mRNA_S-ischiensis_contig8.19542.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19542.1
Unique NamemRNA_S-ischiensis_contig8.19542.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2063183..2063825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.2358727-CDS-S-ischiensis_contig8:2063182..20636711622817267.2358727-CDS-S-ischiensis_contig8:2063182..2063671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2063183..2063671 +
1695740981.366837-CDS-S-ischiensis_contig8:2063182..20636711695740981.366837-CDS-S-ischiensis_contig8:2063182..2063671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2063183..2063671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.2486887-UTR-S-ischiensis_contig8:2063671..20638251622817267.2486887-UTR-S-ischiensis_contig8:2063671..2063825Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2063672..2063825 +
1695740981.37691-UTR-S-ischiensis_contig8:2063671..20638251695740981.37691-UTR-S-ischiensis_contig8:2063671..2063825Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2063672..2063825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19542.1prot_S-ischiensis_contig8.19542.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2063183..2063671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19542.1

>prot_S-ischiensis_contig8.19542.1 ID=prot_S-ischiensis_contig8.19542.1|Name=mRNA_S-ischiensis_contig8.19542.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
WCPPPWRGAPPPRAIVAASAAASAALGPAPATAATAVSVDAAAPGLQVSG
SPPPRRRTPAGGTQSGSELSACLGLWPATGESEAAAADNGPGSAPSPGLG
RGHPGPSRGARCASGWVCPWGLSVRQTAALSEPSRSPRSSGGPGAAAASR
PGARAATGTLVP*
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mRNA from alignment at S-ischiensis_contig8:2063183..2063825+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19542.1 ID=mRNA_S-ischiensis_contig8.19542.1|Name=mRNA_S-ischiensis_contig8.19542.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=643bp|location=Sequence derived from alignment at S-ischiensis_contig8:2063183..2063825+ (Schizocladia ischiensis KU_0333)
TGGTGCCCCCCGCCCTGGAGGGGGGCGCCACCGCCGCGTGCCATAGTGGC
TGCCTCTGCCGCTGCGAGCGCTGCCCTGGGCCCAGCCCCTGCCACGGCCG
CCACAGCTGTCTCAGTCGACGCGGCCGCCCCGGGCCTCCAAGTCTCGGGC
TCGCCCCCCCCCCGGCGCCGCACGCCAGCTGGCGGCACGCAGAGTGGATC
GGAGCTGTCCGCGTGCCTCGGGCTGTGGCCAGCCACAGGCGAGTCTGAGG
CAGCCGCAGCCGACAATGGGCCGGGCAGCGCTCCGAGTCCGGGACTCGGA
CGCGGACACCCCGGCCCATCTCGGGGCGCCCGGTGTGCCTCAGGCTGGGT
CTGCCCGTGGGGGCTGTCCGTCCGCCAGACTGCGGCACTGTCCGAGCCTT
CAAGATCGCCGCGCTCTTCGGGCGGGCCCGGCGCCGCCGCCGCCAGCCGC
CCGGGCGCACGCGCGGCCACTGGCACCCTCGTGCCATAGTCACGGTGATA
CGCGGCCGCCGCTGGCGCCTTGGGCCCCAGGCCTTCCTCCGCCCGGGCCC
AGGGGAGCTGGTAGTGGTCCCCGTCACGGTCCCGCCCCCCTGGGCCCGGC
CCGGCGGCGGCGGTGGCAGGGCCACAGCTGTTCATGCCAGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2063183..2063825+

>mRNA_S-ischiensis_contig8.19542.1 ID=mRNA_S-ischiensis_contig8.19542.1|Name=mRNA_S-ischiensis_contig8.19542.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig8:2063183..2063825+ (Schizocladia ischiensis KU_0333)
TGGTGCCCCCCGCCCTGGAGGGGGGCGCCACCGCCGCGTGCCATAGTGGC
TGCCTCTGCCGCTGCGAGCGCTGCCCTGGGCCCAGCCCCTGCCACGGCCG
CCACAGCTGTCTCAGTCGACGCGGCCGCCCCGGGCCTCCAAGTCTCGGGC
TCGCCCCCCCCCCGGCGCCGCACGCCAGCTGGCGGCACGCAGAGTGGATC
GGAGCTGTCCGCGTGCCTCGGGCTGTGGCCAGCCACAGGCGAGTCTGAGG
CAGCCGCAGCCGACAATGGGCCGGGCAGCGCTCCGAGTCCGGGACTCGGA
CGCGGACACCCCGGCCCATCTCGGGGCGCCCGGTGTGCCTCAGGCTGGGT
CTGCCCGTGGGGGCTGTCCGTCCGCCAGACTGCGGCACTGTCCGAGCCTT
CAAGATCGCCGCGCTCTTCGGGCGGGCCCGGCGCCGCCGCCGCCAGCCGC
CCGGGCGCACGCGCGGCCACTGGCACCCTCGTGCCATAGTGGTGCCCCCC
GCCCTGGAGGGGGGCGCCACCGCCGCGTGCCATAGTGGCTGCCTCTGCCG
CTGCGAGCGCTGCCCTGGGCCCAGCCCCTGCCACGGCCGCCACAGCTGTC
TCAGTCGACGCGGCCGCCCCGGGCCTCCAAGTCTCGGGCTCGCCCCCCCC
CCGGCGCCGCACGCCAGCTGGCGGCACGCAGAGTGGATCGGAGCTGTCCG
CGTGCCTCGGGCTGTGGCCAGCCACAGGCGAGTCTGAGGCAGCCGCAGCC
GACAATGGGCCGGGCAGCGCTCCGAGTCCGGGACTCGGACGCGGACACCC
CGGCCCATCTCGGGGCGCCCGGTGTGCCTCAGGCTGGGTCTGCCCGTGGG
GGCTGTCCGTCCGCCAGACTGCGGCACTGTCCGAGCCTTCAAGATCGCCG
CGCTCTTCGGGCGGGCCCGGCGCCGCCGCCGCCAGCCGCCCGGGCGCACG
CGCGGCCACTGGCACCCTCGTGCCATAG
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