mRNA_S-ischiensis_contig8.19503.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19503.1
Unique NamemRNA_S-ischiensis_contig8.19503.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1843736..1844503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19503.1prot_S-ischiensis_contig8.19503.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1844118..1844501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.0409553-UTR-S-ischiensis_contig8:1843735..18441171622817267.0409553-UTR-S-ischiensis_contig8:1843735..1844117Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1843736..1844117 +
1695740981.2596986-UTR-S-ischiensis_contig8:1843735..18441171695740981.2596986-UTR-S-ischiensis_contig8:1843735..1844117Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1843736..1844117 +
1622817267.0694258-UTR-S-ischiensis_contig8:1844501..18445031622817267.0694258-UTR-S-ischiensis_contig8:1844501..1844503Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1844502..1844503 +
1695740981.2802749-UTR-S-ischiensis_contig8:1844501..18445031695740981.2802749-UTR-S-ischiensis_contig8:1844501..1844503Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1844502..1844503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.0555007-CDS-S-ischiensis_contig8:1844117..18445011622817267.0555007-CDS-S-ischiensis_contig8:1844117..1844501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1844118..1844501 +
1695740981.270363-CDS-S-ischiensis_contig8:1844117..18445011695740981.270363-CDS-S-ischiensis_contig8:1844117..1844501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1844118..1844501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19503.1

>prot_S-ischiensis_contig8.19503.1 ID=prot_S-ischiensis_contig8.19503.1|Name=mRNA_S-ischiensis_contig8.19503.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MIPPPRELGLIKPYLLGKPDYRTRLMFLFRSETIPVRAGRSVGVSREAGD
QTTRCADCPSDDETVSDVMLECPQHDATRVAPHAELKAALPKNIYKRSRD
STLAIRSSPSWIHQVRRLVGQRRSRVV*
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mRNA from alignment at S-ischiensis_contig8:1843736..1844503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19503.1 ID=mRNA_S-ischiensis_contig8.19503.1|Name=mRNA_S-ischiensis_contig8.19503.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig8:1843736..1844503+ (Schizocladia ischiensis KU_0333)
TGTGGGCGGACCAGAGGGTTCGGAAGGGGGTGGAGCTGGTGCGCAAGGGG
GACCCCCAGGTGAGAGAGTGTTATACTTGCGACTTCTGAAGTACTGCACA
AGCAGCGTGTACAAGTATGTACTAGTACCTCCCCGCCCTTCTGGCAGACC
TATGCTAGCCTTGGCTAATCGAAAGACCACTGCTGTACTTGGCCAAGTGA
TGGTCTCTTTAGCTGTGGCAGCACTATGTGAGTACTATACACGCTTTTGC
AGGTGTGAGTGTGCTCCGCACTGCTTGCCAAGGAATCGCGCCAGGAGTTT
ACTGAGGTGATGGAGGAAGCCCTGCAGCGAAAGGAGCGGGATACAGTGCT
AGCTGAAGAGGCACGTATCACTACATGGTCGGATGATACCGCCGCCCCGG
GAGCTGGGTCTCATCAAACCATATCTGCTAGGGAAGCCCGACTACAGAAC
CCGTCTCATGTTTCTGTTTAGGTCGGAAACCATACCGGTGAGGGCAGGCA
GGTCAGTGGGGGTTTCGCGGGAGGCCGGGGATCAGACCACTAGGTGCGCG
GATTGTCCATCAGACGATGAGACAGTTAGCGACGTCATGCTGGAGTGCCC
CCAACACGATGCCACCAGAGTGGCCCCACACGCAGAGCTCAAAGCCGCCC
TCCCGAAAAATATTTACAAACGTTCTAGGGACTCTACCCTCGCCATCAGG
TCATCACCCTCCTGGATCCATCAGGTGAGACGTCTGGTTGGCCAGCGGAG
GAGCAGAGTCGTGTAGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1843736..1844503+

>mRNA_S-ischiensis_contig8.19503.1 ID=mRNA_S-ischiensis_contig8.19503.1|Name=mRNA_S-ischiensis_contig8.19503.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig8:1843736..1844503+ (Schizocladia ischiensis KU_0333)
ATGATACCGCCGCCCCGGGAGCTGGGTCTCATCAAACCATATCTGCTAGG
GAAGCCCGACTACAGAACCCGTCTCATGTTTCTGTTTAGGTCGGAAACCA
TACCGGTGAGGGCAGGCAGGTCAGTGGGGGTTTCGCGGGAGGCCGGGGAT
CAGACCACTAGGTGCGCGGATTGTCCATCAGACGATGAGACAGTTAGCGA
CGTCATGCTGGAGTGCCCCCAACACGATGCCACCAGAGTGGCCCCACACG
CAGAGCTCAAAGCCGCCCTCCCGAAAAATATTTACAAACGTTCTAGGGAC
TCTACCCTCGCCATCAGGTCATCACCCTCCTGGATCCATCAGGTGAGACG
TCTGGTTGGCCAGCGGAGGAGCAGAGTCGTGTAGATGATACCGCCGCCCC
GGGAGCTGGGTCTCATCAAACCATATCTGCTAGGGAAGCCCGACTACAGA
ACCCGTCTCATGTTTCTGTTTAGGTCGGAAACCATACCGGTGAGGGCAGG
CAGGTCAGTGGGGGTTTCGCGGGAGGCCGGGGATCAGACCACTAGGTGCG
CGGATTGTCCATCAGACGATGAGACAGTTAGCGACGTCATGCTGGAGTGC
CCCCAACACGATGCCACCAGAGTGGCCCCACACGCAGAGCTCAAAGCCGC
CCTCCCGAAAAATATTTACAAACGTTCTAGGGACTCTACCCTCGCCATCA
GGTCATCACCCTCCTGGATCCATCAGGTGAGACGTCTGGTTGGCCAGCGG
AGGAGCAGAGTCGTGTAG
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