mRNA_S-ischiensis_contig8.19541.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19541.1
Unique NamemRNA_S-ischiensis_contig8.19541.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2059234..2061916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2460
Cds size1806
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19541.1prot_S-ischiensis_contig8.19541.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2059368..2061396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.0981505-UTR-S-ischiensis_contig8:2059233..20593671622817260.0981505-UTR-S-ischiensis_contig8:2059233..2059367Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2059234..2059367 +
1695740976.8123045-UTR-S-ischiensis_contig8:2059233..20593671695740976.8123045-UTR-S-ischiensis_contig8:2059233..2059367Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2059234..2059367 +
1622817260.1405222-UTR-S-ischiensis_contig8:2061396..20619161622817260.1405222-UTR-S-ischiensis_contig8:2061396..2061916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2061397..2061916 +
1695740976.844987-UTR-S-ischiensis_contig8:2061396..20619161695740976.844987-UTR-S-ischiensis_contig8:2061396..2061916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2061397..2061916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.11192-CDS-S-ischiensis_contig8:2059367..20595101622817260.11192-CDS-S-ischiensis_contig8:2059367..2059510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2059368..2059510 +
1695740976.8234696-CDS-S-ischiensis_contig8:2059367..20595101695740976.8234696-CDS-S-ischiensis_contig8:2059367..2059510Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2059368..2059510 +
1622817260.1263883-CDS-S-ischiensis_contig8:2059733..20613961622817260.1263883-CDS-S-ischiensis_contig8:2059733..2061396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2059734..2061396 +
1695740976.8339918-CDS-S-ischiensis_contig8:2059733..20613961695740976.8339918-CDS-S-ischiensis_contig8:2059733..2061396Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2059734..2061396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19541.1

>prot_S-ischiensis_contig8.19541.1 ID=prot_S-ischiensis_contig8.19541.1|Name=mRNA_S-ischiensis_contig8.19541.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=602bp
MERDAKRVAREPATAVRELAKGLFERLDTNNTRDVVSFLRTNDVVRLMSC
SRAMKRTVPDLVDRVDLCGHSMCKGSVTGMLPLHSLRPFRAVRRLDVSCM
PSGEAGDGLDYETFLPNLTYCLTLFSNLEELRITDDDILEMVDVLRSFLP
PSIRVLRLGTDEPTQASLCKSEPPPGSKVVQLFASRRWPCLTHLELSGNW
LSEDTVASVVSVLSERWGTLRQLEGLTLAPTGVSPDTSTRVCEALGVALR
ASGGQNRLRALRLAGSLQFPGRGVAALAEACTPAHCPELAELHLAGDCRL
DDAALCHLSHALRRCTSLRSLSVGLAGVRERSVGAEALAAALGGEEHLRG
LESLNVQHGRSLHEVTMRALLQSAGGAALKTLDLRGNRLGRGLSGDLAAA
LERCGPWLEELDLSHNMLDDSSILLLATTVAERCPRLRRLRLGDNLLGDV
GAVGALAALQRLQHLEELDLLSLSVLGGTGLTPAGVVLLGKQLLAGRGAL
GLKVLLPQDSVSVAHGCLYMDAAGMVRQACSMERVLQCLDHVEGTRLLGA
AALVVRGEGRCHGCGPGVGAAARGGDSGSSGGHCTGACGGRADHVQAVFY
A*
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mRNA from alignment at S-ischiensis_contig8:2059234..2061916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19541.1 ID=mRNA_S-ischiensis_contig8.19541.1|Name=mRNA_S-ischiensis_contig8.19541.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2683bp|location=Sequence derived from alignment at S-ischiensis_contig8:2059234..2061916+ (Schizocladia ischiensis KU_0333)
CTTGGCAACGTGCCTGTGCTTGCGCTGCCTTCGCCTGGAACACGCAGCTG
CTTGAGCGCCCTGCGCTGCAAACCTACCCGGTAAAGGCACATCGGAATAG
GCCCAGGATACCCAACAGTCCGACGTGGAACAGCATGGAACGGGATGCGA
AACGCGTAGCACGCGAGCCCGCAACTGCAGTCCGGGAGCTGGCCAAGGGG
CTGTTCGAGAGACTGGACACAAACAACACGCGGGATGTTGTGTCCTTCCT
TCGCACCAACGACGTTGTTCGCCTCATGTGAGACTTTTGAAAGCAGACCG
GTCGTGTTTGGCCTTGCCATGCTTGTAGGCTCTATTGCCTGATTTCGTGT
TGACCAGCCCACCCCGCCCTCGAGTGGCTGTGCTCTGGGACTGCATCGTG
TCTGTCCCTGTATAGCGTCTCGTGTATCCACAGGCTCGGGACGTCCCCGT
ATCGCGGGACCTGACCCTGCCCTCCCAAATGATCTACCCCCAACCTGCAG
GTCGTGCTCGCGCGCCATGAAGCGCACGGTGCCGGACTTGGTGGACCGGG
TGGACCTGTGCGGCCACTCTATGTGCAAGGGCTCGGTCACCGGCATGCTG
CCTCTCCACTCGCTCAGGCCCTTCCGCGCAGTGCGGCGCTTGGACGTGAG
CTGCATGCCGTCCGGTGAGGCCGGGGACGGCCTCGACTACGAGACCTTCC
TGCCGAACCTGACCTACTGCCTGACCTTGTTCAGCAACCTGGAGGAACTG
CGTATCACAGACGACGACATCCTCGAGATGGTCGACGTGCTGCGGTCCTT
CCTCCCCCCGAGCATCCGGGTCCTCCGGCTCGGCACAGACGAGCCGACCC
AGGCCTCCCTGTGCAAGTCCGAGCCGCCGCCGGGCAGCAAGGTGGTGCAG
CTCTTTGCGAGCCGCCGCTGGCCCTGCCTGACACACCTGGAGCTGAGCGG
CAACTGGCTCAGTGAAGATACCGTGGCCTCGGTGGTGTCCGTCCTGTCGG
AGCGCTGGGGGACGCTGCGGCAGCTGGAGGGGCTCACCCTCGCTCCAACG
GGGGTCTCCCCCGACACAAGCACGCGGGTCTGCGAGGCTCTGGGCGTGGC
CCTGCGCGCCTCGGGCGGGCAAAACCGCCTGCGTGCCTTGCGGCTGGCCG
GCTCGCTGCAGTTCCCGGGCCGCGGCGTGGCGGCCCTCGCGGAGGCGTGC
ACGCCTGCCCACTGCCCGGAGCTCGCGGAGCTTCACCTGGCCGGGGACTG
CCGCCTGGACGACGCAGCCCTGTGTCACCTCTCCCACGCGCTCCGCCGGT
GCACCTCCCTGCGCAGCCTCAGCGTTGGCCTGGCCGGGGTGCGGGAGCGG
TCGGTGGGCGCGGAGGCCCTGGCCGCGGCGCTGGGCGGGGAGGAGCACCT
CCGCGGGCTGGAGTCCCTCAACGTGCAGCACGGGCGCAGCCTGCACGAGG
TGACCATGCGCGCACTGCTGCAGTCCGCGGGCGGGGCCGCTCTCAAGACC
CTGGACCTCCGCGGCAACCGCCTGGGCCGGGGGTTGAGCGGGGACCTGGC
GGCGGCGCTGGAGCGCTGCGGCCCTTGGCTGGAGGAGCTGGACCTGAGCC
ACAACATGCTGGACGACAGCAGCATCCTGCTCCTGGCCACGACCGTGGCC
GAGCGCTGCCCGCGGCTCCGGCGCCTGCGGCTGGGCGACAACCTCCTGGG
GGACGTGGGCGCCGTGGGCGCCCTCGCGGCGCTGCAGCGCCTGCAACACC
TCGAGGAGCTGGACCTCCTGTCGCTCTCCGTGCTCGGGGGGACGGGCCTA
ACGCCTGCCGGGGTGGTGCTCCTCGGCAAGCAGCTCCTGGCTGGCCGGGG
GGCCCTGGGGCTGAAGGTGCTGCTGCCGCAGGACTCCGTGTCTGTGGCCC
ATGGGTGCCTGTACATGGACGCGGCCGGCATGGTGCGCCAGGCCTGCTCT
ATGGAGCGTGTGTTGCAATGCCTCGACCACGTGGAGGGCACCCGGCTGCT
GGGCGCAGCGGCGCTCGTCGTGCGGGGCGAGGGCCGCTGCCACGGGTGTG
GGCCGGGGGTGGGGGCGGCGGCGAGAGGCGGCGACAGCGGTAGCTCCGGC
GGCCACTGCACCGGCGCCTGCGGAGGGCGGGCGGACCATGTTCAGGCTGT
GTTCTACGCGTGAACGCGGCCTCCGACGAGTGTTTAGGTTGCGTACAAAT
TTATGTTCTGCATTAGCAACATATGCATTTGTGCATCCAGCAGTTTTGTA
GTCGTACTTCGTAGTTACTGACAAGTATCCAGCAGTTTTTGTTAGTCCAA
GCATCCAGCAGTTTTTGTTAATACCACGAAGTACTTCAAAGTAAATCACC
TTGATACGGCATTCGTGTCAAGCACACAGGCAGCGATCAAACCAGGTGCG
CACTGTGCTTGCGCTGCCTTGGCCTGGAACACACAGCATGAGCGCCCTGC
GCTGCCAACCTACTTGGAAGCACCCGGTACAAGCTCAACGGAATGGCCCA
GGAGACCCACTCAGCCGCAGCCCAGCATGGAGTGGGATGCGAAACGCGTG
GCACGTGAGCCCGCAGTGCAGTATGCATTACTGTACAGTGCCTCCGGTAC
AACAGTCCTGCCGCCCCGTCGCCTGCCACACCCCCCCCCGGGGGCACACA
CACACACACCGTTCCCTTCCCCTCCTTCCTCAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2059234..2061916+

>mRNA_S-ischiensis_contig8.19541.1 ID=mRNA_S-ischiensis_contig8.19541.1|Name=mRNA_S-ischiensis_contig8.19541.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3612bp|location=Sequence derived from alignment at S-ischiensis_contig8:2059234..2061916+ (Schizocladia ischiensis KU_0333)
ATGGAACGGGATGCGAAACGCGTAGCACGCGAGCCCGCAACTGCAGTCCG
GGAGCTGGCCAAGGGGCTGTTCGAGAGACTGGACACAAACAACACGCGGG
ATGTTGTGTCCTTCCTTCGCACCAACGACGTTGTTCGCCTCATATGGAAC
GGGATGCGAAACGCGTAGCACGCGAGCCCGCAACTGCAGTCCGGGAGCTG
GCCAAGGGGCTGTTCGAGAGACTGGACACAAACAACACGCGGGATGTTGT
GTCCTTCCTTCGCACCAACGACGTTGTTCGCCTCATGTCGTGCTCGCGCG
CCATGAAGCGCACGGTGCCGGACTTGGTGGACCGGGTGGACCTGTGCGGC
CACTCTATGTGCAAGGGCTCGGTCACCGGCATGCTGCCTCTCCACTCGCT
CAGGCCCTTCCGCGCAGTGCGGCGCTTGGACGTGAGCTGCATGCCGTCCG
GTGAGGCCGGGGACGGCCTCGACTACGAGACCTTCCTGCCGAACCTGACC
TACTGCCTGACCTTGTTCAGCAACCTGGAGGAACTGCGTATCACAGACGA
CGACATCCTCGAGATGGTCGACGTGCTGCGGTCCTTCCTCCCCCCGAGCA
TCCGGGTCCTCCGGCTCGGCACAGACGAGCCGACCCAGGCCTCCCTGTGC
AAGTCCGAGCCGCCGCCGGGCAGCAAGGTGGTGCAGCTCTTTGCGAGCCG
CCGCTGGCCCTGCCTGACACACCTGGAGCTGAGCGGCAACTGGCTCAGTG
AAGATACCGTGGCCTCGGTGGTGTCCGTCCTGTCGGAGCGCTGGGGGACG
CTGCGGCAGCTGGAGGGGCTCACCCTCGCTCCAACGGGGGTCTCCCCCGA
CACAAGCACGCGGGTCTGCGAGGCTCTGGGCGTGGCCCTGCGCGCCTCGG
GCGGGCAAAACCGCCTGCGTGCCTTGCGGCTGGCCGGCTCGCTGCAGTTC
CCGGGCCGCGGCGTGGCGGCCCTCGCGGAGGCGTGCACGCCTGCCCACTG
CCCGGAGCTCGCGGAGCTTCACCTGGCCGGGGACTGCCGCCTGGACGACG
CAGCCCTGTGTCACCTCTCCCACGCGCTCCGCCGGTGCACCTCCCTGCGC
AGCCTCAGCGTTGGCCTGGCCGGGGTGCGGGAGCGGTCGGTGGGCGCGGA
GGCCCTGGCCGCGGCGCTGGGCGGGGAGGAGCACCTCCGCGGGCTGGAGT
CCCTCAACGTGCAGCACGGGCGCAGCCTGCACGAGGTGACCATGCGCGCA
CTGCTGCAGTCCGCGGGCGGGGCCGCTCTCAAGACCCTGGACCTCCGCGG
CAACCGCCTGGGCCGGGGGTTGAGCGGGGACCTGGCGGCGGCGCTGGAGC
GCTGCGGCCCTTGGCTGGAGGAGCTGGACCTGAGCCACAACATGCTGGAC
GACAGCAGCATCCTGCTCCTGGCCACGACCGTGGCCGAGCGCTGCCCGCG
GCTCCGGCGCCTGCGGCTGGGCGACAACCTCCTGGGGGACGTGGGCGCCG
TGGGCGCCCTCGCGGCGCTGCAGCGCCTGCAACACCTCGAGGAGCTGGAC
CTCCTGTCGCTCTCCGTGCTCGGGGGGACGGGCCTAACGCCTGCCGGGGT
GGTGCTCCTCGGCAAGCAGCTCCTGGCTGGCCGGGGGGCCCTGGGGCTGA
AGGTGCTGCTGCCGCAGGACTCCGTGTCTGTGGCCCATGGGTGCCTGTAC
ATGGACGCGGCCGGCATGGTGCGCCAGGCCTGCTCTATGGAGCGTGTGTT
GCAATGCCTCGACCACGTGGAGGGCACCCGGCTGCTGGGCGCAGCGGCGC
TCGTCGTGCGGGGCGAGGGCCGCTGCCACGGGTGTGGGCCGGGGGTGGGG
GCGGCGGCGAGAGGCGGCGACAGCGGTAGCTCCGGCGGCCACTGCACCGG
CGCCTGCGGAGGGCGGGCGGACCATGTTCAGGCTGTGTTCTACGCGTGAG
TCGTGCTCGCGCGCCATGAAGCGCACGGTGCCGGACTTGGTGGACCGGGT
GGACCTGTGCGGCCACTCTATGTGCAAGGGCTCGGTCACCGGCATGCTGC
CTCTCCACTCGCTCAGGCCCTTCCGCGCAGTGCGGCGCTTGGACGTGAGC
TGCATGCCGTCCGGTGAGGCCGGGGACGGCCTCGACTACGAGACCTTCCT
GCCGAACCTGACCTACTGCCTGACCTTGTTCAGCAACCTGGAGGAACTGC
GTATCACAGACGACGACATCCTCGAGATGGTCGACGTGCTGCGGTCCTTC
CTCCCCCCGAGCATCCGGGTCCTCCGGCTCGGCACAGACGAGCCGACCCA
GGCCTCCCTGTGCAAGTCCGAGCCGCCGCCGGGCAGCAAGGTGGTGCAGC
TCTTTGCGAGCCGCCGCTGGCCCTGCCTGACACACCTGGAGCTGAGCGGC
AACTGGCTCAGTGAAGATACCGTGGCCTCGGTGGTGTCCGTCCTGTCGGA
GCGCTGGGGGACGCTGCGGCAGCTGGAGGGGCTCACCCTCGCTCCAACGG
GGGTCTCCCCCGACACAAGCACGCGGGTCTGCGAGGCTCTGGGCGTGGCC
CTGCGCGCCTCGGGCGGGCAAAACCGCCTGCGTGCCTTGCGGCTGGCCGG
CTCGCTGCAGTTCCCGGGCCGCGGCGTGGCGGCCCTCGCGGAGGCGTGCA
CGCCTGCCCACTGCCCGGAGCTCGCGGAGCTTCACCTGGCCGGGGACTGC
CGCCTGGACGACGCAGCCCTGTGTCACCTCTCCCACGCGCTCCGCCGGTG
CACCTCCCTGCGCAGCCTCAGCGTTGGCCTGGCCGGGGTGCGGGAGCGGT
CGGTGGGCGCGGAGGCCCTGGCCGCGGCGCTGGGCGGGGAGGAGCACCTC
CGCGGGCTGGAGTCCCTCAACGTGCAGCACGGGCGCAGCCTGCACGAGGT
GACCATGCGCGCACTGCTGCAGTCCGCGGGCGGGGCCGCTCTCAAGACCC
TGGACCTCCGCGGCAACCGCCTGGGCCGGGGGTTGAGCGGGGACCTGGCG
GCGGCGCTGGAGCGCTGCGGCCCTTGGCTGGAGGAGCTGGACCTGAGCCA
CAACATGCTGGACGACAGCAGCATCCTGCTCCTGGCCACGACCGTGGCCG
AGCGCTGCCCGCGGCTCCGGCGCCTGCGGCTGGGCGACAACCTCCTGGGG
GACGTGGGCGCCGTGGGCGCCCTCGCGGCGCTGCAGCGCCTGCAACACCT
CGAGGAGCTGGACCTCCTGTCGCTCTCCGTGCTCGGGGGGACGGGCCTAA
CGCCTGCCGGGGTGGTGCTCCTCGGCAAGCAGCTCCTGGCTGGCCGGGGG
GCCCTGGGGCTGAAGGTGCTGCTGCCGCAGGACTCCGTGTCTGTGGCCCA
TGGGTGCCTGTACATGGACGCGGCCGGCATGGTGCGCCAGGCCTGCTCTA
TGGAGCGTGTGTTGCAATGCCTCGACCACGTGGAGGGCACCCGGCTGCTG
GGCGCAGCGGCGCTCGTCGTGCGGGGCGAGGGCCGCTGCCACGGGTGTGG
GCCGGGGGTGGGGGCGGCGGCGAGAGGCGGCGACAGCGGTAGCTCCGGCG
GCCACTGCACCGGCGCCTGCGGAGGGCGGGCGGACCATGTTCAGGCTGTG
TTCTACGCGTGA
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