mRNA_S-ischiensis_contig8.19540.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19540.1
Unique NamemRNA_S-ischiensis_contig8.19540.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2055557..2058843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3011
Cds size1980
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19540.1prot_S-ischiensis_contig8.19540.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2056513..2058768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.016685-UTR-S-ischiensis_contig8:2055556..20565121622817260.016685-UTR-S-ischiensis_contig8:2055556..2056512Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2055557..2056512 -
1695740976.7584517-UTR-S-ischiensis_contig8:2055556..20565121695740976.7584517-UTR-S-ischiensis_contig8:2055556..2056512Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2055557..2056512 -
1622817260.0608602-UTR-S-ischiensis_contig8:2058768..20588431622817260.0608602-UTR-S-ischiensis_contig8:2058768..2058843Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2058769..2058843 -
1695740976.8008769-UTR-S-ischiensis_contig8:2058768..20588431695740976.8008769-UTR-S-ischiensis_contig8:2058768..2058843Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2058769..2058843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.0320482-CDS-S-ischiensis_contig8:2056512..20581751622817260.0320482-CDS-S-ischiensis_contig8:2056512..2058175Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2056513..2058175 -
1695740976.771623-CDS-S-ischiensis_contig8:2056512..20581751695740976.771623-CDS-S-ischiensis_contig8:2056512..2058175Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2056513..2058175 -
1622817260.049052-CDS-S-ischiensis_contig8:2058451..20587681622817260.049052-CDS-S-ischiensis_contig8:2058451..2058768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2058452..2058768 -
1695740976.7870991-CDS-S-ischiensis_contig8:2058451..20587681695740976.7870991-CDS-S-ischiensis_contig8:2058451..2058768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2058452..2058768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19540.1

>prot_S-ischiensis_contig8.19540.1 ID=prot_S-ischiensis_contig8.19540.1|Name=mRNA_S-ischiensis_contig8.19540.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=660bp
MPPCEASVGAANMASSWQRACACAAFAWNTPSSPERSALQYYPVKSHRKT
PASPTRTWPGKDRDAKRVAQEPAVGEPGMGLFGQLDADNTRDVVSFLRTS
DVVRLMSCSRAMKRAVPDLVDRVDLCGHSMCKGSVTGMMPLHSLRPFRAV
RRLDVCCMPSVEAGDDLEYFSFLPNLTYCLTLFNNLEELRITDDDILEMV
DVLRSFLPPSIRVLQLGTEEPAQASPNRVVPSGGKVVQLFASRRWPCLTH
LELSGDWLSEETLASVVSVLSERGTLRQLEGLTLGPTVMSPKAGGRVCEA
LSVALRASGGRNRLRALRLAGSLQFPGCSVAALAEACTPAHCPELAELLL
DGGCRLDDAALCHLSDLLRQCTSLRSLSVGLAGVWGRSVGAEALAAALGG
EEHLRGLESLNVQHGRSLHEVTVRALLQSAGGAALKTLDLRGNRLGRGLS
GDLAAALERCGPWLEELDLSHNMLDDSSILLLATTVAERCPRLRRLRLGD
NLLGDVGAVGALAALQRLQHLEELDLLSHSVLGGTGLTPAGVVLLGKQLL
AGQGALGLRVLLPQDSVSVAHGCLYMDAAGVVREACTMECVVQCLDYVEG
TRLLGAAALVVRGEGRCHGCGPGVVAAVAGAGGGSGSSGGRCTGACGGRA
DRVQAVFYA*
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mRNA from alignment at S-ischiensis_contig8:2055557..2058843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19540.1 ID=mRNA_S-ischiensis_contig8.19540.1|Name=mRNA_S-ischiensis_contig8.19540.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3287bp|location=Sequence derived from alignment at S-ischiensis_contig8:2055557..2058843- (Schizocladia ischiensis KU_0333)
GCACACCTGGTTTGATCACTGCCTGTGCAAAGGGAACCCTGGTTATTTGG
CTGGTTATTTGGCTTGTCTTGAGCGATGCCTCCGTGCGAGGCCTCCGTCG
GAGCCGCCAACATGGCGAGCTCTTGGCAGCGAGCCTGTGCTTGCGCTGCC
TTCGCCTGGAACACGCCAAGCTCGCCTGAGCGCTCTGCGCTGCAATATTA
CCCGGTAAAATCTCACCGGAAGACGCCCGCGAGCCCCACTCGGACTTGGC
CGGGCAAGGATCGGGATGCGAAACGCGTGGCACAAGAGCCCGCAGTGGGG
GAGCCGGGCATGGGCCTGTTCGGGCAACTGGACGCAGACAACACGCGGGA
TGTTGTCTCATTTCTTCGCACCAGCGATGTGGTTCGCCTCATGTGAGCCT
ATACACACACCATGCTTGTTAAACGCGCTTGGTTGAGTAGCGTAGAACAT
CCCCAGGCCTGTGGGTGGGCTGGATGGCCTCTGTGGCATTTGCATCTCGT
TTTCCCTTTTGAGGCTGTGCTGTGATGTACCCGTTTCCAGTGGATGCTTT
CTTTTTCCTCATGAGTTGTCTCGTGCGTCCATGGGCCTGTGCCGCATTGT
CCCCTCGTCCTGAGACCTGACCCTTGTTGTCCCGCTCTCCTAACCTGTGC
CTGAAACCCCAACTGCAGGTCGTGCTCGCGAGCCATGAAGCGTGCGGTGC
CGGACTTGGTGGACCGGGTTGACCTTTGTGGCCACTCTATGTGCAAGGGC
TCGGTCACCGGCATGATGCCTCTGCACTCGCTCAGGCCCTTCCGGGCGGT
GCGGCGCTTGGACGTGTGCTGCATGCCGTCCGTGGAGGCCGGCGACGACC
TCGAGTATTTCAGCTTCCTGCCGAACCTGACCTACTGCCTAACCTTGTTC
AACAACCTGGAGGAGCTGCGTATCACGGACGACGACATCCTCGAGATGGT
CGACGTGCTGCGGTCCTTCCTCCCCCCCAGCATCCGGGTCCTCCAGCTCG
GCACGGAGGAGCCGGCCCAGGCCTCGCCCAACAGGGTCGTGCCATCGGGC
GGCAAGGTGGTGCAGCTCTTTGCGAGCCGCCGCTGGCCCTGCCTGACACA
CCTGGAGCTGAGCGGTGACTGGCTCAGCGAAGAAACCCTGGCCTCGGTGG
TGTCCGTCCTGTCGGAGCGCGGGACGCTGCGGCAGCTGGAGGGGCTCACC
CTCGGCCCCACGGTGATGTCCCCCAAGGCGGGCGGGCGGGTCTGTGAGGC
CTTGAGCGTGGCCCTGCGCGCCTCGGGCGGGCGAAACCGCCTGCGTGCCT
TGCGGCTGGCCGGCTCACTGCAATTCCCGGGGTGCAGCGTGGCGGCCCTC
GCGGAGGCGTGCACGCCTGCCCACTGCCCGGAGCTCGCGGAGCTCCTCCT
GGATGGGGGCTGCCGCCTGGACGATGCGGCCCTGTGTCACCTATCCGACT
TGCTCCGCCAGTGCACCTCCCTGCGCAGCCTCAGCGTTGGCCTGGCCGGG
GTGTGGGGGCGGTCGGTGGGCGCGGAGGCCCTGGCGGCGGCGCTGGGCGG
GGAGGAGCACCTCCGCGGGCTGGAGTCCCTCAACGTGCAGCACGGGCGCA
GCCTGCACGAGGTGACCGTGCGCGCACTGCTGCAGTCCGCGGGCGGGGCC
GCTCTCAAGACCCTGGACCTCCGCGGCAACCGCCTGGGCCGGGGGTTGAG
CGGGGACCTGGCGGCGGCGCTGGAGCGCTGCGGCCCTTGGCTGGAGGAGC
TGGACTTGAGCCACAACATGCTGGACGACAGCAGCATCCTGCTCCTGGCC
ACGACCGTGGCCGAGCGCTGCCCGCGGCTCCGGCGCCTGCGGCTGGGCGA
CAACCTCCTGGGGGACGTGGGCGCCGTGGGCGCCCTCGCGGCGCTGCAGC
GCCTGCAACACCTCGAGGAGCTGGACCTCCTGTCGCACTCCGTGCTGGGG
GGGACGGGCCTAACGCCTGCCGGGGTGGTGCTCCTCGGCAAGCAGCTCCT
GGCTGGCCAGGGGGCTCTGGGGCTGAGGGTGCTGCTGCCGCAGGACTCCG
TGTCTGTGGCCCATGGGTGCCTGTACATGGACGCGGCCGGCGTGGTGCGC
GAGGCCTGCACCATGGAGTGCGTCGTGCAATGCCTCGACTACGTGGAGGG
CACCCGGCTGCTGGGCGCAGCGGCGCTCGTCGTGCGGGGCGAGGGCCGCT
GCCACGGGTGTGGGCCGGGGGTGGTGGCGGCGGTGGCAGGGGCAGGCGGC
GGCAGCGGCAGCTCCGGCGGCCGCTGCACCGGCGCCTGCGGAGGGCGGGC
GGACCGCGTTCAGGCTGTCTTCTATGCGTGAGCCCCCCCCCCCCGGGGGG
TGTTTAGCGTTGGCAGACGGCACCCTAGCTACCTATCTGCATAGAGCATT
TCTTGATTTAACATGACTGATTTATTCCCACATGAATGTGTCTCCTACTT
GTGCTGCTTCTACTGTGCAGCTGTCCGCTGCGTGCGTGTGCAGTGTCCCT
CCTCCCGGACGCCGTCTCGCCATCAATCCTGAGAAACTCGAGTTTTTTCA
TTGCCGCCCAAGGCCAAGCCGGCATATCCCCCTGGAGCAAAGGTCTGTAC
AAGTAAGCCTCAGTTGCAAACCGGTCCATGCTCAAGGACACGTGCGTGTC
ATGCCGCCGCCGCCTGATTGAATCCACCATGGTCTCGAAGTGGTCACCGG
ATCTGGGGGCGAGGTGCCAGCCACATGACTTTTTTTGGGGGGGGTTCTGC
CATTGCAGGGGTAGGGTACATCACCGGGCATTACGGACGACACTGCACGC
TGGGCTTGTCGCGCCCCTCCGCCGGAGGGCCGCGGGCAAAGGCGAAGGCT
GCAATGTTTTACCACCCTCCAAGATACTGCTGTATGGTCAGTGGTCTCGG
GACTACGGCAAGTACAACGTGAGTATATATATACTGTACTTAGAAGCCGC
GCCTGACGGCACACCAGTTACTTAGTTGCACACGCAGGACGTGCGTTCAC
GACAAGGGCGGCCTGTCAGCGCTGAGTGCAATAGGATGGCCTGTTCATGC
AACCGCTCCTCTCCACGAGCGTGGTACTGTAGGTATAGCTGGCTACCGCT
CGCCGCCGCCGCCGCCGCCGCCATTGTCTTGGGCATGACCAATATATGAC
GCCTTCGGGTGGAGCGAACACGGCCACGGACTGTCTTGGGCAGCGTGCCT
GTGCTTGCGCTACACTACCCTTCTCGTACAGTACCTTCGCCTGGAACACG
GCGCCCTTAGGCTAGCCCACTTGAGCGCTCTAGGTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2055557..2058843-

>mRNA_S-ischiensis_contig8.19540.1 ID=mRNA_S-ischiensis_contig8.19540.1|Name=mRNA_S-ischiensis_contig8.19540.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3960bp|location=Sequence derived from alignment at S-ischiensis_contig8:2055557..2058843- (Schizocladia ischiensis KU_0333)
ATGCCTCCGTGCGAGGCCTCCGTCGGAGCCGCCAACATGGCGAGCTCTTG
GCAGCGAGCCTGTGCTTGCGCTGCCTTCGCCTGGAACACGCCAAGCTCGC
CTGAGCGCTCTGCGCTGCAATATTACCCGGTAAAATCTCACCGGAAGACG
CCCGCGAGCCCCACTCGGACTTGGCCGGGCAAGGATCGGGATGCGAAACG
CGTGGCACAAGAGCCCGCAGTGGGGGAGCCGGGCATGGGCCTGTTCGGGC
AACTGGACGCAGACAACACGCGGGATGTTGTCTCATTTCTTCGCACCAGC
GATGTGGTTCGCCTCATATGCCTCCGTGCGAGGCCTCCGTCGGAGCCGCC
AACATGGCGAGCTCTTGGCAGCGAGCCTGTGCTTGCGCTGCCTTCGCCTG
GAACACGCCAAGCTCGCCTGAGCGCTCTGCGCTGCAATATTACCCGGTAA
AATCTCACCGGAAGACGCCCGCGAGCCCCACTCGGACTTGGCCGGGCAAG
GATCGGGATGCGAAACGCGTGGCACAAGAGCCCGCAGTGGGGGAGCCGGG
CATGGGCCTGTTCGGGCAACTGGACGCAGACAACACGCGGGATGTTGTCT
CATTTCTTCGCACCAGCGATGTGGTTCGCCTCATGTCGTGCTCGCGAGCC
ATGAAGCGTGCGGTGCCGGACTTGGTGGACCGGGTTGACCTTTGTGGCCA
CTCTATGTGCAAGGGCTCGGTCACCGGCATGATGCCTCTGCACTCGCTCA
GGCCCTTCCGGGCGGTGCGGCGCTTGGACGTGTGCTGCATGCCGTCCGTG
GAGGCCGGCGACGACCTCGAGTATTTCAGCTTCCTGCCGAACCTGACCTA
CTGCCTAACCTTGTTCAACAACCTGGAGGAGCTGCGTATCACGGACGACG
ACATCCTCGAGATGGTCGACGTGCTGCGGTCCTTCCTCCCCCCCAGCATC
CGGGTCCTCCAGCTCGGCACGGAGGAGCCGGCCCAGGCCTCGCCCAACAG
GGTCGTGCCATCGGGCGGCAAGGTGGTGCAGCTCTTTGCGAGCCGCCGCT
GGCCCTGCCTGACACACCTGGAGCTGAGCGGTGACTGGCTCAGCGAAGAA
ACCCTGGCCTCGGTGGTGTCCGTCCTGTCGGAGCGCGGGACGCTGCGGCA
GCTGGAGGGGCTCACCCTCGGCCCCACGGTGATGTCCCCCAAGGCGGGCG
GGCGGGTCTGTGAGGCCTTGAGCGTGGCCCTGCGCGCCTCGGGCGGGCGA
AACCGCCTGCGTGCCTTGCGGCTGGCCGGCTCACTGCAATTCCCGGGGTG
CAGCGTGGCGGCCCTCGCGGAGGCGTGCACGCCTGCCCACTGCCCGGAGC
TCGCGGAGCTCCTCCTGGATGGGGGCTGCCGCCTGGACGATGCGGCCCTG
TGTCACCTATCCGACTTGCTCCGCCAGTGCACCTCCCTGCGCAGCCTCAG
CGTTGGCCTGGCCGGGGTGTGGGGGCGGTCGGTGGGCGCGGAGGCCCTGG
CGGCGGCGCTGGGCGGGGAGGAGCACCTCCGCGGGCTGGAGTCCCTCAAC
GTGCAGCACGGGCGCAGCCTGCACGAGGTGACCGTGCGCGCACTGCTGCA
GTCCGCGGGCGGGGCCGCTCTCAAGACCCTGGACCTCCGCGGCAACCGCC
TGGGCCGGGGGTTGAGCGGGGACCTGGCGGCGGCGCTGGAGCGCTGCGGC
CCTTGGCTGGAGGAGCTGGACTTGAGCCACAACATGCTGGACGACAGCAG
CATCCTGCTCCTGGCCACGACCGTGGCCGAGCGCTGCCCGCGGCTCCGGC
GCCTGCGGCTGGGCGACAACCTCCTGGGGGACGTGGGCGCCGTGGGCGCC
CTCGCGGCGCTGCAGCGCCTGCAACACCTCGAGGAGCTGGACCTCCTGTC
GCACTCCGTGCTGGGGGGGACGGGCCTAACGCCTGCCGGGGTGGTGCTCC
TCGGCAAGCAGCTCCTGGCTGGCCAGGGGGCTCTGGGGCTGAGGGTGCTG
CTGCCGCAGGACTCCGTGTCTGTGGCCCATGGGTGCCTGTACATGGACGC
GGCCGGCGTGGTGCGCGAGGCCTGCACCATGGAGTGCGTCGTGCAATGCC
TCGACTACGTGGAGGGCACCCGGCTGCTGGGCGCAGCGGCGCTCGTCGTG
CGGGGCGAGGGCCGCTGCCACGGGTGTGGGCCGGGGGTGGTGGCGGCGGT
GGCAGGGGCAGGCGGCGGCAGCGGCAGCTCCGGCGGCCGCTGCACCGGCG
CCTGCGGAGGGCGGGCGGACCGCGTTCAGGCTGTCTTCTATGCGTGAGTC
GTGCTCGCGAGCCATGAAGCGTGCGGTGCCGGACTTGGTGGACCGGGTTG
ACCTTTGTGGCCACTCTATGTGCAAGGGCTCGGTCACCGGCATGATGCCT
CTGCACTCGCTCAGGCCCTTCCGGGCGGTGCGGCGCTTGGACGTGTGCTG
CATGCCGTCCGTGGAGGCCGGCGACGACCTCGAGTATTTCAGCTTCCTGC
CGAACCTGACCTACTGCCTAACCTTGTTCAACAACCTGGAGGAGCTGCGT
ATCACGGACGACGACATCCTCGAGATGGTCGACGTGCTGCGGTCCTTCCT
CCCCCCCAGCATCCGGGTCCTCCAGCTCGGCACGGAGGAGCCGGCCCAGG
CCTCGCCCAACAGGGTCGTGCCATCGGGCGGCAAGGTGGTGCAGCTCTTT
GCGAGCCGCCGCTGGCCCTGCCTGACACACCTGGAGCTGAGCGGTGACTG
GCTCAGCGAAGAAACCCTGGCCTCGGTGGTGTCCGTCCTGTCGGAGCGCG
GGACGCTGCGGCAGCTGGAGGGGCTCACCCTCGGCCCCACGGTGATGTCC
CCCAAGGCGGGCGGGCGGGTCTGTGAGGCCTTGAGCGTGGCCCTGCGCGC
CTCGGGCGGGCGAAACCGCCTGCGTGCCTTGCGGCTGGCCGGCTCACTGC
AATTCCCGGGGTGCAGCGTGGCGGCCCTCGCGGAGGCGTGCACGCCTGCC
CACTGCCCGGAGCTCGCGGAGCTCCTCCTGGATGGGGGCTGCCGCCTGGA
CGATGCGGCCCTGTGTCACCTATCCGACTTGCTCCGCCAGTGCACCTCCC
TGCGCAGCCTCAGCGTTGGCCTGGCCGGGGTGTGGGGGCGGTCGGTGGGC
GCGGAGGCCCTGGCGGCGGCGCTGGGCGGGGAGGAGCACCTCCGCGGGCT
GGAGTCCCTCAACGTGCAGCACGGGCGCAGCCTGCACGAGGTGACCGTGC
GCGCACTGCTGCAGTCCGCGGGCGGGGCCGCTCTCAAGACCCTGGACCTC
CGCGGCAACCGCCTGGGCCGGGGGTTGAGCGGGGACCTGGCGGCGGCGCT
GGAGCGCTGCGGCCCTTGGCTGGAGGAGCTGGACTTGAGCCACAACATGC
TGGACGACAGCAGCATCCTGCTCCTGGCCACGACCGTGGCCGAGCGCTGC
CCGCGGCTCCGGCGCCTGCGGCTGGGCGACAACCTCCTGGGGGACGTGGG
CGCCGTGGGCGCCCTCGCGGCGCTGCAGCGCCTGCAACACCTCGAGGAGC
TGGACCTCCTGTCGCACTCCGTGCTGGGGGGGACGGGCCTAACGCCTGCC
GGGGTGGTGCTCCTCGGCAAGCAGCTCCTGGCTGGCCAGGGGGCTCTGGG
GCTGAGGGTGCTGCTGCCGCAGGACTCCGTGTCTGTGGCCCATGGGTGCC
TGTACATGGACGCGGCCGGCGTGGTGCGCGAGGCCTGCACCATGGAGTGC
GTCGTGCAATGCCTCGACTACGTGGAGGGCACCCGGCTGCTGGGCGCAGC
GGCGCTCGTCGTGCGGGGCGAGGGCCGCTGCCACGGGTGTGGGCCGGGGG
TGGTGGCGGCGGTGGCAGGGGCAGGCGGCGGCAGCGGCAGCTCCGGCGGC
CGCTGCACCGGCGCCTGCGGAGGGCGGGCGGACCGCGTTCAGGCTGTCTT
CTATGCGTGA
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