboxylase n=1 Tax=Pseudaestuariivi... [more]
A0A832N4B1_9RHOB3.510e-9666.98ATP-grasp domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2088667..2093165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue9.5e-89
Seed eggNOG ortholog2880.D7G756
KEGG rclassRC00064,RC00090,RC00097,RC00367,RC00609,RC00942
KEGG koko:K01965,ko:K01968,ko:K14755
KEGG ReactionR00910,R00912,R01164,R01859,R01991,R03286,R04138
KEGG Pathwayko00280,ko00330,ko00340,ko00410,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00330,map00340,map00410,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4770@1,KOG0238@2759
EC6.3.2.11,6.4.1.3,6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpropionyl-CoA carboxylase, alpha subunit
Ec32 orthologEc-01_010970.3
Exons4
Model size675
Cds size675
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19548.1prot_S-ischiensis_contig8.19548.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2088667..2093165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817287.8153253-CDS-S-ischiensis_contig8:2088666..20888781622817287.8153253-CDS-S-ischiensis_contig8:2088666..2088878Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2088667..2088878 +
1695740997.8859248-CDS-S-ischiensis_contig8:2088666..20888781695740997.8859248-CDS-S-ischiensis_contig8:2088666..2088878Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2088667..2088878 +
1622817287.830477-CDS-S-ischiensis_contig8:2089292..20894851622817287.830477-CDS-S-ischiensis_contig8:2089292..2089485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2089293..2089485 +
1695740997.9009173-CDS-S-ischiensis_contig8:2089292..20894851695740997.9009173-CDS-S-ischiensis_contig8:2089292..2089485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2089293..2089485 +
1622817287.846187-CDS-S-ischiensis_contig8:2091696..20918081622817287.846187-CDS-S-ischiensis_contig8:2091696..2091808Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2091697..2091808 +
1695740997.9117677-CDS-S-ischiensis_contig8:2091696..20918081695740997.9117677-CDS-S-ischiensis_contig8:2091696..2091808Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2091697..2091808 +
1622817287.8613477-CDS-S-ischiensis_contig8:2093007..20931651622817287.8613477-CDS-S-ischiensis_contig8:2093007..2093165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2093008..2093165 +
1695740997.9302824-CDS-S-ischiensis_contig8:2093007..20931651695740997.9302824-CDS-S-ischiensis_contig8:2093007..2093165Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2093008..2093165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19548.1

>prot_S-ischiensis_contig8.19548.1 ID=prot_S-ischiensis_contig8.19548.1|Name=mRNA_S-ischiensis_contig8.19548.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
PFEKILIANRGEIACRVMRTARRMGVRTVAVYSDVDDQSPHVRMADEGVC
IGPAQALQSYLVVDKVLDAMKLTGAQAVHPGYGFLSENMAFADACEKEDL
VFIGPPSSAIESMGDKIRSKEIAREAGVSTIPGFKGVIDSTEEAVKIAQD
IGYPVMMKASAGGGGKGMRIAYDDDSVRDGFVRSKQEAASSFGDDRMLLE
KYIEDGHHIEIQASEAWQRDERGT*
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mRNA from alignment at S-ischiensis_contig8:2088667..2093165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19548.1 ID=mRNA_S-ischiensis_contig8.19548.1|Name=mRNA_S-ischiensis_contig8.19548.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4499bp|location=Sequence derived from alignment at S-ischiensis_contig8:2088667..2093165+ (Schizocladia ischiensis KU_0333)
CCTTTCGAGAAGATCCTCATCGCAAACCGCGGAGAGATTGCATGCCGGGT
CATGCGAACGGCGCGGCGCATGGGCGTGCGCACAGTGGCCGTCTACAGCG
ATGTGGACGACCAGTCCCCCCACGTGCGCATGGCGGATGAAGGTGTCTGC
ATTGGCCCGGCCCAGGCTCTGCAGAGCTACTTGGTCGTGGACAAGGTCTT
GGACGCCATGAAGTGAGCTGCTGGGGACCGACTTGCCCCCCCCCCTGGCG
GCCTGCCCGGTGTTCCCCTACGCTTGCCTGGTCCAGGACCAATCACTGTT
CTGTGTGGTCCCATGGGCGGCTGCTCTGATTTCCATCCCTCGATAGCCCG
TGGCTGCAGTGCACGTCACCTGCTGCGAGCCAGGCAGCTGCAACGCAGGC
ATTGCTAAGACCATGACCACAACAAATGAGTCGCCGCCGCCGCCGCCGCG
AGACCTCCGCGGGCCCAGCTGTTTTTTTCTCTCGACAGGCCCGATCGCCT
GGATGATCGATTTTCATTTAAATCCAAGAGTTCTAACCGGTGAGAGAGAG
CCGCTACTTGCCGGCAAGGGTTTATTTTTTGTAACGTGTGCGTGACGCAC
GCGCCCGCCCCCCCCCTTGCCTGCAGATTGACGGGCGCACAGGCGGTGCA
CCCGGGCTACGGCTTCCTGAGCGAGAACATGGCCTTCGCGGATGCCTGCG
AGAAGGAGGACTTGGTGTTCATCGGGCCCCCATCTTCCGCAATCGAGAGC
ATGGGCGACAAGATCCGCTCAAAGGAGATTGCCCGCGAGGCCGGCGTCAG
CACCATCCCGGGCTTCAAGGTAAGATGGGGTGGGTGGGGGCTGGGTTGGG
TTGGCACTTAGAGGTTTATTAGGGCCTAATTATTGTAGCGTTCATTTTAG
GTCTAATTTCCCCTAATTACCTCTAATTATGGGCTTGTCAGCACCTTCCC
GGGCTTCAAGGTGGGGTAGGTGGGGGCTGGGTTGGCACTTCGAGGTTTAT
TAGGGCCTTGCAATTAGCCTTCATTAGGGCCTTGTAATTGGCCTTCATTT
TAGGTCTAATTATCTTGGATCCCCCCCCGCCGTGTCCCGGCACGGTGAGG
GAACCGCCTCCCCCGCTAGGTCTCGGTCTAGCAGAGGAGGGGGGGGGCCC
ACCCGACTCTCACGAGTCGGGTATGGACTTGGCCACCCTCCCGCCTCTGG
CGGGGGGCGGGGGGGTGGCCACCCCCTCCCACCCTGGCTCTGCCAGGGGA
GGGAGGGGTCCTGCTCCGTCTCGAACGAAGCGCGTGGTCAATGCTCTCGG
GACTACGGCAAGCACCACGTGAGTGCATATACATATATTACCTCTAATTA
CCTCTAGTTATGGGCTTGTCAGACCATCCCGGGCTTCAAGGTGGGGTGGG
TGGGGGCTGGGTTGGCACTTCGAGGTTTATTCGGGCCTTGTATTTAGCCT
TCATTTGAGGTCTAGTTGCCCCTGCTTACCTCTAATTAAGGGCCTAAAAG
GGCAACACTTAGGGGTTAAGTGCCAACCCTGGGTCGGGGCGCATTGTCAT
GCACACGCCTCCCTTCGCCCGAAACGTCCACTGCAGAGTCTTAAGACGGT
TGTGCGGGGGCAGGGAGGCCCGTGCAGTGATATGATAAAGCGTGCATCTT
TGGCCGGTCAGGGGGGGCGGGGGGCGGGGGAACTGGACTGGGGACCGTTC
CGAGACCGATCAAACTGTGTGGCGATTTATTGTACAGGCGCAAACGTCTC
GGCCACGTGCTACAATTTTGTGCTCGCGTGTTCTTGCGGTGCTTTTGCAC
CTGCTCCACGGTTGCAGTAGTGATGGTCGGTGTGGGAGGTGGTTCGATTG
TGCGAGGGGGGGTCTAAGAAGCTGAAAAGGAGTGGGTATTGGATCTGCTG
CGACCCCCGAATCGATATGGTGTGGTCGATTCAGGGGGGGTGCTGTAGAG
CTCTACAAGTGTATTGCTATGGTTTTGTGGCCGTCCACACTGTTGGGTGT
ATGAGAGTTGTGTTCGGAGTTTCCCTTCCTAACTTTTACTACAAGCAAGC
AGATGTACCAAATGAACGGGCCGTGCTTTGAATATATACTGCGTAGCAGT
ACATATATGCTTATATGGGAAGCGTTGTTCTGGGGCCGGTACAGTAGTTG
CTCTACCGGCTAGAGCTGTGAACCAATAACTTCGGTCAAATCAATGTTTT
TCGGCCACGACCTGGCGACCGATTCGTTTTTCGGTGTTTCTTTAGTATTC
TTGCGGATGGCCGATTTGTTTTTGTTTACCGGGTTTTCTTTGGGTTGTTG
CCGGCAACGGCTACCGCGGGTGGGTGTCGAGCGATAGTACCGGTAGTGAG
GGATGTACCGGTACCCTCGAGGTGAAAATGTGCACGATTTTGAATGAGCG
CACAAAGTGAAAAACAGGACGCTCGGCCGATGACTATCGCTTTATCGGGG
CAAACCGGACCACCACAAAAAACGACTGAGCAAAGTAGGGACACCTCTTC
TTCCCACTCGCTTATTTGTCTTCTTGCAAAAAAGCGGCCCGATTCAAAGC
TCTACTGATCGCGGTTGAAAAAATCTGAATCGCTCCGAGTGCACAGCACA
GTATAAAGTATTTTGCTTCTTGCTTTGGGGACCCGGCCGGCACCACGCTT
GATTCGAGGTTGCAGTACTTTCTTGACTGCTGTATGTACCTACTCGTACA
GTTCTTGTAGTAGTACTGCAGACCTCGCCTCGTATGGGTGACTTAAAACA
GGGTGGCATGACTGTCACTAGAAAACTGTCATGTGATGTGATGTGATGTC
AAGCTAGAGAACGCACGTTAGAGAACTTCACCCTTTTGCGTCACATCACA
TAACTTCACGTCACACCATATTATTTGCTAAACGTCACTTGGTGTACTTG
TACCCTAACGGGCGCAGACGTGGCTTGGCCCGCAGCACCACAGTTGGCAA
CAGCGGGAGGGACAACTTGTACGATGACCCACCCCCGTTCCGGACAAAAC
ACAAACGTTCGCCTTTTTTGCCGCTCCCAGGGCGTGATCGACTCCACTGA
GGAAGCGGTGAAGATAGCTCAGGACATTGGCTACCCCGTCATGATGAAGG
CCAGCGCTGGCGGCGGTGGCAAGGGCATGAGGATTGCCTACGGTGAGCGC
GTGTCCCCCCCCCCCCCCCCCACCCCCTCTGAGGCTGCGGCAGACCTCTG
CCCTCCTACCTGTATCCATGTACTCGTACAGTGCTGCTACTGTAGAGCTC
AGCTGTACAGCACTGTACTGTATGGCGAGTGGGGCCTCGTTAGAACAGTA
CTCTATACAGTGCTCGAGTAGTTTTTTAGGGACCCTTGTTTGTACACTAC
TGCTGCGTCTCGGTCGAGTGAGGCGCTGTTGCGGTCAATGGTCTCGGGAC
TACTGCGGCGAGCACAGCGTGAGTACATCTAGACTCTCTCTATATAAATA
TACTGAAGACTGATTTTAGGGAGGGGAATCGCGGTGGTTTTAATCTCTAA
TTTGACCCGTAGGATTTTGGATAACGCATCGGATTGGGCCTGCTCACAAG
TATAGCTACTGCGCTTCGTAGCATGATTTTGTAAAAAAACTCTGGGGGGG
GGGGAAATCGAAGCTGAAAGTTGGCCTACCCAAGTCGCCGATTTTTGTCG
CCCATGCAGAGCACGACCAAGGAATCGCGAGTAGAATTTGAGACCGTTTT
TGAGCTCCTCTCATCGAGATGAGTCTCACGGTGCCACTGCGGTCCTCCTA
CTCGTCCTGGATCGAAAGTTACGATATACACGTACTGTAGCCAGCATTGC
CGGTAAAATGGGGGGCACCTGAGAGGGCCTGATGCCAAACTACTATGTAG
GATTTGGTATAGGTGGGGTTGCGTTTGTTGCCGATTGTGCTGAACAATAT
AAAATTTGACTAATTCGAGGGCACTGATTTGCATGGTGCGATTATTTTTT
GCTGATTCATCATGGTTCCCGAGAGAAGTGGGTACGCCCTATCGCAAAAT
TGTTTTACGTGGACCCTAGTCTTGGGACGGGACCCGGAACTCGCATGCCA
TCACGATAACTATTATATATATATATGTACTCATATGTACTCACGTGGTG
CTTGCTGTAGTCCCGAGACCATTGACCCCGCGCCTCGTTCGAGACGGAGC
AGGTCCCCTCCCTCCCCTGGCAGAGCCAGGGTGGGGGGTGTGTACTACAG
TGAAAAAAAGGCAGATGAAACACGTCTCAAGGGAACAAACGGGACTGCAA
CGCCCCCCGCCCCCCTCCTGTCTCCCCCCCCCCCCCCCCTCCCCTCCCCT
CCCTCCCCCCCCACACCTGTCACGCGCCACCCACCGCGCAGACGACGACA
GCGTTCGAGACGGTTTCGTGCGTTCCAAGCAGGAGGCGGCGAGCAGCTTT
GGGGACGACCGCATGCTGCTAGAGAAGTACATTGAGGACGGGCACCACAT
TGAGATTCAGGCGAGCGAGGCATGGCAGAGGGACGAGCGTGGCACGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2088667..2093165+

>mRNA_S-ischiensis_contig8.19548.1 ID=mRNA_S-ischiensis_contig8.19548.1|Name=mRNA_S-ischiensis_contig8.19548.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig8:2088667..2093165+ (Schizocladia ischiensis KU_0333)
CCTTTCGAGAAGATCCTCATCGCAAACCGCGGAGAGATTGCATGCCGGGT
CATGCGAACGGCGCGGCGCATGGGCGTGCGCACAGTGGCCGTCTACAGCG
ATGTGGACGACCAGTCCCCCCACGTGCGCATGGCGGATGAAGGTGTCTGC
ATTGGCCCGGCCCAGGCTCTGCAGAGCTACTTGGTCGTGGACAAGGTCTT
GGACGCCATGAACCTTTCGAGAAGATCCTCATCGCAAACCGCGGAGAGAT
TGCATGCCGGGTCATGCGAACGGCGCGGCGCATGGGCGTGCGCACAGTGG
CCGTCTACAGCGATGTGGACGACCAGTCCCCCCACGTGCGCATGGCGGAT
GAAGGTGTCTGCATTGGCCCGGCCCAGGCTCTGCAGAGCTACTTGGTCGT
GGACAAGGTCTTGGACGCCATGAAATTGACGGGCGCACAGGCGGTGCACC
CGGGCTACGGCTTCCTGAGCGAGAACATGGCCTTCGCGGATGCCTGCGAG
AAGGAGGACTTGGTGTTCATCGGGCCCCCATCTTCCGCAATCGAGAGCAT
GGGCGACAAGATCCGCTCAAAGGAGATTGCCCGCGAGGCCGGCGTCAGCA
CCATCCCGGGCTTCAAGATTGACGGGCGCACAGGCGGTGCACCCGGGCTA
CGGCTTCCTGAGCGAGAACATGGCCTTCGCGGATGCCTGCGAGAAGGAGG
ACTTGGTGTTCATCGGGCCCCCATCTTCCGCAATCGAGAGCATGGGCGAC
AAGATCCGCTCAAAGGAGATTGCCCGCGAGGCCGGCGTCAGCACCATCCC
GGGCTTCAAGGGCGTGATCGACTCCACTGAGGAAGCGGTGAAGATAGCTC
AGGACATTGGCTACCCCGTCATGATGAAGGCCAGCGCTGGCGGCGGTGGC
AAGGGCATGAGGATTGCCTACGGGCGTGATCGACTCCACTGAGGAAGCGG
TGAAGATAGCTCAGGACATTGGCTACCCCGTCATGATGAAGGCCAGCGCT
GGCGGCGGTGGCAAGGGCATGAGGATTGCCTACGACGACGACAGCGTTCG
AGACGGTTTCGTGCGTTCCAAGCAGGAGGCGGCGAGCAGCTTTGGGGACG
ACCGCATGCTGCTAGAGAAGTACATTGAGGACGGGCACCACATTGAGATT
CAGGCGAGCGAGGCATGGCAGAGGGACGAGCGTGGCACGTGAACGACGAC
AGCGTTCGAGACGGTTTCGTGCGTTCCAAGCAGGAGGCGGCGAGCAGCTT
TGGGGACGACCGCATGCTGCTAGAGAAGTACATTGAGGACGGGCACCACA
TTGAGATTCAGGCGAGCGAGGCATGGCAGAGGGACGAGCGTGGCACGTGA
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