mRNA_S-ischiensis_contig8.19472.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19472.1
Unique NamemRNA_S-ischiensis_contig8.19472.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB)

HSP 1 Score: 163 bits (413), Expect = 1.700e-41
Identity = 103/280 (36.79%), Postives = 152/280 (54.29%), Query Frame = 2
Query:  104 HSLDFTQAYLNASLQEDIRLELPDGNI-------VKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRR-SEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTE-GMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGY 916
            H++DF+ A+LN +L+E++ ++ P+G +        K  K+L+GLKQ+   W+  L   +  +G+  S  D CLYY   SE      LL YVDD A      E  N +     S Y+ RDLG  +  LG+ IT   TGI L Q+     +V + GM + +  +   P+  G  L+ + +D E LD   YPYA+++  L++LA  TRPD+A  V  L    A+P M HW   + VL YLAGT    ++Y+    S+    LIGY+DSD+  D +TRRS  G+
Sbjct:  948 HNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAKYGMENSNGRLL--PMSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHAAKGVLRYLAGTSTYGLNYSKAGSSS---TLIGYTDSDFAGDADTRRSTAGF 1221          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A182GNA3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNA3_AEDAL)

HSP 1 Score: 157 bits (397), Expect = 2.500e-41
Identity = 98/291 (33.68%), Postives = 160/291 (54.98%), Query Frame = 2
Query:   86 ASRMGR--HSLDFTQAYLNASLQ-EDIRLE------LPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLD----LGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            A+R+G   H LD   A+L   L  E+I +E      +P G + +  KAL+GLKQ++  W K+L + +   G   S  D C+Y+    D +  ++  YVDD     +  E ++ ++  L+  ++ +DLG  +Q+LG+R+T  +  I LDQ+ Y + ++ E  G  D    ++P D    L  ++S +  D+ E    + P+  ++  L F+A  TRPD+A +V  +    ++P   HW   + +L YL GT+D+ + Y+    S  E+   GYSD+DWGND ETRRSVTGY+
Sbjct:    4 AARLGLKIHQLDAVTAFLQGDLMDEEIYVEQPEGFAIPGGQVCRLKKALYGLKQASRVWNKKLDNVLREIGLQQSKMDSCVYFLIDGD-KILIVAVYVDDMLVFANDDEIVDALKQQLMVRFQMKDLGYAEQILGMRVTQVDGRITLDQEKYIEQLL-ERFGMNDCNPVSTPFDASQKLSKEMSPKSPDDVERMANV-PFRELVGGLQFVAQCTRPDIAFAVNAVSSFNSNPGEAHWTAAKRILRYLKGTKDMKLIYS----SESEESFHGYSDADWGNDPETRRSVTGYV 287          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060SQS6_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQS6_PYCCI)

HSP 1 Score: 149 bits (377), Expect = 1.770e-38
Identity = 89/281 (31.67%), Postives = 152/281 (54.09%), Query Frame = 2
Query:  110 LDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            +D   A+LN  L+E+I +E P+G +V+          KA++GLKQ++ +W  ++  ++L  G++ + +D  +Y YRR    +  +++ YVDD    GD  + I +++D L   Y+  DLG   + LG+RI+ D T   I +DQ+ Y +S++ E     D     +PL  G  L + +  +   D     Y S++  L++ A  TRPD+  +V +L    ++P   HW   ++VL YL GT+ + + Y    D      L+ YSDSDW  D + R+S+TG++
Sbjct:    1 MDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVTIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKRFLGLRISHDRTIRRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPKPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 276          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A8J6HPC5_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPC5_TENMO)

HSP 1 Score: 154 bits (390), Expect = 1.870e-38
Identity = 92/277 (33.21%), Postives = 150/277 (54.15%), Query Frame = 2
Query:  104 HSLDFTQAYLNASLQEDIRLELPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRIT--TDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSAR---RDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            H LDFT AYLN  ++E++ +E+P   +    KAL+GLKQS  + YK+L   +  +      +D C+Y  + EDG   +++ YVDD     D  +++ R++  L   +E +DLG     LG+  T   ++  I + Q  Y K I++         +TT P++L   LS     + +EE+   +L P+ S++  LM+LA  TRPD+A +V  L     +   +HWR  + +L YL  T+++ + +         Q L+GY+D+DWG  I+ RRS TGY+
Sbjct:  733 HQLDFTSAYLNGEIEEEVFMEVPRNKVCLIRKALYGLKQSGRQGYKKLDEKLKQQKLKPLNSDPCVYINK-EDGNIVIVVIYVDDLMVASDNPKKLQRLKLELSKSFEMKDLGPLSFCLGIEFTQNVEKQTITMSQSKYIKEILSRFNMENCKGVTT-PINLNEKLSKEMCPKTEEEKKPVELLPHQSLVGSLMYLAVSTRPDIAHAVSMLSQFNTNFGEQHWRAAKRILRYLKNTENLGLMF-----KKSGQELVGYADADWGASIDDRRSYTGYV 1002          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A1Y1KL90_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KL90_PHOPY)

HSP 1 Score: 153 bits (387), Expect = 2.190e-38
Identity = 100/281 (35.59%), Postives = 157/281 (55.87%), Query Frame = 2
Query:  101 RHSLDFTQAYLNASLQEDIRLELPDG-------NIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDT-AFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            RH LD   A+LN  L+E++ +  P+G        + K  KA++GLKQS+  W +++   ++   +  S  + CLY ++ E+G   V+  YVDD   FT D  EE N + + L S ++ ++LG   Q LG+RI  DE  I +DQ+ Y  +I+ +    LD     +PL+ G+ LS  +D     D  L PY  ++  LM++A MTRPD+A +V  L          HW+  + VL YL GT+    HY++   + DE  L+G++D+DWG+D + R+S TGY+
Sbjct:  347 RH-LDVKTAFLNGLLKENVFMMQPEGFVSDDKNKVFKLKKAVYGLKQSSRAWNEKVDQVLIDIAYRKSDYEPCLYTKKRENGMLTVVALYVDDFFVFTND-SEEYNFLENQLSSHFKIKNLGEARQCLGIRIVRDENCITIDQESYIVAIL-KRFNMLDCKSVCTPLENGIKLSKVKD--HTCDVSL-PYKELIGSLMYVAVMTRPDIAFAVSLLSQYNNCYTKIHWQNAKRVLRYLNGTK----HYSMKF-TKDESNLVGFADADWGSDEKDRKSYTGYV 616          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: B1N668_SOLLC (Copia LTR rider n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=B1N668_SOLLC)

HSP 1 Score: 154 bits (388), Expect = 3.570e-38
Identity = 94/282 (33.33%), Postives = 150/282 (53.19%), Query Frame = 2
Query:  110 LDFTQAYLNASLQEDIRLELPDG--------NIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETG--IILDQQLYTKSIVTE-GMGSLDLWITTSPLDLGMD-LSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            LD   A+L+  L+E+I +  PDG        ++ K  K+L+GLKQS  +WYK   S ++  G++ S+ D C+YY R  D     L+ YVDD         +I +++  L + +E +DLG   ++LG+ I  D     + L Q+ Y + ++   GM S     T S  ++ +  + A + +EE+      PYAS +  LM+    TRPDLA +V  +      P   HW+  + +  YL GT DV + Y  +T    + ++ GYSDSD+  D++TRRS+TGY+
Sbjct:  902 LDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDT----QCLVTGYSDSDYAGDVDTRRSMTGYV 1179          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060SJL7_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJL7_PYCCI)

HSP 1 Score: 153 bits (386), Expect = 4.290e-38
Identity = 93/294 (31.63%), Postives = 154/294 (52.38%), Query Frame = 2
Query:   71 LGHCCASRMGRHSLDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            L H         S+D   A+LN  L+E+I +E P+G +V+          KA++GLKQ++ +W  ++  ++L  G++ + +D  +Y YRR    +  +++ YVDD    GD  + I +++D L   Y+  DLG     LG+RI+ D T   I +DQ+ Y +S++ E     D     +PL  G  L + +  E   D     Y S++  L++ A  TRPD+  +V +L    ++P   HW   ++VL YL GT+ + + Y    D      L+ YSDSDW  D + R+S+TG++
Sbjct:  345 LAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVTIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKCFLGLRISRDRTIRRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPEPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 633          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU)

HSP 1 Score: 153 bits (386), Expect = 6.810e-38
Identity = 89/283 (31.45%), Postives = 152/283 (53.71%), Query Frame = 2
Query:  110 LDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTD--ETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRD---DEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            +D   A+L+  L+E+I ++ PDG +V+          K+L+GLKQ+  +WYK+ +S +  +G+  + +D C++ ++  +    +LL YVDD    G     INR++  L   +  +D+G   Q+LG+RI  D  E  + L Q+ Y K ++ +     +  + ++PL     LS ++    + E+ D +  PYAS +  LM+    TRPD+A  V  +    ++P   HW   + +L YL GT   C+         D+  L+GY+DSD G DI++RRS +GY+
Sbjct:  865 MDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVL-QRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGT--TCLRLCFG---GDKPTLVGYTDSDMGGDIDSRRSTSGYV 1141          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A6A3HC77_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HC77_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.380e-37
Identity = 87/275 (31.64%), Postives = 146/275 (53.09%), Query Frame = 2
Query:  113 DFTQAYLNASLQEDI------RLELPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            D   AYLNA L+         R   P G + + + AL+GL QS  EWY+E+   ++ +G+ ++  + CLY R  +DG  A++  YVDD     +  +   ++       Y  +D G+ ++ LGV+I   E+GI++ Q  Y K ++ +  G  +   + SP++  +      + E+  D   + Y + +  LM+L   TRPD+A  V  L    ++P  +H    + +L YLA T    I Y+ + D  D+ ++ G+SD+DWGND ETR+SVTG++
Sbjct:   22 DINTAYLNALLKIKQFVRGIPRFPWPKGKVYRVDHALYGLHQSGAEWYEEVDKFLISQGYDNTETEPCLYVRY-KDGVLALIPLYVDDVVLATNSEDYKTKLFLEFDKKYGFKDGGLANKFLGVQIEQSESGILIHQDQYCKEVL-DRFGYGEAHGSASPMETNVKFKPNEESEKNEDIS-FDYRAAIGSLMYLTTSTRPDIAFPVGYLSRFVSNPSKKHGGAVKRILRYLAATSRQGIKYSNDKDVTDQILVSGHSDADWGNDPETRKSVTGFV 293          
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060S2N0_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S2N0_PYCCI)

HSP 1 Score: 152 bits (383), Expect = 1.550e-37
Identity = 92/294 (31.29%), Postives = 154/294 (52.38%), Query Frame = 2
Query:   71 LGHCCASRMGRHSLDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
            L H         S+D   A+LN  L+E+I +E P+G +V+          KA++GLK ++ +W  ++  ++L  G++ + +D  +Y YRR    +  +++ YVDD    GD  + I +++D L   Y+  DLG   + LG+RI+ D T   I +DQ+ Y +S++ E     D     +PL  G  L + +  E   D     Y S++  L++ A  TRPD+  +V +L    ++P   HW   ++VL YL GT+ + + Y    D      L+ YSDSDW  D + R+S+TG++
Sbjct:  607 LAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKPASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVMIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKRFLGLRISCDRTIHRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPEPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 895          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383VEJ4_TETOB1.700e-4136.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A182GNA3_AEDAL2.500e-4133.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SQS6_PYCCI1.770e-3831.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HPC5_TENMO1.870e-3833.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1KL90_PHOPY2.190e-3835.59Integrase catalytic domain-containing protein (Fra... [more]
B1N668_SOLLC3.570e-3833.33Copia LTR rider n=1 Tax=Solanum lycopersicum TaxID... [more]
A0A060SJL7_PYCCI4.290e-3831.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
G8DCY4_PHAVU6.810e-3831.45Putative gag/pol polyprotein n=1 Tax=Phaseolus vul... [more]
A0A6A3HC77_9STRA1.380e-3731.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060S2N0_PYCCI1.550e-3731.29Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1660730..1661648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.1
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog161934.XP_010676254.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3894V@33090,3GY0Z@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size921
Cds size825
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.9348457-UTR-S-ischiensis_contig8:1660729..16608231622817283.9348457-UTR-S-ischiensis_contig8:1660729..1660823Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1660730..1660823 +
1695740994.9073591-UTR-S-ischiensis_contig8:1660729..16608231695740994.9073591-UTR-S-ischiensis_contig8:1660729..1660823Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1660730..1660823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817283.9470809-CDS-S-ischiensis_contig8:1660823..16616481622817283.9470809-CDS-S-ischiensis_contig8:1660823..1661648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1660824..1661648 +
1695740994.9232986-CDS-S-ischiensis_contig8:1660823..16616481695740994.9232986-CDS-S-ischiensis_contig8:1660823..1661648Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1660824..1661648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19472.1prot_S-ischiensis_contig8.19472.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1660824..1661648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19472.1

>prot_S-ischiensis_contig8.19472.1 ID=prot_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
MGRHSLDFTQAYLNASLQEDIRLELPDGNIVKANKALFGLKQSALEWYKE
LQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEIN
RMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMG
SLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRP
DLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDE
QVLIGYSDSDWGNDIETRRSVTGYI
back to top

mRNA from alignment at S-ischiensis_contig8:1660730..1661648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19472.1 ID=mRNA_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=919bp|location=Sequence derived from alignment at S-ischiensis_contig8:1660730..1661648+ (Schizocladia ischiensis KU_0333)
CTCAGCAACAAGGCGTGGACTTCTTCCAGACCTTCAGCCCCGTGTTTGGC CTTGACGTGATGCGGTCGGTCTTGGCCACTGCTGCGCGTCACGGATGGGC CGTCACTCCCTGGACTTCACCCAAGCATACCTGAACGCATCTCTTCAAGA AGACATCCGGCTCGAGCTGCCGGACGGGAACATCGTCAAGGCGAACAAGG CGCTCTTCGGCTTGAAGCAATCTGCTCTTGAGTGGTACAAGGAACTACAG AGCACAGTCCTGGGGGAGGGCTGGAGCAGCAGCGCCAACGACGAGTGTCT CTACTACCGCCGGAGCGAGGATGGGCGTGCTGCTGTACTACTGACGTATG TCGACGACACTGCCTTCACCGGCGACTACGGCGAGGAGATCAATAGAATG CGGGACACACTGCTGTCTATGTACGAGGGCCGAGACTTGGGCGTGCCTGA TCAACTGCTGGGAGTGCGGATTACCACGGACGAGACGGGAATCATTCTGG ATCAGCAACTGTACACCAAGAGCATCGTCACCGAGGGCATGGGATCTCTG GACCTGTGGATCACAACTTCACCGCTCGACCTTGGCATGGACCTGTCTGC GCGACGCGACGACGAGGAGGAGCTGGACTGCAAGCTGTATCCGTATGCTA GCATCCTGGACAAGCTCATGTTCCTGGCGGGGATGACTCGGCCCGACCTG GCCAGCAGCGTGTGGGAGCTCGGGTGCCGTGCAGCGTCCCCGTGCATGAG ACACTGGCGTGGACCGCAACATGTGCTGCTGTATCTCGCCGGAACACAGG ATGTGTGCATCCACTACGCGGTCAACACAGACAGCAACGACGAGCAAGTC CTCATCGGCTACTCGGACTCCGACTGGGGCAACGACATCGAAACGCGGCG GAGTGTGACGGGGTACATC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:1660730..1661648+

>mRNA_S-ischiensis_contig8.19472.1 ID=mRNA_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig8:1660730..1661648+ (Schizocladia ischiensis KU_0333)
ATGGGCCGTCACTCCCTGGACTTCACCCAAGCATACCTGAACGCATCTCT
TCAAGAAGACATCCGGCTCGAGCTGCCGGACGGGAACATCGTCAAGGCGA
ACAAGGCGCTCTTCGGCTTGAAGCAATCTGCTCTTGAGTGGTACAAGGAA
CTACAGAGCACAGTCCTGGGGGAGGGCTGGAGCAGCAGCGCCAACGACGA
GTGTCTCTACTACCGCCGGAGCGAGGATGGGCGTGCTGCTGTACTACTGA
CGTATGTCGACGACACTGCCTTCACCGGCGACTACGGCGAGGAGATCAAT
AGAATGCGGGACACACTGCTGTCTATGTACGAGGGCCGAGACTTGGGCGT
GCCTGATCAACTGCTGGGAGTGCGGATTACCACGGACGAGACGGGAATCA
TTCTGGATCAGCAACTGTACACCAAGAGCATCGTCACCGAGGGCATGGGA
TCTCTGGACCTGTGGATCACAACTTCACCGCTCGACCTTGGCATGGACCT
GTCTGCGCGACGCGACGACGAGGAGGAGCTGGACTGCAAGCTGTATCCGT
ATGCTAGCATCCTGGACAAGCTCATGTTCCTGGCGGGGATGACTCGGCCC
GACCTGGCCAGCAGCGTGTGGGAGCTCGGGTGCCGTGCAGCGTCCCCGTG
CATGAGACACTGGCGTGGACCGCAACATGTGCTGCTGTATCTCGCCGGAA
CACAGGATGTGTGCATCCACTACGCGGTCAACACAGACAGCAACGACGAG
CAAGTCCTCATCGGCTACTCGGACTCCGACTGGGGCAACGACATCGAAAC
GCGGCGGAGTGTGACGGGGTACATCATGGGCCGTCACTCCCTGGACTTCA
CCCAAGCATACCTGAACGCATCTCTTCAAGAAGACATCCGGCTCGAGCTG
CCGGACGGGAACATCGTCAAGGCGAACAAGGCGCTCTTCGGCTTGAAGCA
ATCTGCTCTTGAGTGGTACAAGGAACTACAGAGCACAGTCCTGGGGGAGG
GCTGGAGCAGCAGCGCCAACGACGAGTGTCTCTACTACCGCCGGAGCGAG
GATGGGCGTGCTGCTGTACTACTGACGTATGTCGACGACACTGCCTTCAC
CGGCGACTACGGCGAGGAGATCAATAGAATGCGGGACACACTGCTGTCTA
TGTACGAGGGCCGAGACTTGGGCGTGCCTGATCAACTGCTGGGAGTGCGG
ATTACCACGGACGAGACGGGAATCATTCTGGATCAGCAACTGTACACCAA
GAGCATCGTCACCGAGGGCATGGGATCTCTGGACCTGTGGATCACAACTT
CACCGCTCGACCTTGGCATGGACCTGTCTGCGCGACGCGACGACGAGGAG
GAGCTGGACTGCAAGCTGTATCCGTATGCTAGCATCCTGGACAAGCTCAT
GTTCCTGGCGGGGATGACTCGGCCCGACCTGGCCAGCAGCGTGTGGGAGC
TCGGGTGCCGTGCAGCGTCCCCGTGCATGAGACACTGGCGTGGACCGCAA
CATGTGCTGCTGTATCTCGCCGGAACACAGGATGTGTGCATCCACTACGC
GGTCAACACAGACAGCAACGACGAGCAAGTCCTCATCGGCTACTCGGACT
CCGACTGGGGCAACGACATCGAAACGCGGCGGAGTGTGACGGGGTACATC
back to top