mRNA_S-ischiensis_contig8.19493.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19493.1
Unique NamemRNA_S-ischiensis_contig8.19493.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1789568..1790088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size523
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.918012-CDS-S-ischiensis_contig8:1789567..17899091622817266.918012-CDS-S-ischiensis_contig8:1789567..1789909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1789568..1789909 +
1695740981.1778808-CDS-S-ischiensis_contig8:1789567..17899091695740981.1778808-CDS-S-ischiensis_contig8:1789567..1789909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1789568..1789909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.931527-UTR-S-ischiensis_contig8:1789909..17900881622817266.931527-UTR-S-ischiensis_contig8:1789909..1790088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1789910..1790088 +
1695740981.1895123-UTR-S-ischiensis_contig8:1789909..17900881695740981.1895123-UTR-S-ischiensis_contig8:1789909..1790088Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1789910..1790088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19493.1prot_S-ischiensis_contig8.19493.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1789568..1789909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19493.1

>prot_S-ischiensis_contig8.19493.1 ID=prot_S-ischiensis_contig8.19493.1|Name=mRNA_S-ischiensis_contig8.19493.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
RQNSHRDHYHILTPGLARENPAYAVLAVRTSGLAPPHSESNITVAPPAAR
TRECPPCRVGGLPLPSVPSRAPGRISSPHNPRYAYAIPCTARTCSSPAAS
RPRPGPAPADNVA*
back to top

mRNA from alignment at S-ischiensis_contig8:1789568..1790088+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19493.1 ID=mRNA_S-ischiensis_contig8.19493.1|Name=mRNA_S-ischiensis_contig8.19493.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=521bp|location=Sequence derived from alignment at S-ischiensis_contig8:1789568..1790088+ (Schizocladia ischiensis KU_0333)
AGGCAGAATTCGCACCGTGACCATTACCACATCTTAACCCCAGGTCTCGC
AAGGGAAAACCCCGCATATGCTGTACTCGCCGTCAGAACCTCGGGGCTTG
CGCCTCCTCACTCAGAGTCCAACATCACCGTGGCGCCACCCGCAGCCCGC
ACACGGGAGTGCCCCCCTTGCCGAGTCGGAGGGTTGCCCCTCCCCTCCGT
ACCCTCCCGGGCCCCTGGCCGCATCTCGAGCCCACACAATCCAAGATATG
CGTATGCCATTCCTTGCACGGCGCGCACGTGCAGTTCGCCCGCCGCCTCT
CGGCCGCGACCGGGCCCAGCCCCAGCAGACAATGTAGCCTGACTCGGAGC
CCAATTGCGAGACGCGGTCGCCACCCGGCCATCTCTGCTTCGTACTCGGA
AACTTGTAGCTACTCCATAGCACTAAGCACCACATTGTCGACCAGGCCAG
GCCGTGTGCGGCGCGCCAACCCCGTGGCACATAGCGCGCTTGGCATTAGG
CTCTCCTGGGCTGACATGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1789568..1790088+

>mRNA_S-ischiensis_contig8.19493.1 ID=mRNA_S-ischiensis_contig8.19493.1|Name=mRNA_S-ischiensis_contig8.19493.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig8:1789568..1790088+ (Schizocladia ischiensis KU_0333)
AGGCAGAATTCGCACCGTGACCATTACCACATCTTAACCCCAGGTCTCGC
AAGGGAAAACCCCGCATATGCTGTACTCGCCGTCAGAACCTCGGGGCTTG
CGCCTCCTCACTCAGAGTCCAACATCACCGTGGCGCCACCCGCAGCCCGC
ACACGGGAGTGCCCCCCTTGCCGAGTCGGAGGGTTGCCCCTCCCCTCCGT
ACCCTCCCGGGCCCCTGGCCGCATCTCGAGCCCACACAATCCAAGATATG
CGTATGCCATTCCTTGCACGGCGCGCACGTGCAGTTCGCCCGCCGCCTCT
CGGCCGCGACCGGGCCCAGCCCCAGCAGACAATGTAGCCTGAAGGCAGAA
TTCGCACCGTGACCATTACCACATCTTAACCCCAGGTCTCGCAAGGGAAA
ACCCCGCATATGCTGTACTCGCCGTCAGAACCTCGGGGCTTGCGCCTCCT
CACTCAGAGTCCAACATCACCGTGGCGCCACCCGCAGCCCGCACACGGGA
GTGCCCCCCTTGCCGAGTCGGAGGGTTGCCCCTCCCCTCCGTACCCTCCC
GGGCCCCTGGCCGCATCTCGAGCCCACACAATCCAAGATATGCGTATGCC
ATTCCTTGCACGGCGCGCACGTGCAGTTCGCCCGCCGCCTCTCGGCCGCG
ACCGGGCCCAGCCCCAGCAGACAATGTAGCCTGA
back to top