mRNA_S-ischiensis_contig8.19528.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19528.1
Unique NamemRNA_S-ischiensis_contig8.19528.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19528.1 vs. uniprot
Match: D7FHT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.430e-20
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   76 LVKLLACCAAAQCAETHVCSRRTQSVGATPCPRCGGSGGGSEWALGFALSLCELFGCCVAQREEVLEIVTSRVVL 300
            L K L+CCAA+QCAETH+CSRR    GA PC  CGG+GGGSEWA  FA++LC++F C    + E L++V S V  
Sbjct:   22 LAKYLSCCAASQCAETHICSRRVAKAGAAPCKHCGGAGGGSEWAKTFAMALCDIFDCPAVVQREALDLVVSAVAF 96
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHT7_ECTSI4.430e-2056.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1953124..1956426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size532
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19528.1prot_S-ischiensis_contig8.19528.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1953125..1956426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.705031-CDS-S-ischiensis_contig8:1953124..19533881622817259.705031-CDS-S-ischiensis_contig8:1953124..1953388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1953125..1953388 -
1695740976.519125-CDS-S-ischiensis_contig8:1953124..19533881695740976.519125-CDS-S-ischiensis_contig8:1953124..1953388Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1953125..1953388 -
1622817259.7163515-CDS-S-ischiensis_contig8:1954672..19547991622817259.7163515-CDS-S-ischiensis_contig8:1954672..1954799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1954673..1954799 -
1695740976.5316236-CDS-S-ischiensis_contig8:1954672..19547991695740976.5316236-CDS-S-ischiensis_contig8:1954672..1954799Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1954673..1954799 -
1622817259.728835-CDS-S-ischiensis_contig8:1956286..19564261622817259.728835-CDS-S-ischiensis_contig8:1956286..1956426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1956287..1956426 -
1695740976.5438468-CDS-S-ischiensis_contig8:1956286..19564261695740976.5438468-CDS-S-ischiensis_contig8:1956286..1956426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1956287..1956426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19528.1

>prot_S-ischiensis_contig8.19528.1 ID=prot_S-ischiensis_contig8.19528.1|Name=mRNA_S-ischiensis_contig8.19528.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
ARFVVARGPFGGTKGRLSDMENEGSLVKLLACCAAAQCAETHVCSRRTQS
VGATPCPRCGGSGGGSEWALGFALSLCELFGCCVAQREEVLEIVTSRVVL
REKPGEKKEKDQHGQTHPPPPHQQHQHQLQETKPSHRQCTQQAAPGATTL
CPAPRPPGPGPRAPPGPDDGKLRQGLP
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mRNA from alignment at S-ischiensis_contig8:1953124..1956426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19528.1 ID=mRNA_S-ischiensis_contig8.19528.1|Name=mRNA_S-ischiensis_contig8.19528.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3303bp|location=Sequence derived from alignment at S-ischiensis_contig8:1953124..1956426- (Schizocladia ischiensis KU_0333)
GCCCGCTTCGTAGTGGCAAGGGGGCCCTTTGGGGGGACCAAGGGCAGGCT
GTCGGACATGGAGAATGAGGGATCCCTCGTCAAGCTTCTGGCGTGCTGTG
CGGCAGCCCAGTGCGCCGAAACTCACGTGTGCTCGCGCAGGTGACCACGT
GTTGATGTCATGGCTCCATGGCTTGGTTTCTCGTGTGTTTCCAACCCACG
TGAAAGCTGTGTAGACGAATGCTGGGCCTGGGGTTGATGATTAAGTTGTG
CCACGATCATATCCAGTGGGATTCCCCTGCAGTGCTGCTATGCCGATGGG
CATCCCCCGTTTCGGGTTTCAACATCGGGGTGGAGATGAACCAATTGCCT
CACACAGTCGTCGACACGACATGGCCAGAAAAGGGCCCCATTGGGGTTGT
ACGACTCGCCCTTCTTGTGATCAGGTGCCTTTTTCACCACCTCTGGCCGG
CTGTCATGCGGCAGAACTAGCAAGCATGTTGCAGCCAAGCATGTCGTACA
AGCAAGGGTGCCCCCCGGGGGGCCCGAGCCTTCCGACCGCAACATCTGAA
ATACTCTATTTATCGGAGGTTTATTGCAGTGTCGTAGAATCATTGCATGT
CAAACACGCGGTTTCGCTCTTGACACACGAATAATTCTCGGCCACTACTT
GTACCGGCATAGAGGGGCCTTGCTTTGGACATGATGTGTGTCATGTCACA
ACCCGCACGACCAATCGTTTGCATTGCAATACCCTTCCGACAAATGCGTA
ACCACCTCCCCCAGCTGGGATGCTTGCCACGCTATGAGGTCACCGGTCGG
TGTTCTTCAGGTCCAGGAGCATTTCAAACCCCTTGGGGGGCATTCAATGC
CGTCGTCTACAGTACAGTACATCACTACGAGTATGCAGCCAGCTATTGCA
CTCGTGCTCAGCAAGTCAGCCCCCCCCCCACCCCCACAACGATATTTTCA
TCGCCGAAACACTGCCGCGACGAAATGAATCACAGGATATTATTGTGGTA
GGGGCGCATCACGGTGCCCCCTAGCGGCTGAAGATATCAGCTTTTTGGCC
TCGGCCCGCATTTTGAGGTGTGCTTCCAAATAGCACTGCTTGCCAGCTTA
CTACTGTAGTATGCAGTGATGACAGCATTGAGCTGAGAGGCGCAGGGAAA
AGAAGAAACGACGGGGAAAAATTCAGGCCAATATTTCTTGTGTGTGTGTG
TGTGTGTGCATTTCTACTTAACAAACCTGGCCCTTGAAGAACACCTTCTG
CATGCGGTGAATGGTTTATGACTCTTATGTAGATGATAAAGATGCTTATA
AACAGTGCGCTCTACAGCAACGTTGGAGCATGGAAGGAAAGTCGGCGTCA
CTCATCGACAGCGTCCATCTGTCTACATCATCGATCAACACGCAGCCAAA
ATTCGATCAGCAGTCAGTTGGACCACCCCTCGCCCAAATTCTCATACTTA
GCACGCACCACCCGAGACTATCGATTGACGCCCATCTCAATTGAAAGATG
GATCGTCCATCACCGGTGTACAGGGGTTAAGCGATGATGAGTGTACTGTC
GTCCTCTATGGGTAAAACTGAACTTGACCCTCCACGCTGGGTGGGCTGGG
TGGGCCTCATCCCCTCCCCCCTTCCAGGACACAGAGCGTGGGCGCCACAC
CCTGCCCGCGGTGCGGCGGGTCGGGGGGGGGATCTGAGTGGGCGCTGGGC
TTTGCCCTCTCCCTGTGTGAGCTGTTTGGGTGCTGCGTGGCCCAAAGGGA
GGAGGTGCGCTTGTGATTCATATAAATTGTACTTCGAAGTACTTCGAAGT
AGCGAGGTACAATTGCACGTGTGTGAGATTGGCTGTTCTCGTATTGCAGT
AGTAGTTGTCCCATTTAGGAATTGAATGTTCTTATGCTACTGTAGTGATT
GTCACATCAAGGAGCTAAGAACAAGGAGGAGGTGCGCTTGGTTGGGCAAC
GCCTCCCTCCCCCCCGCTGGCCCCTGGAGGGGGGGGGGTTTCTTGTATAC
CTGGAAAACTTCACTTGCTTGATCGTTGAAAATTTGTCGCGTTCGAACCG
GAAGCTCTCCTGGGGTGGCGTGTGCTCCCCGCAATTCCAGGCGCAGGAGG
GGGGGGGAGAGAAGGAGGAGGAGGAGGAAGGGGGGTCTGGCCATTTCTTT
GCGGGGCTGCGCCGCTCATAACCCCATTGATGCCTTTTTTCCAAGTGCAT
CCTCTAGTGCTGTTGACGCTTTGTTATCCCCGAGGTGCCGCCCAAGTGCC
CCCGCCGTGCTCCTGCTTGTGTTTGCCGCACTGTACTTTGAAGTACCAAG
CACTTCCAGTACTGCGAGTACGCTATGTAGCACTACACGCTACAAGGATG
TACTCATTGGCTTGTCTTGCGACATACCCGTGCGTGCAATGCCAATACAC
TGTAATTTTTGTTTTTTGCGCAGCGCCACATTCACGCCTTTTGCGGTGCA
TGATCTTCCAGACTCTAGCCTTTGTTGAAACCCGCCGCCCCAGCCAGTTA
GTGTGGAGCACTCGGCGCTCTGCCGCCTTTGGGAGGGAGTGTTCACGCGC
GCACCAGCACCCCTTGCACAATTGTGGGGCGAAAGGGGGTTGCGCACAAC
AGGTGATTCTCATGTCATTTCCGCTTGAAACGCGCCCGCAGTCCTCGACC
CTTGGCAGCTACTAGTACATACAGCACGCAAGTTTCCATGCTTCCAACAC
GCGTCCATGGCACTTGCTTGCCCATCTCCGTGAAGTGTGCACGCCCGCCC
GCCCGCTCGCTGCCCCCCTCAGCAACCTCATGATTGCCGCCCCCCTGCCA
GTGATGGAATATCTAAGCAAATGATGGAATATCTAAGCAAATCAACCTAC
TTATCGACAATACTGATCTACTTCGTACTCTATATATTTATCAATAGTCG
GTGTTCGATAGTTTGACCCACACTATATCCAAGTATAGTACTACTGTAGT
AGTTAGTAGCGCCACCCACAAATCAGCCGAGCCCGTTATCTATCTACTGA
TCGATATTCCATCACTGCCCCCCCGGCCTGGCCTGCAGGTCTTGGAGATC
GTAACCTCCAGGGTGGTGCTGCGAGAGAAGCCGGGGGAGAAGAAGGAGAA
GGACCAGCACGGGCAGACACATCCACCACCGCCGCACCAGCAGCACCAGC
ACCAGCTGCAAGAGACGAAACCCAGCCATCGCCAGTGCACACAGCAGGCC
GCCCCTGGTGCAACAACCCTGTGCCCGGCCCCGCGCCCGCCGGGCCCGGG
CCCACGGGCTCCACCGGGCCCTGATGACGGGAAGCTGAGACAAGGCCTGC
CCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1953124..1956426-

>mRNA_S-ischiensis_contig8.19528.1 ID=mRNA_S-ischiensis_contig8.19528.1|Name=mRNA_S-ischiensis_contig8.19528.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1062bp|location=Sequence derived from alignment at S-ischiensis_contig8:1953124..1956426- (Schizocladia ischiensis KU_0333)
GCCCGCTTCGTAGTGGCAAGGGGGCCCTTTGGGGGGACCAAGGGCAGGCT
GTCGGACATGGAGAATGAGGGATCCCTCGTCAAGCTTCTGGCGTGCTGTG
CGGCAGCCCAGTGCGCCGAAACTCACGTGTGCTCGCGCAGGCCCGCTTCG
TAGTGGCAAGGGGGCCCTTTGGGGGGACCAAGGGCAGGCTGTCGGACATG
GAGAATGAGGGATCCCTCGTCAAGCTTCTGGCGTGCTGTGCGGCAGCCCA
GTGCGCCGAAACTCACGTGTGCTCGCGCAGGACACAGAGCGTGGGCGCCA
CACCCTGCCCGCGGTGCGGCGGGTCGGGGGGGGGATCTGAGTGGGCGCTG
GGCTTTGCCCTCTCCCTGTGTGAGCTGTTTGGGTGCTGCGTGGCCCAAAG
GGAGGAGGACACAGAGCGTGGGCGCCACACCCTGCCCGCGGTGCGGCGGG
TCGGGGGGGGGATCTGAGTGGGCGCTGGGCTTTGCCCTCTCCCTGTGTGA
GCTGTTTGGGTGCTGCGTGGCCCAAAGGGAGGAGGTCTTGGAGATCGTAA
CCTCCAGGGTGGTGCTGCGAGAGAAGCCGGGGGAGAAGAAGGAGAAGGAC
CAGCACGGGCAGACACATCCACCACCGCCGCACCAGCAGCACCAGCACCA
GCTGCAAGAGACGAAACCCAGCCATCGCCAGTGCACACAGCAGGCCGCCC
CTGGTGCAACAACCCTGTGCCCGGCCCCGCGCCCGCCGGGCCCGGGCCCA
CGGGCTCCACCGGGCCCTGATGACGGGAAGCTGAGACAAGGCCTGCCCGT
CTTGGAGATCGTAACCTCCAGGGTGGTGCTGCGAGAGAAGCCGGGGGAGA
AGAAGGAGAAGGACCAGCACGGGCAGACACATCCACCACCGCCGCACCAG
CAGCACCAGCACCAGCTGCAAGAGACGAAACCCAGCCATCGCCAGTGCAC
ACAGCAGGCCGCCCCTGGTGCAACAACCCTGTGCCCGGCCCCGCGCCCGC
CGGGCCCGGGCCCACGGGCTCCACCGGGCCCTGATGACGGGAAGCTGAGA
CAAGGCCTGCCC
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