mRNA_S-ischiensis_contig8.19480.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19480.1
Unique NamemRNA_S-ischiensis_contig8.19480.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1705572..1706673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size556
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19480.1prot_S-ischiensis_contig8.19480.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1705594..1705938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.8088996-UTR-S-ischiensis_contig8:1705571..17055931622817266.8088996-UTR-S-ischiensis_contig8:1705571..1705593Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1705572..1705593 -
1695740981.116163-UTR-S-ischiensis_contig8:1705571..17055931695740981.116163-UTR-S-ischiensis_contig8:1705571..1705593Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1705572..1705593 -
1622817266.8314316-UTR-S-ischiensis_contig8:1705938..17060521622817266.8314316-UTR-S-ischiensis_contig8:1705938..1706052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1705939..1706052 -
1695740981.138624-UTR-S-ischiensis_contig8:1705938..17060521695740981.138624-UTR-S-ischiensis_contig8:1705938..1706052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1705939..1706052 -
1622817266.847478-UTR-S-ischiensis_contig8:1706598..17066731622817266.847478-UTR-S-ischiensis_contig8:1706598..1706673Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1706599..1706673 -
1695740981.149036-UTR-S-ischiensis_contig8:1706598..17066731695740981.149036-UTR-S-ischiensis_contig8:1706598..1706673Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1706599..1706673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.8200057-CDS-S-ischiensis_contig8:1705593..17059381622817266.8200057-CDS-S-ischiensis_contig8:1705593..1705938Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1705594..1705938 -
1695740981.128552-CDS-S-ischiensis_contig8:1705593..17059381695740981.128552-CDS-S-ischiensis_contig8:1705593..1705938Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1705594..1705938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19480.1

>prot_S-ischiensis_contig8.19480.1 ID=prot_S-ischiensis_contig8.19480.1|Name=mRNA_S-ischiensis_contig8.19480.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
MATATAAERGSKCQWPLRRSGRVKHRREGRPEPSAREAWPAAELEEPERQ
LGPFGLRRAARGSLDPRQWPSEPRYGSCDVDEAKRRPLPEPPTSPASCER
RQGGAQRWWWWRRL*
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mRNA from alignment at S-ischiensis_contig8:1705572..1706673-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19480.1 ID=mRNA_S-ischiensis_contig8.19480.1|Name=mRNA_S-ischiensis_contig8.19480.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1102bp|location=Sequence derived from alignment at S-ischiensis_contig8:1705572..1706673- (Schizocladia ischiensis KU_0333)
CGCTTCCCGCTCGCGGTCGCTGCTGCGGCCGGTGAAGGACAGGTTTGCCA
ACTTGGCCCGCTCCCGGTCCCCTAGGTGAGATTTGGCGGCGACACCCTCG
TGGGGGGGGGTCGTGGGGGAGGTTCTTGCTGGCGCGGCGGTTCTATCCCA
TGTTTGTGTGTGTGTGTGCCTGGTAGTCGCGTTCGTTCTCCGTTGTTGTC
TCTCAGTGTATGTCCCTTTTCTCTGGTGTGTGTGCATGCATTCATGTGTG
CATTTGTGCCTGTGTGCATGTGTGCGTGTGAGTGTGTGCGTGCGGGTAGG
TGTTTGTGTGTGAATGTGTGTATGTCCCTGTGTGCACGCATGCACGTGTG
TGTCTGCCCGTCCACTGGCGCGGCTCTGTCTGCTTCACAATTTTGGTCAC
GAGCCAGCCCAACACCACATACTGTTCTCGCATTGCCGTCTACCAAATCA
CGGCAGACCTTACCCACACCAGCTACACTTTCAATGCACGAGCGCTGGCC
GCCCGCGCATGAGGGAGACTGTAGTACTCGTACACGGTAGTCAGCTTAGC
CAATATGTGCCGACCCACCCCCGCCTCTGCGCCCCGCCCCGCCGTCACCC
ACTTGCCACCCCTCGGCACAGCCGGAAGCTTTCTCCGAGGGGCGGTGGGG
AGATTGCCCCCGGCTGGGAACACACCCCGCGCAGCCGGCCATCGCCCGGC
CCTGGCCAGGCGGGCGCAGATGATGTGGGGGCTCCATGGCAACCGCAACG
GCCGCAGAGAGGGGGAGCAAATGCCAGTGGCCACTGCGGCGCTCAGGCCG
GGTCAAGCATCGCCGCGAGGGCAGGCCCGAGCCCTCGGCCCGTGAGGCTT
GGCCTGCGGCAGAGCTCGAGGAGCCGGAGCGGCAGCTGGGGCCATTTGGC
CTAAGGCGGGCCGCCCGGGGCTCCCTGGACCCGAGGCAGTGGCCAAGTGA
GCCGAGATACGGCAGCTGTGACGTCGACGAGGCTAAGAGAAGGCCTCTTC
CGGAACCGCCGACAAGCCCTGCTTCATGTGAAAGGCGGCAGGGCGGCGCC
CAAAGGTGGTGGTGGTGGCGGCGGTTGTAAAGCGGTGGTTGGGGTTGGGG
AG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1705572..1706673-

>mRNA_S-ischiensis_contig8.19480.1 ID=mRNA_S-ischiensis_contig8.19480.1|Name=mRNA_S-ischiensis_contig8.19480.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig8:1705572..1706673- (Schizocladia ischiensis KU_0333)
ATGGCAACCGCAACGGCCGCAGAGAGGGGGAGCAAATGCCAGTGGCCACT
GCGGCGCTCAGGCCGGGTCAAGCATCGCCGCGAGGGCAGGCCCGAGCCCT
CGGCCCGTGAGGCTTGGCCTGCGGCAGAGCTCGAGGAGCCGGAGCGGCAG
CTGGGGCCATTTGGCCTAAGGCGGGCCGCCCGGGGCTCCCTGGACCCGAG
GCAGTGGCCAAGTGAGCCGAGATACGGCAGCTGTGACGTCGACGAGGCTA
AGAGAAGGCCTCTTCCGGAACCGCCGACAAGCCCTGCTTCATGTGAAAGG
CGGCAGGGCGGCGCCCAAAGGTGGTGGTGGTGGCGGCGGTTGTAAATGGC
AACCGCAACGGCCGCAGAGAGGGGGAGCAAATGCCAGTGGCCACTGCGGC
GCTCAGGCCGGGTCAAGCATCGCCGCGAGGGCAGGCCCGAGCCCTCGGCC
CGTGAGGCTTGGCCTGCGGCAGAGCTCGAGGAGCCGGAGCGGCAGCTGGG
GCCATTTGGCCTAAGGCGGGCCGCCCGGGGCTCCCTGGACCCGAGGCAGT
GGCCAAGTGAGCCGAGATACGGCAGCTGTGACGTCGACGAGGCTAAGAGA
AGGCCTCTTCCGGAACCGCCGACAAGCCCTGCTTCATGTGAAAGGCGGCA
GGGCGGCGCCCAAAGGTGGTGGTGGTGGCGGCGGTTGTAA
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