mRNA_S-ischiensis_contig8.19473.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19473.1
Unique NamemRNA_S-ischiensis_contig8.19473.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1664797..1665985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size411
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19473.1prot_S-ischiensis_contig8.19473.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1664937..1665985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.0352497-UTR-S-ischiensis_contig8:1664796..16649361622817259.0352497-UTR-S-ischiensis_contig8:1664796..1664936Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1664797..1664936 -
1695740976.0262253-UTR-S-ischiensis_contig8:1664796..16649361695740976.0262253-UTR-S-ischiensis_contig8:1664796..1664936Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1664797..1664936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817259.0459185-CDS-S-ischiensis_contig8:1664936..16649881622817259.0459185-CDS-S-ischiensis_contig8:1664936..1664988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1664937..1664988 -
1695740976.0364084-CDS-S-ischiensis_contig8:1664936..16649881695740976.0364084-CDS-S-ischiensis_contig8:1664936..1664988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1664937..1664988 -
1622817259.056178-CDS-S-ischiensis_contig8:1665767..16659851622817259.056178-CDS-S-ischiensis_contig8:1665767..1665985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1665768..1665985 -
1695740976.0499537-CDS-S-ischiensis_contig8:1665767..16659851695740976.0499537-CDS-S-ischiensis_contig8:1665767..1665985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1665768..1665985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19473.1

>prot_S-ischiensis_contig8.19473.1 ID=prot_S-ischiensis_contig8.19473.1|Name=mRNA_S-ischiensis_contig8.19473.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
RFLGALNTARCGNLRSTVDVVFVRPVEYSRRFLAALNTSRCGNLRSRLRA
LAQGGISTSAAVKLAAKDLGLNRSEVYKRALEVLAEQPQ*
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mRNA from alignment at S-ischiensis_contig8:1664797..1665985-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19473.1 ID=mRNA_S-ischiensis_contig8.19473.1|Name=mRNA_S-ischiensis_contig8.19473.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1189bp|location=Sequence derived from alignment at S-ischiensis_contig8:1664797..1665985- (Schizocladia ischiensis KU_0333)
CGTTTCCTTGGTGCGCTGAACACGGCCCGCTGTGGAAACTTGCGCAGTAC
AGTAGACGTTGTTTTTGTTCGTCCTGTAGAGTACAGTAGACGTTTCCTTG
CTGCGCTGAACACGTCCCGCTGTGGAAACTTGCGCTCCAGGCTCCGGGCG
CTGGCGCAGGGCGGTATCAGCACGTCAGCGGCCGTCAAACTGGCGGCCAA
GGACCTGGGCCTCAACAGGCGAGCTTTCCGCGCAACGAGTACCTATGCAC
GATGTACCTATGCACGATGGAGTGTTGGGCTGTGATTCCCGGAACTCGGA
CGCCGTCAAAACAGTTTTAAAATTGAGAGTGCGGAACTCGCACCCCATCA
CAATACTTCAAGAATTTATATAGTTCGGGACAGGGCCCGCAACTCGTAAG
CCGTCGAAAATGATCAGTGAAATGTGTTTGCGTGGTACAATCTGACCTGT
GTGAGATTGAGTGTGCTCGCTTGTCTTGAGTGGTTTGGTCAAGGGATAGT
TGATGACAATTGATTCGATTCTGGAGGCATTTAAGACTCAGGTAAAAGTA
TGGGTTCGCTAGAAGTGCTGGGCTACTCCCAGTGGTCTGCAGTGACTTCT
ACAAATGTTGTGGGAAGTCTTTACTTCACTACGTACTGCGTAATGTTGCC
ACGAGATCAACTGTCTCAGGACTACGGCAAGCACAGCGTGAGTACATGTA
CATATGTACTGCTGTTGCCACACTACTGTGTTGTTCCTGTTAGTACTACT
TTGAAGTATTTTGAAGTACTCATACTTCGAATACAATTTTTTACTGTGCT
GTAACAGTACTTCGTTAGTAGGTATTTCCGGAAGCGCAATGTACTCTGTA
CAGCACTTCTACTGCACTGCACTGTACACTCGTGACTCTCTCACCAACTC
AACCCTCTATCAAACACATCTCAGGCTTACAGGCCCGGGCACATCTGGCG
ACAGTCAGGCTGACATGATAATTTTGGCCTCGTTCTTTGACTCGCAGGTC
GGAAGTGTACAAGCGCGCGCTGGAGGTCCTTGCAGAGCAGCCACAATGAG
CTGCCCCATACAACATTCCTGGGGGCACTGCCCGGGAGCTGTTCAAGCTC
CCTGCGAACGAGCTTCGAACGACAACATTTAAAATAATGATGAACATTTG
GAGCTCTACGCACATGTTTCGTGGGACCCGAGGTGGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1664797..1665985-

>mRNA_S-ischiensis_contig8.19473.1 ID=mRNA_S-ischiensis_contig8.19473.1|Name=mRNA_S-ischiensis_contig8.19473.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig8:1664797..1665985- (Schizocladia ischiensis KU_0333)
CGTTTCCTTGGTGCGCTGAACACGGCCCGCTGTGGAAACTTGCGCAGTAC
AGTAGACGTTGTTTTTGTTCGTCCTGTAGAGTACAGTAGACGTTTCCTTG
CTGCGCTGAACACGTCCCGCTGTGGAAACTTGCGCTCCAGGCTCCGGGCG
CTGGCGCAGGGCGGTATCAGCACGTCAGCGGCCGTCAAACTGGCGGCCAA
GGACCTGGGCCTCAACAGCGTTTCCTTGGTGCGCTGAACACGGCCCGCTG
TGGAAACTTGCGCAGTACAGTAGACGTTGTTTTTGTTCGTCCTGTAGAGT
ACAGTAGACGTTTCCTTGCTGCGCTGAACACGTCCCGCTGTGGAAACTTG
CGCTCCAGGCTCCGGGCGCTGGCGCAGGGCGGTATCAGCACGTCAGCGGC
CGTCAAACTGGCGGCCAAGGACCTGGGCCTCAACAGGTCGGAAGTGTACA
AGCGCGCGCTGGAGGTCCTTGCAGAGCAGCCACAATGAGTCGGAAGTGTA
CAAGCGCGCGCTGGAGGTCCTTGCAGAGCAGCCACAATGA
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