mRNA_S-ischiensis_contig8.19504.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19504.1
Unique NamemRNA_S-ischiensis_contig8.19504.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.600e-26
Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRLE 252
            WAD RVRKGVEL RKG  Q A+  Y QALGMCPDH D LVARGAA A  GRLR AV DL RAL V+P + NA  YL ETR+R+E
Sbjct:  281 WADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRME 364
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A2P6VJP1_9CHLO (Tetratricopeptide repeat 14-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJP1_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 3.040e-13
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRLELAGADVLER 279
            W+ + +R+GV L ++GD + A+  YDQAL +   ++DALVARGAA AN  + + A  DLE ALE+ P+ +NARQYL   + +    G  +L R
Sbjct:   43 WSKEALRRGVALAKQGDLKAALPCYDQALQLDGSNADALVARGAALANKRQWQRASNDLEAALELQPEHSNARQYLDAVKAKATEGGVRLLPR 135
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A2V0NV44_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NV44_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 2.050e-12
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRLELA 258
            W+ + VR+GV   R G+ + A   Y +AL + P ++ ALVARGAA ANA R   AVAD E AL   P+  NAR+YL  TR  +E A
Sbjct:  151 WSQEAVRRGVVHARAGEAEAAAECYAKALQLDPRNAHALVARGAASANARRFADAVADFEAALAACPEDANARRYLEATRAHVEAA 236
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A7S2UZZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZZ2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.050e-12
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   46 GDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRL 249
            GD   A+  YD+ALG+CPDH  ALVARGAA AN G L  A+ D ++AL   PD  NA+ Y   TR +L
Sbjct:    1 GDDARALKYYDEALGLCPDHVAALVARGAARANNGLLEKALVDFDQALRNAPDDANAKSYADATRAKL 68
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A2C6L0E0_9APIC (Tetratricopeptide repeat-containing protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L0E0_9APIC)

HSP 1 Score: 71.2 bits (173), Expect = 6.210e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRLE 252
            WA QR+ +GV   RKGD + A+  Y+ AL + P ++DALVARGAAHAN      A+ DL  AL+ +P   NA +YL    QR++
Sbjct: 1674 WAQQRLHQGVGAARKGDLKTAMECYESALLLKPQYTDALVARGAAHANKLEYEKALEDLNAALDQEPQHPNALKYLRIVIQRMQ 1757
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: F0VG82_NEOCL (Putative TPR Domain containing protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VG82_NEOCL)

HSP 1 Score: 68.6 bits (166), Expect = 5.410e-11
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMETRQRLE 252
            WA QR+++GV   RKGD   A+  Y+ AL + P ++DALVARGAAHAN      A+ DL+ AL  +P   NA +Y     QR+E
Sbjct: 1254 WAQQRLQQGVSAARKGDLNTAMECYEAALLLKPKYADALVARGAAHANRLAYEKALDDLDAALGQEPQHPNAIKYRRIVLQRME 1337
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A7S1TV26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV26_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.790e-11
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYL 228
            WA ++V  GV   R GD   A+  YD AL + P+H DALV RGAA AN      AVADLE ALE DP+   AR+YL
Sbjct:  170 WAAEQVSMGVVHARAGDLDEAMKHYDYALSIYPNHVDALVGRGAAKANLRDHAGAVADLEAALEKDPNCAAARRYL 245
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: E1ZRZ9_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZRZ9_CHLVA)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-10
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    1 WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHAN------------AGRLRHAVADLERALEVDPDSTNARQYLMETRQRLELAGADVL 273
            W+ + +R+GV L + GD Q A+  Y QAL + P  +DALVARGAAHAN            AGR      DLE AL++ P   NA +YL   + +   +G  +L
Sbjct:  188 WSGEALRRGVALAKCGDLQAALPCYGQALDLDPGSADALVARGAAHANLEQWQLASGGLEAGRWWEGWDDLEAALQLQPQHPNAAEYLAAVQAKARASGTRLL 290
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A0B1RQ18_OESDE (Tetratricopeptide repeat protein n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1RQ18_OESDE)

HSP 1 Score: 60.5 bits (145), Expect = 1.190e-9
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    4 ADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMET 237
            AD+ V +GVE +R G+ + A++  +QAL + P   +ALVARGAA++   +   A AD ++AL + P  +NAR Y++ET
Sbjct:    3 ADEYVVRGVEQMRSGNRESAIVTLNQALEIYPHCVEALVARGAAYSTNAQYTLAEADFDQALALAPTHSNARNYMVET 80
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BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Match: A0A0D8XUI2_DICVI (Tetratricopeptide repeat protein n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XUI2_DICVI)

HSP 1 Score: 64.3 bits (155), Expect = 1.420e-9
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    4 ADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAGRLRHAVADLERALEVDPDSTNARQYLMET 237
            AD+ V +GVE ++ G+ + A+++ +QAL + P+  +ALVARGAA++  G+   A AD ++AL + P  TNAR YL+ET
Sbjct:  213 ADEFVVRGVEQMKSGNRESAIVVLNQALEINPECVEALVARGAAYSTNGQYVLAEADFDQALSLVPTHTNARNYLVET 290
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK49_ECTSI2.600e-2667.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P6VJP1_9CHLO3.040e-1344.09Tetratricopeptide repeat 14-like n=1 Tax=Micractin... [more]
A0A2V0NV44_9CHLO2.050e-1247.67Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A7S2UZZ2_9STRA3.050e-1252.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2C6L0E0_9APIC6.210e-1246.43Tetratricopeptide repeat-containing protein n=1 Ta... [more]
F0VG82_NEOCL5.410e-1146.43Putative TPR Domain containing protein n=2 Tax=Neo... [more]
A0A7S1TV26_9STRA8.790e-1152.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
E1ZRZ9_CHLVA1.720e-1039.81Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A0B1RQ18_OESDE1.190e-942.31Tetratricopeptide repeat protein n=1 Tax=Oesophago... [more]
A0A0D8XUI2_DICVI1.420e-944.87Tetratricopeptide repeat protein n=1 Tax=Dictyocau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1843738..1846489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue6.4e-23
Seed eggNOG ortholog2880.D7FK49
Preferred nameTTC14
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.TPR repeat
EggNOG OGs28H66@1,2QPJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005830.1
Exons2
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817285.3177493-CDS-S-ischiensis_contig8:1843737..18437941622817285.3177493-CDS-S-ischiensis_contig8:1843737..1843794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1843738..1843794 +
1695740995.8997967-CDS-S-ischiensis_contig8:1843737..18437941695740995.8997967-CDS-S-ischiensis_contig8:1843737..1843794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1843738..1843794 +
1622817285.3320146-CDS-S-ischiensis_contig8:1846179..18464881622817285.3320146-CDS-S-ischiensis_contig8:1846179..1846488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1846180..1846488 +
1695740995.9120145-CDS-S-ischiensis_contig8:1846179..18464881695740995.9120145-CDS-S-ischiensis_contig8:1846179..1846488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1846180..1846488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19504.1prot_S-ischiensis_contig8.19504.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1843738..1846488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19504.1

>prot_S-ischiensis_contig8.19504.1 ID=prot_S-ischiensis_contig8.19504.1|Name=mRNA_S-ischiensis_contig8.19504.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
WADQRVRKGVELVRKGDPQGAVIMYDQALGMCPDHSDALVARGAAHANAG
RLRHAVADLERALEVDPDSTNARQYLMETRQRLELAGADVLERLLPSPPG
PRGGAAINRMGGAGGAGGGGAA
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mRNA from alignment at S-ischiensis_contig8:1843738..1846489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19504.1 ID=mRNA_S-ischiensis_contig8.19504.1|Name=mRNA_S-ischiensis_contig8.19504.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2752bp|location=Sequence derived from alignment at S-ischiensis_contig8:1843738..1846489+ (Schizocladia ischiensis KU_0333)
TGGGCGGACCAGAGGGTTCGGAAGGGGGTGGAGCTGGTGCGCAAGGGGGA
CCCCCAGGTGAGAGAGTGTTATACTTGCGACTTCTGAAGTACTGCACAAG
CAGCGTGTACAAGTATGTACTAGTACCTCCCCGCCCTTCTGGCAGACCTA
TGCTAGCCTTGGCTAATCGAAAGACCACTGCTGTACTTGGCCAAGTGATG
GTCTCTTTAGCTGTGGCAGCACTATGTGAGTACTATACACGCTTTTGCAG
GTGTGAGTGTGCTCCGCACTGCTTGCCAAGGAATCGCGCCAGGAGTTTAC
TGAGGTGATGGAGGAAGCCCTGCAGCGAAAGGAGCGGGATACAGTGCTAG
CTGAAGAGGCACGTATCACTACATGGTCGGATGATACCGCCGCCCCGGGA
GCTGGGTCTCATCAAACCATATCTGCTAGGGAAGCCCGACTACAGAACCC
GTCTCATGTTTCTGTTTAGGTCGGAAACCATACCGGTGAGGGCAGGCAGG
TCAGTGGGGGTTTCGCGGGAGGCCGGGGATCAGACCACTAGGTGCGCGGA
TTGTCCATCAGACGATGAGACAGTTAGCGACGTCATGCTGGAGTGCCCCC
AACACGATGCCACCAGAGTGGCCCCACACGCAGAGCTCAAAGCCGCCCTC
CCGAAAAATATTTACAAACGTTCTAGGGACTCTACCCTCGCCATCAGGTC
ATCACCCTCCTGGATCCATCAGGTGAGACGTCTGGTTGGCCAGCGGAGGA
GCAGAGTCGTGTAGAGCGTGCTGTGAAAGCTTTTCTTGTGTCGGTGTGGA
GTGCCCGGTTGGAGCGAGTAGGTACCATAGATGGTTATCTTGGATCTCCC
CCCGCCGTGTCCCGGCACGGCGAGGGAACCCCCTCTCCCGCTAGGCCTAG
GTCTAGCAGGGGAGGGGCCCCCCAACCCGGACTCTCACGAGTCCGGGATG
GGGGGGGTATGGACCCCCTCCCACCCTGGCTCTGCCAGGGGAGGGAGGGG
ACCTGCTCCATCTCGAACGAGGCGCGGGGTCAATGGTCTCGGGACTACGG
CAAGCACCACGTGAGTACATATATATTGCTGTGAGGCTCGGGGTCAACGG
TCTCGGGACTACGGCGAGCACAGCATGGGTACTGAGAGACAACACACACA
CATGTAGAGCTATATATATTGCTGTACGAGGACAGTATAACAACTTGGGC
GGTCCTGGGGGGCCGAAGGGGGGGGGGGGGCAGGCTGGGGGGCGGGGGGG
GCGGAGGGCGGGGCCAGACCGGAGGAGACAGTCAAGGCACGAGGAAGGGA
GTGACCAAGGCCAGCGGGGTTCAGTAGTGCAGGCTGGGAGACCAGGGGGA
GAGCATGGGATGGGAGGACAAGTAGAGTGGGGGGTACTGCTTGCACCCCA
AGTGGGGGTGCGCCCCATCGTCCCTTCACCTGTCAGACCTCTGACGGCTG
TTTCGTCCAGAAGTGCTGTGCGGTGGGCACGCTCATGTATCCTCCCTTGG
CCTCTTACAATAGCGCGCTTTTCTACAGTCTGTTTCGCACGGTCTATGTC
TTCTCTCTTCGCACGGGCCTGCAGTTGGCACGCTTGTCTACTTACCGTAA
ACGTGCAGTGGGGGCAAGTGGGTGTGTGCGCTGTGTGTGATTGCGCCGGC
GTTTGAGGAACAAGTGTGGGGCTGCTCTCCCTGCAGGAAAGTAGCTGCTT
GTACTGCGCATGTACAGTCCTGTGTGGTGCTTAATTGCTAGCATACTTGG
AGTGGTGAACCTGAACAGTACGAGTGTGTGCCTGCTGCTGTGCTGTTGGA
GAAAAGCCAAACGAGGTGCGGCTAAAGTCACTAGTGACCTCACCTGCTGT
CGACGGTCGCACCTGTGCCGGCAAATAGGCCGGCATTAGTACTACTAGTA
GTAGTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGCAGTAGTACG
AGTAGCAGCAGCAGCAGTAGTAGGACAGTGGTTGCAGTGGCCGCAGTATG
CGCTACTGCGCTACTTTGAAATACTGCTACTGTGGTATTGCACTTGGACG
TACTTTGGAAGCGTGTAGGCACTTCGTTCGAAGTCGTAGGCACTGTCCGA
TGTACTGTAATGCAGAGTGTATAATGGGCCGATGGTAGGTGGTGTGCATA
GGACATGGGGTAACCCTGTCCGACATGGATACATATGAAGTAGTACTCGA
GTACTTGTACTGTACTGTAGCAACGCACCGTGGGACTATGGACAGTATTT
CTGCCTTACCGACTACTAGCCGTACGGTAAATGCTCAGCAGTCGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACGGCGGCAGCCGCTGCG
ATCGTTCGCCAAGCCGACACCCCCCGCCCCTGCCCCTGGCGCTTGTTTAT
GACCAACGACGCCGACCAAAAACCGCTCCTCCACGAATACAGGGGGCGGT
CATAATGTATGACCAGGCGCTTGGCATGTGCCCGGACCACTCCGATGCCC
TGGTGGCCCGCGGTGCCGCGCACGCCAACGCAGGCCGCCTCCGCCATGCC
GTCGCGGACCTGGAGCGGGCCCTGGAAGTGGACCCGGACAGCACCAACGC
CCGCCAATACCTCATGGAAACCCGGCAGAGGCTGGAGCTGGCTGGGGCCG
ACGTGCTCGAGCGCTTGCTCCCAAGCCCCCCCGGGCCGCGTGGTGGCGCG
GCGATAAATAGAATGGGAGGTGCAGGAGGAGCAGGAGGCGGCGGAGCGGC
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1843738..1846489+

>mRNA_S-ischiensis_contig8.19504.1 ID=mRNA_S-ischiensis_contig8.19504.1|Name=mRNA_S-ischiensis_contig8.19504.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig8:1843738..1846489+ (Schizocladia ischiensis KU_0333)
TGGGCGGACCAGAGGGTTCGGAAGGGGGTGGAGCTGGTGCGCAAGGGGGA
CCCCCAGTGGGCGGACCAGAGGGTTCGGAAGGGGGTGGAGCTGGTGCGCA
AGGGGGACCCCCAGGGGGCGGTCATAATGTATGACCAGGCGCTTGGCATG
TGCCCGGACCACTCCGATGCCCTGGTGGCCCGCGGTGCCGCGCACGCCAA
CGCAGGCCGCCTCCGCCATGCCGTCGCGGACCTGGAGCGGGCCCTGGAAG
TGGACCCGGACAGCACCAACGCCCGCCAATACCTCATGGAAACCCGGCAG
AGGCTGGAGCTGGCTGGGGCCGACGTGCTCGAGCGCTTGCTCCCAAGCCC
CCCCGGGCCGCGTGGTGGCGCGGCGATAAATAGAATGGGAGGTGCAGGAG
GAGCAGGAGGCGGCGGAGCGGCGGGGGCGGTCATAATGTATGACCAGGCG
CTTGGCATGTGCCCGGACCACTCCGATGCCCTGGTGGCCCGCGGTGCCGC
GCACGCCAACGCAGGCCGCCTCCGCCATGCCGTCGCGGACCTGGAGCGGG
CCCTGGAAGTGGACCCGGACAGCACCAACGCCCGCCAATACCTCATGGAA
ACCCGGCAGAGGCTGGAGCTGGCTGGGGCCGACGTGCTCGAGCGCTTGCT
CCCAAGCCCCCCCGGGCCGCGTGGTGGCGCGGCGATAAATAGAATGGGAG
GTGCAGGAGGAGCAGGAGGCGGCGGAGCGGCG
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