mRNA_S-ischiensis_contig8.19474.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19474.1
Unique NamemRNA_S-ischiensis_contig8.19474.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 9.300e-31
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 2 
Query:  338 QVAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            QVAEPG VYFV TPIGNLEDITLRA+NILRTADV+AAEDTRTTG LLKLLGVER+GR++SHH  N +RRVPE+VE A
Sbjct:  178 QVAEPGMVYFVSTPIGNLEDITLRAMNILRTADVIAAEDTRTTGSLLKLLGVERKGRLVSHHDHNTKRRVPEIVEAA 254
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.570e-30
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 2 
Query:  338 QVAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            QVAEPG VYFV TPIGNLEDITLRA+NILRTA+V+AAEDTRTTG LLKLLGVER+GR++SHH  N +RRVPE+V+ A
Sbjct:  185 QVAEPGVVYFVSTPIGNLEDITLRAMNILRTAEVIAAEDTRTTGSLLKLLGVEREGRLVSHHDHNTKRRVPEIVQAA 261
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A7S2UST8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UST8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.010e-21
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:  335 RQVAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVE 562
            R  A PGTVYFV TPIGNL DITLRAL+ILR+ D +A+EDTR TGRLL+LLG+ ++ +  SHH  N R+RVP+L++
Sbjct:   41 RSTAVPGTVYFVATPIGNLGDITLRALDILRSCDAVASEDTRRTGRLLQLLGIPKKAQF-SHHEHNWRQRVPQLLD 115
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A6V1TAB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TAB6_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 8.650e-19
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 2 
Query:  314 DGFVVE----GRQVAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            DG + E    G   A+PGTVYFV TPIGNL DIT RA  ILRT D++A+EDTR TGRLL+ L   ++ R ISHH  N + RVP+L+ LA
Sbjct:   95 DGHIFEVGEHGGSKAQPGTVYFVATPIGNLGDITYRAAEILRTVDIVASEDTRRTGRLLQYLNAGKK-RQISHHEHNWKGRVPQLIALA 182
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A4D9CZ36_9STRA (TP_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ36_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.570e-18
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:  350 PGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            PGT+YFV TP+GNL DITLRAL++LR  D++A+EDTRTTG LLK LG+ ++ + +SHH  N++ RVP+L+  A
Sbjct:    2 PGTIYFVSTPLGNLGDITLRALDVLRGVDLIASEDTRTTGLLLKALGLGKKPQ-VSHHQHNIQSRVPDLIRRA 73
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A7S2R6H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6H6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.260e-17
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 2 
Query:  359 VYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELAM 571
            V+FV TP+G+L+D+T RA+++LR ADV+AAEDTR TGRLL LLG+  +GR+ S HA N R +V  LV+ A+
Sbjct:    1 VHFVATPLGHLDDVTFRAVSVLREADVIAAEDTRRTGRLLDLLGIPARGRLQSFHAHNWRSKVDNLVQRAL 71
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: A0A7S0LHT1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHT1_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.640e-17
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 2 
Query:  353 GTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            G VYFV TPIG+LEDIT+RA+  LRTADV+A EDTR T RLL  LGV ++ R++SHH  N    VP+L+ LA
Sbjct:   11 GHVYFVSTPIGHLEDITIRAIRTLRTADVIACEDTRHTARLLHHLGVGKK-RLVSHHEHNTHTAVPKLIALA 81
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: W7TJ55_9STRA (Tetrapyrrole methylase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ55_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.350e-17
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:  350 PGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVELA 568
            PGT+YFV TP+GNL DITLRAL++LR  D++A+EDTRTTG LLK LG+ ++ + +SHH  N++ RVP+L+  A
Sbjct:  134 PGTIYFVSTPLGNLGDITLRALDVLRGVDLIASEDTRTTGLLLKALGLGKKPQ-VSHHQHNIQSRVPDLIRRA 205
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: UPI001A07BB1B (16S rRNA (Cytidine(1402)-2'-O)-methyltransferase n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI001A07BB1B)

HSP 1 Score: 84.0 bits (206), Expect = 4.170e-16
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:  341 VAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVE 562
            +A+PGT+Y VGTPIGNLEDI+LRAL ILR  D++AAEDTR TGRLL+   +      IS+HA N ++R P L+E
Sbjct:    1 MADPGTLYLVGTPIGNLEDISLRALRILRDVDLIAAEDTRHTGRLLQHFQINTP--QISYHAHNRQQRQPHLLE 72
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BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Match: I7JY51_9LACO (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 TaxID=1423790 RepID=I7JY51_9LACO)

HSP 1 Score: 83.6 bits (205), Expect = 5.710e-16
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:  347 EPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTTGRLLKLLGVERQGRMISHHAKNLRRRVPELVEL 565
            E G +Y V TPIGNLEDIT+RA NIL  AD +AAEDTRT+G LL+ LG+  Q  MIS H  N ++R PEL+EL
Sbjct:   10 EQGKLYLVPTPIGNLEDITIRAKNILSQADYIAAEDTRTSGILLEKLGIHNQ--MISFHKYNSKQRAPELIEL 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL3_ECTSI9.300e-3181.82TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JVG6_9PHAE4.570e-3079.22TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A7S2UST8_9STRA1.010e-2163.16Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6V1TAB6_HETAK8.650e-1957.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CZ36_9STRA7.570e-1858.90TP_methylase domain-containing protein n=1 Tax=Nan... [more]
A0A7S2R6H6_9STRA1.260e-1757.75Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0LHT1_9EUKA1.640e-1761.11Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TJ55_9STRA2.350e-1758.90Tetrapyrrole methylase family protein n=2 Tax=Nann... [more]
UPI001A07BB1B4.170e-1659.4616S rRNA (Cytidine(1402)-2'-O)-methyltransferase n... [more]
I7JY51_9LACO5.710e-1661.64Ribosomal RNA small subunit methyltransferase I n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1671038..1672217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog2880.D8LLL3
KEGG koko:K07056
EggNOG free text desc.Tetrapyrrole (Corrin/Porphyrin) Methylases
EggNOG OGs2QQ7V@2759,COG0313@1
EC2.1.1.198
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categorysignal peptide
Exons2
Model size571
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19474.1prot_S-ischiensis_contig8.19474.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1671038..1672201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.0934212-CDS-S-ischiensis_contig8:1671037..16712001622817259.0934212-CDS-S-ischiensis_contig8:1671037..1671200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1671038..1671200 -
1695740976.0652137-CDS-S-ischiensis_contig8:1671037..16712001695740976.0652137-CDS-S-ischiensis_contig8:1671037..1671200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1671038..1671200 -
1622817259.1080887-CDS-S-ischiensis_contig8:1671809..16722011622817259.1080887-CDS-S-ischiensis_contig8:1671809..1672201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1671810..1672201 -
1695740976.0813596-CDS-S-ischiensis_contig8:1671809..16722011695740976.0813596-CDS-S-ischiensis_contig8:1671809..1672201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1671810..1672201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.1195436-UTR-S-ischiensis_contig8:1672201..16722171622817259.1195436-UTR-S-ischiensis_contig8:1672201..1672217Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1672202..1672217 -
1695740976.0985537-UTR-S-ischiensis_contig8:1672201..16722171695740976.0985537-UTR-S-ischiensis_contig8:1672201..1672217Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1672202..1672217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19474.1

>prot_S-ischiensis_contig8.19474.1 ID=prot_S-ischiensis_contig8.19474.1|Name=mRNA_S-ischiensis_contig8.19474.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
MAAATHGRVVSQILRLGGTITAVVFSGLAALAETGALRPPRTPGRMLGSH
AAARGVGLAGGIRRWGECGPARAVGVWGRPRPSVRDASTARRRPRFAVAD
GFVVEGRQVAEPGTVYFVGTPIGNLEDITLRALNILRTADVLAAEDTRTT
GRLLKLLGVERQGRMISHHAKNLRRRVPELVELAM
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mRNA from alignment at S-ischiensis_contig8:1671038..1672217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19474.1 ID=mRNA_S-ischiensis_contig8.19474.1|Name=mRNA_S-ischiensis_contig8.19474.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1180bp|location=Sequence derived from alignment at S-ischiensis_contig8:1671038..1672217- (Schizocladia ischiensis KU_0333)
ACGGGGCCTAGGGGCGATGGCGGCAGCCACGCACGGCCGTGTTGTAAGCC
AGATTCTCCGGTTGGGAGGAACAATCACGGCGGTCGTGTTTTCGGGGCTT
GCCGCCCTGGCGGAGACGGGGGCGCTCAGACCGCCGCGAACTCCAGGTAG
AATGCTCGGATCACATGCCGCCGCGCGCGGGGTCGGATTGGCAGGCGGAA
TCAGACGCTGGGGCGAGTGCGGGCCTGCACGTGCCGTGGGAGTGTGGGGA
AGGCCGAGGCCCAGCGTCCGAGATGCTTCAACTGCTCGGAGGAGGCCGAG
GTTTGCTGTGGCCGACGGCTTTGTCGTGGAGGGCAGGCAGGTGGCGGAGC
CAGGGACGGTGTACTTTGTGGGGACCCCCATTGGAAATCTCGAAGACATC
ACGCTCAGGTGACTTCGCTTGCCGTTGTCCCATCGCAGTTCACATGCCCA
CAAGGGGGCATGGAAGAGCCCGCCGCTAACCGCGGCCCAAAAAGTAGTTG
CCTTTTTTGCGACACAAAGACACAGTAGGCGAGGGCCAACGCACCCCTCT
GCAGCCGCCGACCGACATATTCCCAGTGGTCAGCCGCTTGCTTACCGCCG
TAGTTCCTCATACTTCCGTGCTGATACGAACGATTTTTGTGCACAAGAAG
AGGAAGGGAAAGGCCGAGTTGTGGGGGGGGCAGCACGAAAGTCAGCGAGC
CCGGCGCCGCCGTCCCAAACCTCGCACAACTGGCATAGCTTCCGCCTACA
CACCTGCCACGCCTGTCCTCTCTTCTCCGTTTTAGCTGCAGCCACTGCTT
CTCTGCCTCGCATTCGCCCCCCCCTACATGCAGCTGCCCTGCCGTACCCA
AGGAAACAACGTCACCCTACGGGGCTACCATCACCGGCCCCTGCTGCCAC
CAGTCTCGCCACCGCTACCGCTACCGCGACCGCCGCCGCCATTGCCCCTC
CCACCGCCTCCCTCCCCCGGTCGTAATCCCCGGCCTGCTCTGCCACGCTG
ACGATGCCGGCGAACAGGGCGCTGAACATCCTGCGCACGGCAGACGTGCT
TGCGGCCGAAGACACTCGCACCACCGGACGCCTGCTCAAGCTGTTGGGGG
TGGAGCGGCAGGGACGCATGATTAGCCACCATGCCAAGAACCTTCGCCGC
CGCGTACCGGAGCTGGTGGAGCTGGCAATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1671038..1672217-

>mRNA_S-ischiensis_contig8.19474.1 ID=mRNA_S-ischiensis_contig8.19474.1|Name=mRNA_S-ischiensis_contig8.19474.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig8:1671038..1672217- (Schizocladia ischiensis KU_0333)
ATGGCGGCAGCCACGCACGGCCGTGTTGTAAGCCAGATTCTCCGGTTGGG
AGGAACAATCACGGCGGTCGTGTTTTCGGGGCTTGCCGCCCTGGCGGAGA
CGGGGGCGCTCAGACCGCCGCGAACTCCAGGTAGAATGCTCGGATCACAT
GCCGCCGCGCGCGGGGTCGGATTGGCAGGCGGAATCAGACGCTGGGGCGA
GTGCGGGCCTGCACGTGCCGTGGGAGTGTGGGGAAGGCCGAGGCCCAGCG
TCCGAGATGCTTCAACTGCTCGGAGGAGGCCGAGGTTTGCTGTGGCCGAC
GGCTTTGTCGTGGAGGGCAGGCAGGTGGCGGAGCCAGGGACGGTGTACTT
TGTGGGGACCCCCATTGGAAATCTCGAAGACATCACGCTCAGATGGCGGC
AGCCACGCACGGCCGTGTTGTAAGCCAGATTCTCCGGTTGGGAGGAACAA
TCACGGCGGTCGTGTTTTCGGGGCTTGCCGCCCTGGCGGAGACGGGGGCG
CTCAGACCGCCGCGAACTCCAGGTAGAATGCTCGGATCACATGCCGCCGC
GCGCGGGGTCGGATTGGCAGGCGGAATCAGACGCTGGGGCGAGTGCGGGC
CTGCACGTGCCGTGGGAGTGTGGGGAAGGCCGAGGCCCAGCGTCCGAGAT
GCTTCAACTGCTCGGAGGAGGCCGAGGTTTGCTGTGGCCGACGGCTTTGT
CGTGGAGGGCAGGCAGGTGGCGGAGCCAGGGACGGTGTACTTTGTGGGGA
CCCCCATTGGAAATCTCGAAGACATCACGCTCAGGGCGCTGAACATCCTG
CGCACGGCAGACGTGCTTGCGGCCGAAGACACTCGCACCACCGGACGCCT
GCTCAAGCTGTTGGGGGTGGAGCGGCAGGGACGCATGATTAGCCACCATG
CCAAGAACCTTCGCCGCCGCGTACCGGAGCTGGTGGAGCTGGCAATGGGC
GCTGAACATCCTGCGCACGGCAGACGTGCTTGCGGCCGAAGACACTCGCA
CCACCGGACGCCTGCTCAAGCTGTTGGGGGTGGAGCGGCAGGGACGCATG
ATTAGCCACCATGCCAAGAACCTTCGCCGCCGCGTACCGGAGCTGGTGGA
GCTGGCAATG
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