mRNA_S-ischiensis_contig8.19522.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19522.1
Unique NamemRNA_S-ischiensis_contig8.19522.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1921350..1922729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1382
Cds size882
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.1936312-UTR-S-ischiensis_contig8:1921349..19218471622817267.1936312-UTR-S-ischiensis_contig8:1921349..1921847Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1921350..1921847 +
1695740981.3396177-UTR-S-ischiensis_contig8:1921349..19218471695740981.3396177-UTR-S-ischiensis_contig8:1921349..1921847Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1921350..1921847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.2055426-CDS-S-ischiensis_contig8:1921847..19227291622817267.2055426-CDS-S-ischiensis_contig8:1921847..1922729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1921848..1922729 +
1695740981.3561974-CDS-S-ischiensis_contig8:1921847..19227291695740981.3561974-CDS-S-ischiensis_contig8:1921847..1922729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1921848..1922729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19522.1prot_S-ischiensis_contig8.19522.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1921848..1922729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19522.1

>prot_S-ischiensis_contig8.19522.1 ID=prot_S-ischiensis_contig8.19522.1|Name=mRNA_S-ischiensis_contig8.19522.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=294bp
MRRCCPGTRPRGGPPASTLVSAGRWCLGRCFMASSSAQRAFVCLANGSWA
CPRPSSPPLGPVQATVITTTTVAAAATAAAAAAVATTPATTGDGEHVVLT
ARPNTAHATTTPRGGAGRIQKGVGGAAWSPHRHRRHRRRGRAHTSYRSRS
GGGGRGGGGGRRDSSSSTSRRRGSGGLGGGGGNRSNGGAITGGCSSRTCA
SRGRRIRHLVQGEHPPHPPRPPHQQPLPPPPPGAQIRAHRTRARRWQRRR
RRPHRALPVRRRRRQRRAPQGQAHQRPQRAPRLADAGTRPTAGG
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mRNA from alignment at S-ischiensis_contig8:1921350..1922729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19522.1 ID=mRNA_S-ischiensis_contig8.19522.1|Name=mRNA_S-ischiensis_contig8.19522.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1380bp|location=Sequence derived from alignment at S-ischiensis_contig8:1921350..1922729+ (Schizocladia ischiensis KU_0333)
CAAGGTGCCCATCGGTGCATCGGGTCGCAGCGCGGGGACCCCGCGGGGGG
GTGCGCCGGCGCCTTGAGCCATGCCCCTGCCTGAGCCTCTCGCAGCGCTC
GCAGCCCCACGAGCGGGGCAGCCGCGGCCGCCGCCGCCGCCGCTGACGGC
ATCGCCGCCGATTTCGCCCCCGAGTCCCCCGGCCTGGAGCGATGGTTCCC
GCGCCCTCTGCTGCTCGCTCTGCCGGTCGGAACCCCGCCCTCGGCCGCGT
GCGTCTCCCGCCGCTGCACCCGCGCCGGGCGCCTCGCCTCGCTCAGGCTG
CCGCACTGCCCCCAGGGGGCGGGGTGGCGCCTGGGGCGGGAACAGGGCCG
GAGACTGGGCCTGGGGCTGGACGGGCGGGCTCGCCGGCTGCTGCTGCCCC
CACTGCTGTGGCGGCGGCGGCGAGGGCACGGGGGCAGTGGGGCGGGCTGG
GGTGCTCGGGATCTCCTTCTTGTCATCAGCCGGTCCTCCAGCAGAGATAT
GCGCCGCTGTTGCCCCGGCACGAGGCCCAGGGGCGGGCCCCCGGCGAGCA
CGCTTGTGAGCGCCGGCCGATGGTGTCTCGGGAGGTGTTTCATGGCGAGC
AGCAGCGCTCAGCGTGCCTTCGTCTGCCTCGCCAATGGCTCCTGGGCTTG
CCCACGGCCAAGCAGCCCCCCCCTTGGCCCTGTGCAAGCCACCGTCATCA
CCACCACCACAGTTGCTGCTGCTGCTACTGCTGCCGCCGCCGCTGCCGTC
GCCACTACTCCAGCGACCACGGGCGATGGTGAACACGTTGTGCTCACCGC
CCGACCCAACACTGCTCATGCAACCACCACCCCCCGAGGCGGGGCAGGGA
GAATCCAGAAAGGCGTAGGCGGGGCTGCTTGGTCTCCTCACCGTCACCGC
CGCCACCGCCGCCGGGGGCGTGCCCATACCAGCTATCGCAGCAGGAGTGG
CGGCGGTGGCCGTGGTGGCGGCGGTGGCCGTCGTGACAGCAGTAGCAGCA
CCAGCCGCCGCCGCGGTAGCGGCGGCCTTGGCGGCGGCGGCGGCAACCGC
AGCAATGGGGGCGCCATCACCGGAGGTTGCAGCAGCCGCACTTGCGCCAG
TAGAGGCCGCCGAATCCGCCACCTGGTCCAGGGGGAGCACCCGCCCCACC
CGCCGCGACCGCCGCACCAGCAACCGCTGCCACCGCCGCCGCCGGGCGCT
CAGATTCGGGCCCACCGAACCCGTGCCCGGCGGTGGCAGCGCCGCCGGCG
GCGTCCACACCGCGCCCTGCCGGTCCGGCGACGGAGACGGCAGCGCCGGG
CCCCACAGGGGCAGGCGCACCAGCGGCCGCAGCGGGCACCACGGCTCGCC
GACGCGGGGACCCGCCCCACGGCCGGGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1921350..1922729+

>mRNA_S-ischiensis_contig8.19522.1 ID=mRNA_S-ischiensis_contig8.19522.1|Name=mRNA_S-ischiensis_contig8.19522.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1764bp|location=Sequence derived from alignment at S-ischiensis_contig8:1921350..1922729+ (Schizocladia ischiensis KU_0333)
ATGCGCCGCTGTTGCCCCGGCACGAGGCCCAGGGGCGGGCCCCCGGCGAG
CACGCTTGTGAGCGCCGGCCGATGGTGTCTCGGGAGGTGTTTCATGGCGA
GCAGCAGCGCTCAGCGTGCCTTCGTCTGCCTCGCCAATGGCTCCTGGGCT
TGCCCACGGCCAAGCAGCCCCCCCCTTGGCCCTGTGCAAGCCACCGTCAT
CACCACCACCACAGTTGCTGCTGCTGCTACTGCTGCCGCCGCCGCTGCCG
TCGCCACTACTCCAGCGACCACGGGCGATGGTGAACACGTTGTGCTCACC
GCCCGACCCAACACTGCTCATGCAACCACCACCCCCCGAGGCGGGGCAGG
GAGAATCCAGAAAGGCGTAGGCGGGGCTGCTTGGTCTCCTCACCGTCACC
GCCGCCACCGCCGCCGGGGGCGTGCCCATACCAGCTATCGCAGCAGGAGT
GGCGGCGGTGGCCGTGGTGGCGGCGGTGGCCGTCGTGACAGCAGTAGCAG
CACCAGCCGCCGCCGCGGTAGCGGCGGCCTTGGCGGCGGCGGCGGCAACC
GCAGCAATGGGGGCGCCATCACCGGAGGTTGCAGCAGCCGCACTTGCGCC
AGTAGAGGCCGCCGAATCCGCCACCTGGTCCAGGGGGAGCACCCGCCCCA
CCCGCCGCGACCGCCGCACCAGCAACCGCTGCCACCGCCGCCGCCGGGCG
CTCAGATTCGGGCCCACCGAACCCGTGCCCGGCGGTGGCAGCGCCGCCGG
CGGCGTCCACACCGCGCCCTGCCGGTCCGGCGACGGAGACGGCAGCGCCG
GGCCCCACAGGGGCAGGCGCACCAGCGGCCGCAGCGGGCACCACGGCTCG
CCGACGCGGGGACCCGCCCCACGGCCGGGGGAATGCGCCGCTGTTGCCCC
GGCACGAGGCCCAGGGGCGGGCCCCCGGCGAGCACGCTTGTGAGCGCCGG
CCGATGGTGTCTCGGGAGGTGTTTCATGGCGAGCAGCAGCGCTCAGCGTG
CCTTCGTCTGCCTCGCCAATGGCTCCTGGGCTTGCCCACGGCCAAGCAGC
CCCCCCCTTGGCCCTGTGCAAGCCACCGTCATCACCACCACCACAGTTGC
TGCTGCTGCTACTGCTGCCGCCGCCGCTGCCGTCGCCACTACTCCAGCGA
CCACGGGCGATGGTGAACACGTTGTGCTCACCGCCCGACCCAACACTGCT
CATGCAACCACCACCCCCCGAGGCGGGGCAGGGAGAATCCAGAAAGGCGT
AGGCGGGGCTGCTTGGTCTCCTCACCGTCACCGCCGCCACCGCCGCCGGG
GGCGTGCCCATACCAGCTATCGCAGCAGGAGTGGCGGCGGTGGCCGTGGT
GGCGGCGGTGGCCGTCGTGACAGCAGTAGCAGCACCAGCCGCCGCCGCGG
TAGCGGCGGCCTTGGCGGCGGCGGCGGCAACCGCAGCAATGGGGGCGCCA
TCACCGGAGGTTGCAGCAGCCGCACTTGCGCCAGTAGAGGCCGCCGAATC
CGCCACCTGGTCCAGGGGGAGCACCCGCCCCACCCGCCGCGACCGCCGCA
CCAGCAACCGCTGCCACCGCCGCCGCCGGGCGCTCAGATTCGGGCCCACC
GAACCCGTGCCCGGCGGTGGCAGCGCCGCCGGCGGCGTCCACACCGCGCC
CTGCCGGTCCGGCGACGGAGACGGCAGCGCCGGGCCCCACAGGGGCAGGC
GCACCAGCGGCCGCAGCGGGCACCACGGCTCGCCGACGCGGGGACCCGCC
CCACGGCCGGGGGA
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