mRNA_S-ischiensis_contig8.19485.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19485.1
Unique NamemRNA_S-ischiensis_contig8.19485.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.100e-48
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 3 
Query:  234 QSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            +SYGSY+ KVLKQVHPDTGISKRGMSIMNSFINDVFER+A EAGKLTRY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   28 ESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.370e-46
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 3 
Query:  234 QSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            +SYGSY+ KVLKQVHPDTGISKRGMSIMNSFINDVFER+A EAGKLTRY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  161 ESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 4.910e-46
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 3 
Query:  234 QSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            +SY SY+ KVLKQVHPDTGISKRGMSIMNSFINDVFERVA E+GKLTRY+KK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   27 ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.620e-46
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            ++SY +Y+ KVLKQVHP+TGISKRGMSIMNSFIND+FER+A EAGKL+RY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   28 IESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A8J5MIZ0_9STRA (Histone domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MIZ0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.150e-45
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            V+SY +Y+ KVL+QVHPDTGISKRGMSIMNSFIND+FER+A EAGKL+RY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   31 VESYSTYIYKVLRQVHPDTGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 121
[Close]
BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: M4B6M3_HYAAE (Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B6M3_HYAAE)

HSP 1 Score: 158 bits (399), Expect = 4.030e-45
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            V+SY +Y+ KVL+QVHP+TGISKRGMSIMNSFIND+FER+A EAGKL+RY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   27 VESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 117
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A835YLA9_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.550e-44
Identity = 78/90 (86.67%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 500
            V+SY SY+ KVLKQVHPDTGISKRGMS+MNSFINDVFER+A EAG+LTRY+ + TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:   49 VESYSSYIYKVLKQVHPDTGISKRGMSVMNSFINDVFERIASEAGRLTRYNNRQTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 138
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BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: M4B6T6_HYAAE (Histone H2B n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6T6_HYAAE)

HSP 1 Score: 158 bits (399), Expect = 1.800e-44
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            V+SY +Y+ KVL+QVHP+TGISKRGMSIMNSFIND+FER+A EAGKL+RY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   75 VESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSA 165
[Close]
BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.420e-44
Identity = 77/91 (84.62%), Postives = 86/91 (94.51%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            V+SY +Y+ KVLKQVHPDTGISK+GMSIMNSFIND+FER+A EAGKL  Y+KK+TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   29 VESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 119
[Close]
BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.410e-44
Identity = 77/91 (84.62%), Postives = 86/91 (94.51%), Query Frame = 3 
Query:  231 VQSYGSYMCKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 503
            V+SYGSY+ KVLKQVHPDTGISKRG+SI+NSFI D+F+R+A EAGKL RY+KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   26 VESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ22_9STRA4.100e-4893.33Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA2.370e-4693.33Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
D7FWI8_ECTSI4.910e-4690.00Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A485K2U0_9STRA7.620e-4686.81Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A8J5MIZ0_9STRA1.150e-4586.81Histone domain-containing protein n=1 Tax=Phytopht... [more]
M4B6M3_HYAAE4.030e-4585.71Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B... [more]
A0A835YLA9_9STRA1.550e-4486.67Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
M4B6T6_HYAAE1.800e-4485.71Histone H2B n=1 Tax=Hyaloperonospora arabidopsidis... [more]
A0A7S4ACZ1_9STRA3.420e-4484.62Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]
W7TEP7_9STRA6.410e-4484.62Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1715070..1715984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.8e-37
Seed eggNOG ortholog112098.XP_008609969.1
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categorysignal peptide
Exons1
Model size915
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19485.1prot_S-ischiensis_contig8.19485.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1715201..1715575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.2631378-UTR-S-ischiensis_contig8:1715069..17152001622817284.2631378-UTR-S-ischiensis_contig8:1715069..1715200Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1715070..1715200 +
1695740995.1334403-UTR-S-ischiensis_contig8:1715069..17152001695740995.1334403-UTR-S-ischiensis_contig8:1715069..1715200Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1715070..1715200 +
1622817284.2904227-UTR-S-ischiensis_contig8:1715575..17159841622817284.2904227-UTR-S-ischiensis_contig8:1715575..1715984Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1715576..1715984 +
1695740995.1595035-UTR-S-ischiensis_contig8:1715575..17159841695740995.1595035-UTR-S-ischiensis_contig8:1715575..1715984Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1715576..1715984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817284.2755535-CDS-S-ischiensis_contig8:1715200..17155751622817284.2755535-CDS-S-ischiensis_contig8:1715200..1715575Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1715201..1715575 +
1695740995.147452-CDS-S-ischiensis_contig8:1715200..17155751695740995.147452-CDS-S-ischiensis_contig8:1715200..1715575Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1715201..1715575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19485.1

>prot_S-ischiensis_contig8.19485.1 ID=prot_S-ischiensis_contig8.19485.1|Name=mRNA_S-ischiensis_contig8.19485.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=125bp
MSCLSRVLGFSWLLCCSRGDHCLTILRRLFSVLVQSYGSYMCKVLKQVHP
DTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRL
MLPGELAKHAVSEGTKAVTKFTSS*
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mRNA from alignment at S-ischiensis_contig8:1715070..1715984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19485.1 ID=mRNA_S-ischiensis_contig8.19485.1|Name=mRNA_S-ischiensis_contig8.19485.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=915bp|location=Sequence derived from alignment at S-ischiensis_contig8:1715070..1715984+ (Schizocladia ischiensis KU_0333)
AGGCCGGGGACAAGAAGAAGAACACCAAGCGCACCGAGGTGGTCTTTTCA
ACAGATTGTGGTTGCTCTGGTGTATGAAACCATGGGACACAGTTGGCACT
GTCCAAACTGGCGCCTTTGCACGATTTCCGCATGAGCTGCCTGTCCCGTG
TGCTTGGCTTCTCTTGGCTGCTCTGTTGCTCCCGTGGCGATCATTGCCTG
ACGATCCTCCGTCGTCTGTTCTCTGTTCTTGTGCAGAGCTATGGCAGCTA
CATGTGCAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGC
GCGGCATGTCCATCATGAACAGCTTCATCAACGACGTGTTCGAGCGCGTG
GCACTGGAGGCCGGCAAGCTGACCCGCTACAGCAAGAAGTCCACCCTGTC
CTCCCGGGAGATCCAGACGGCTGTGCGCCTCATGCTGCCGGGCGAGCTTG
CCAAGCACGCTGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCC
TCCTAAGTGCGAGCGCCCGGTTGGTTGACCCTCGACCGACCATGCACTTC
CAAATCGCCACCGCACATCGTTGGTGCGAAACATCTGCCATTAACTCGGT
GCTTTGTAGCACCACGCTATTCCAAAGAATCCACCAGCAAACCCAACTCC
CGTTCCAGGCGGCCAGCCCAGTTTAAAGCCGTTCTCATGGGCTCTTTCAA
ATGGTGAGCTGAAAGTCCCCGGTATTTTCATCCGTTTGAGGCACCCACTG
GATTGGGCCAGCTATTGCCGTTCAGACTGGTCGGACCCAAATGTAAATAG
GGCAACCGCAGGCCGATGATGCATCCCCCCATTTTGCCAGTGGTGCAAGT
ACTTGTACGAAGTGTTTATTAGCAGGAACTCCACGGGGCGAAGTGCAAGC
CAGTTAACTGCAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1715070..1715984+

>mRNA_S-ischiensis_contig8.19485.1 ID=mRNA_S-ischiensis_contig8.19485.1|Name=mRNA_S-ischiensis_contig8.19485.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=750bp|location=Sequence derived from alignment at S-ischiensis_contig8:1715070..1715984+ (Schizocladia ischiensis KU_0333)
ATGAGCTGCCTGTCCCGTGTGCTTGGCTTCTCTTGGCTGCTCTGTTGCTC
CCGTGGCGATCATTGCCTGACGATCCTCCGTCGTCTGTTCTCTGTTCTTG
TGCAGAGCTATGGCAGCTACATGTGCAAGGTGCTCAAGCAGGTGCACCCC
GACACTGGTATCTCCAAGCGCGGCATGTCCATCATGAACAGCTTCATCAA
CGACGTGTTCGAGCGCGTGGCACTGGAGGCCGGCAAGCTGACCCGCTACA
GCAAGAAGTCCACCCTGTCCTCCCGGGAGATCCAGACGGCTGTGCGCCTC
ATGCTGCCGGGCGAGCTTGCCAAGCACGCTGTGTCCGAGGGCACCAAGGC
CGTCACCAAGTTCACCTCCTCCTAAATGAGCTGCCTGTCCCGTGTGCTTG
GCTTCTCTTGGCTGCTCTGTTGCTCCCGTGGCGATCATTGCCTGACGATC
CTCCGTCGTCTGTTCTCTGTTCTTGTGCAGAGCTATGGCAGCTACATGTG
CAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGCGGCA
TGTCCATCATGAACAGCTTCATCAACGACGTGTTCGAGCGCGTGGCACTG
GAGGCCGGCAAGCTGACCCGCTACAGCAAGAAGTCCACCCTGTCCTCCCG
GGAGATCCAGACGGCTGTGCGCCTCATGCTGCCGGGCGAGCTTGCCAAGC
ACGCTGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAA
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