mRNA_S-ischiensis_contig8.19482.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19482.1
Unique NamemRNA_S-ischiensis_contig8.19482.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1708813..1709701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.2640543-CDS-S-ischiensis_contig8:1708812..17089411622817259.2640543-CDS-S-ischiensis_contig8:1708812..1708941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1708813..1708941 -
1695740976.19748-CDS-S-ischiensis_contig8:1708812..17089411695740976.19748-CDS-S-ischiensis_contig8:1708812..1708941Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1708813..1708941 -
1622817259.2764068-CDS-S-ischiensis_contig8:1709518..17097011622817259.2764068-CDS-S-ischiensis_contig8:1709518..1709701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1709519..1709701 -
1695740976.2086098-CDS-S-ischiensis_contig8:1709518..17097011695740976.2086098-CDS-S-ischiensis_contig8:1709518..1709701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1709519..1709701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19482.1prot_S-ischiensis_contig8.19482.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1708813..1709701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19482.1

>prot_S-ischiensis_contig8.19482.1 ID=prot_S-ischiensis_contig8.19482.1|Name=mRNA_S-ischiensis_contig8.19482.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
TAANTTLGGEPRRCSQQIMAPRDHGDVERRRSTQSIKRTVAYIRLVEMGF
TPSLVADAVAQACQRRRCEAVDAQHLSRSSPVVNEALDTLLQWGCVPDTA
DIQV
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mRNA from alignment at S-ischiensis_contig8:1708813..1709701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19482.1 ID=mRNA_S-ischiensis_contig8.19482.1|Name=mRNA_S-ischiensis_contig8.19482.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=889bp|location=Sequence derived from alignment at S-ischiensis_contig8:1708813..1709701- (Schizocladia ischiensis KU_0333)
ACGGCAGCGAACACGACCCTGGGGGGAGAGCCCCGGAGGTGCAGTCAGCA
AATTATGGCGCCGCGGGATCATGGCGACGTGGAGCGGCGAAGGAGCACGC
AGTCAATCAAGAGAACCGTGGCGTACATCAGGCTTGTTGAAATGGGCTTC
ACACCGAGTCTGGTCGCCGACGCCGTAGCGCAGGTGAGGGTGGGCACTAC
CTCCGCGCGTGCCGCAAAATGGTACACTGCGAAAGATGGGGACCGTTGAG
ATGCTCATCACGCTAAGCGTACACGACATTGTTGCATGCCGGCCTGGGTG
ATCGACAGCTGAGGCTCAACCTCTGAAGAACGACGTCTTCGTGCTGTCGA
CGATGCTCACCCCAGCCATGAGAGACGATGCCGCCACTGATAGCGCGTTC
GTGTACTCTAGTATGTTAGTGCTTCAACGATCGATGCCTTGCCACATGAG
TTGCAGGGTCTTGCCCTCATTGCTCGGCCTTGGTCTTGAATGTCTACTAC
TGTAGTAGTGCATCGATGATTGCAGAGGTTGCCACCATGCCTTGGCAAGG
GCTGGTTGTGACACGGGGAACTGACAGGACAATACTCTCAACACGTGGGC
ACACAATCCTCTGTTCAAGTAATGCACATCGCAGGTTCTTGTCATGGCCC
GCTGTTCACCGCGGGCAAAGCCCCCGTATTGTGTGATTGATGCTAAAAAA
CCACCCTCGTCCGCCCAACGCGCCGTCCTGCGCTGCGGCTTTGTGCTATG
CCTCCACCAGGCATGCCAACGCCGGAGATGTGAGGCAGTGGACGCGCAGC
ACCTCTCTCGATCATCGCCTGTGGTGAATGAGGCATTGGACACGTTGCTG
CAGTGGGGATGTGTCCCCGATACAGCCGACATCCAGGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1708813..1709701-

>mRNA_S-ischiensis_contig8.19482.1 ID=mRNA_S-ischiensis_contig8.19482.1|Name=mRNA_S-ischiensis_contig8.19482.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig8:1708813..1709701- (Schizocladia ischiensis KU_0333)
ACGGCAGCGAACACGACCCTGGGGGGAGAGCCCCGGAGGTGCAGTCAGCA
AATTATGGCGCCGCGGGATCATGGCGACGTGGAGCGGCGAAGGAGCACGC
AGTCAATCAAGAGAACCGTGGCGTACATCAGGCTTGTTGAAATGGGCTTC
ACACCGAGTCTGGTCGCCGACGCCGTAGCGCAGACGGCAGCGAACACGAC
CCTGGGGGGAGAGCCCCGGAGGTGCAGTCAGCAAATTATGGCGCCGCGGG
ATCATGGCGACGTGGAGCGGCGAAGGAGCACGCAGTCAATCAAGAGAACC
GTGGCGTACATCAGGCTTGTTGAAATGGGCTTCACACCGAGTCTGGTCGC
CGACGCCGTAGCGCAGGCATGCCAACGCCGGAGATGTGAGGCAGTGGACG
CGCAGCACCTCTCTCGATCATCGCCTGTGGTGAATGAGGCATTGGACACG
TTGCTGCAGTGGGGATGTGTCCCCGATACAGCCGACATCCAGGTGGCATG
CCAACGCCGGAGATGTGAGGCAGTGGACGCGCAGCACCTCTCTCGATCAT
CGCCTGTGGTGAATGAGGCATTGGACACGTTGCTGCAGTGGGGATGTGTC
CCCGATACAGCCGACATCCAGGTG
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