mRNA_S-ischiensis_contig8.19472.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB) HSP 1 Score: 163 bits (413), Expect = 1.700e-41 Identity = 103/280 (36.79%), Postives = 152/280 (54.29%), Query Frame = 2
Query: 104 HSLDFTQAYLNASLQEDIRLELPDGNI-------VKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRR-SEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTE-GMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGY 916
H++DF+ A+LN +L+E++ ++ P+G + K K+L+GLKQ+ W+ L + +G+ S D CLYY SE LL YVDD A E N + S Y+ RDLG + LG+ IT TGI L Q+ +V + GM + + + P+ G L+ + +D E LD YPYA+++ L++LA TRPD+A V L A+P M HW + VL YLAGT ++Y+ S+ LIGY+DSD+ D +TRRS G+
Sbjct: 948 HNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAKYGMENSNGRLL--PMSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHAAKGVLRYLAGTSTYGLNYSKAGSSS---TLIGYTDSDFAGDADTRRSTAGF 1221
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A182GNA3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNA3_AEDAL) HSP 1 Score: 157 bits (397), Expect = 2.500e-41 Identity = 98/291 (33.68%), Postives = 160/291 (54.98%), Query Frame = 2
Query: 86 ASRMGR--HSLDFTQAYLNASLQ-EDIRLE------LPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLD----LGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
A+R+G H LD A+L L E+I +E +P G + + KAL+GLKQ++ W K+L + + G S D C+Y+ D + ++ YVDD + E ++ ++ L+ ++ +DLG +Q+LG+R+T + I LDQ+ Y + ++ E G D ++P D L ++S + D+ E + P+ ++ L F+A TRPD+A +V + ++P HW + +L YL GT+D+ + Y+ S E+ GYSD+DWGND ETRRSVTGY+
Sbjct: 4 AARLGLKIHQLDAVTAFLQGDLMDEEIYVEQPEGFAIPGGQVCRLKKALYGLKQASRVWNKKLDNVLREIGLQQSKMDSCVYFLIDGD-KILIVAVYVDDMLVFANDDEIVDALKQQLMVRFQMKDLGYAEQILGMRVTQVDGRITLDQEKYIEQLL-ERFGMNDCNPVSTPFDASQKLSKEMSPKSPDDVERMANV-PFRELVGGLQFVAQCTRPDIAFAVNAVSSFNSNPGEAHWTAAKRILRYLKGTKDMKLIYS----SESEESFHGYSDADWGNDPETRRSVTGYV 287
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060SQS6_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQS6_PYCCI) HSP 1 Score: 149 bits (377), Expect = 1.770e-38 Identity = 89/281 (31.67%), Postives = 152/281 (54.09%), Query Frame = 2
Query: 110 LDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
+D A+LN L+E+I +E P+G +V+ KA++GLKQ++ +W ++ ++L G++ + +D +Y YRR + +++ YVDD GD + I +++D L Y+ DLG + LG+RI+ D T I +DQ+ Y +S++ E D +PL G L + + + D Y S++ L++ A TRPD+ +V +L ++P HW ++VL YL GT+ + + Y D L+ YSDSDW D + R+S+TG++
Sbjct: 1 MDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVTIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKRFLGLRISHDRTIRRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPKPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 276
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A8J6HPC5_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPC5_TENMO) HSP 1 Score: 154 bits (390), Expect = 1.870e-38 Identity = 92/277 (33.21%), Postives = 150/277 (54.15%), Query Frame = 2
Query: 104 HSLDFTQAYLNASLQEDIRLELPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRIT--TDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSAR---RDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
H LDFT AYLN ++E++ +E+P + KAL+GLKQS + YK+L + + +D C+Y + EDG +++ YVDD D +++ R++ L +E +DLG LG+ T ++ I + Q Y K I++ +TT P++L LS + +EE+ +L P+ S++ LM+LA TRPD+A +V L + +HWR + +L YL T+++ + + Q L+GY+D+DWG I+ RRS TGY+
Sbjct: 733 HQLDFTSAYLNGEIEEEVFMEVPRNKVCLIRKALYGLKQSGRQGYKKLDEKLKQQKLKPLNSDPCVYINK-EDGNIVIVVIYVDDLMVASDNPKKLQRLKLELSKSFEMKDLGPLSFCLGIEFTQNVEKQTITMSQSKYIKEILSRFNMENCKGVTT-PINLNEKLSKEMCPKTEEEKKPVELLPHQSLVGSLMYLAVSTRPDIAHAVSMLSQFNTNFGEQHWRAAKRILRYLKNTENLGLMF-----KKSGQELVGYADADWGASIDDRRSYTGYV 1002
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A1Y1KL90_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KL90_PHOPY) HSP 1 Score: 153 bits (387), Expect = 2.190e-38 Identity = 100/281 (35.59%), Postives = 157/281 (55.87%), Query Frame = 2
Query: 101 RHSLDFTQAYLNASLQEDIRLELPDG-------NIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDT-AFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
RH LD A+LN L+E++ + P+G + K KA++GLKQS+ W +++ ++ + S + CLY ++ E+G V+ YVDD FT D EE N + + L S ++ ++LG Q LG+RI DE I +DQ+ Y +I+ + LD +PL+ G+ LS +D D L PY ++ LM++A MTRPD+A +V L HW+ + VL YL GT+ HY++ + DE L+G++D+DWG+D + R+S TGY+
Sbjct: 347 RH-LDVKTAFLNGLLKENVFMMQPEGFVSDDKNKVFKLKKAVYGLKQSSRAWNEKVDQVLIDIAYRKSDYEPCLYTKKRENGMLTVVALYVDDFFVFTND-SEEYNFLENQLSSHFKIKNLGEARQCLGIRIVRDENCITIDQESYIVAIL-KRFNMLDCKSVCTPLENGIKLSKVKD--HTCDVSL-PYKELIGSLMYVAVMTRPDIAFAVSLLSQYNNCYTKIHWQNAKRVLRYLNGTK----HYSMKF-TKDESNLVGFADADWGSDEKDRKSYTGYV 616
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: B1N668_SOLLC (Copia LTR rider n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=B1N668_SOLLC) HSP 1 Score: 154 bits (388), Expect = 3.570e-38 Identity = 94/282 (33.33%), Postives = 150/282 (53.19%), Query Frame = 2
Query: 110 LDFTQAYLNASLQEDIRLELPDG--------NIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETG--IILDQQLYTKSIVTE-GMGSLDLWITTSPLDLGMD-LSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
LD A+L+ L+E+I + PDG ++ K K+L+GLKQS +WYK S ++ G++ S+ D C+YY R D L+ YVDD +I +++ L + +E +DLG ++LG+ I D + L Q+ Y + ++ GM S T S ++ + + A + +EE+ PYAS + LM+ TRPDLA +V + P HW+ + + YL GT DV + Y +T + ++ GYSDSD+ D++TRRS+TGY+
Sbjct: 902 LDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDT----QCLVTGYSDSDYAGDVDTRRSMTGYV 1179
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060SJL7_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJL7_PYCCI) HSP 1 Score: 153 bits (386), Expect = 4.290e-38 Identity = 93/294 (31.63%), Postives = 154/294 (52.38%), Query Frame = 2
Query: 71 LGHCCASRMGRHSLDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
L H S+D A+LN L+E+I +E P+G +V+ KA++GLKQ++ +W ++ ++L G++ + +D +Y YRR + +++ YVDD GD + I +++D L Y+ DLG LG+RI+ D T I +DQ+ Y +S++ E D +PL G L + + E D Y S++ L++ A TRPD+ +V +L ++P HW ++VL YL GT+ + + Y D L+ YSDSDW D + R+S+TG++
Sbjct: 345 LAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKQASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVTIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKCFLGLRISRDRTIRRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPEPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 633
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU) HSP 1 Score: 153 bits (386), Expect = 6.810e-38 Identity = 89/283 (31.45%), Postives = 152/283 (53.71%), Query Frame = 2
Query: 110 LDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTD--ETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRD---DEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
+D A+L+ L+E+I ++ PDG +V+ K+L+GLKQ+ +WYK+ +S + +G+ + +D C++ ++ + +LL YVDD G INR++ L + +D+G Q+LG+RI D E + L Q+ Y K ++ + + + ++PL LS ++ + E+ D + PYAS + LM+ TRPD+A V + ++P HW + +L YL GT C+ D+ L+GY+DSD G DI++RRS +GY+
Sbjct: 865 MDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVL-QRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGT--TCLRLCFG---GDKPTLVGYTDSDMGGDIDSRRSTSGYV 1141
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A6A3HC77_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HC77_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.380e-37 Identity = 87/275 (31.64%), Postives = 146/275 (53.09%), Query Frame = 2
Query: 113 DFTQAYLNASLQEDI------RLELPDGNIVKANKALFGLKQSALEWYKELQSTVLGEGWSSSANDECLYYRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDETGIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
D AYLNA L+ R P G + + + AL+GL QS EWY+E+ ++ +G+ ++ + CLY R +DG A++ YVDD + + ++ Y +D G+ ++ LGV+I E+GI++ Q Y K ++ + G + + SP++ + + E+ D + Y + + LM+L TRPD+A V L ++P +H + +L YLA T I Y+ + D D+ ++ G+SD+DWGND ETR+SVTG++
Sbjct: 22 DINTAYLNALLKIKQFVRGIPRFPWPKGKVYRVDHALYGLHQSGAEWYEEVDKFLISQGYDNTETEPCLYVRY-KDGVLALIPLYVDDVVLATNSEDYKTKLFLEFDKKYGFKDGGLANKFLGVQIEQSESGILIHQDQYCKEVL-DRFGYGEAHGSASPMETNVKFKPNEESEKNEDIS-FDYRAAIGSLMYLTTSTRPDIAFPVGYLSRFVSNPSKKHGGAVKRILRYLAATSRQGIKYSNDKDVTDQILVSGHSDADWGNDPETRKSVTGFV 293
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Match: A0A060S2N0_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S2N0_PYCCI) HSP 1 Score: 152 bits (383), Expect = 1.550e-37 Identity = 92/294 (31.29%), Postives = 154/294 (52.38%), Query Frame = 2
Query: 71 LGHCCASRMGRHSLDFTQAYLNASLQEDIRLELPDGNIVKAN--------KALFGLKQSALEWYKELQSTVLGEGWSSSANDECLY-YRRSEDGRAAVLLTYVDDTAFTGDYGEEINRMRDTLLSMYEGRDLGVPDQLLGVRITTDET--GIILDQQLYTKSIVTEGMGSLDLWITTSPLDLGMDLSARRDDEEELDCKLYPYASILDKLMFLAGMTRPDLASSVWELGCRAASPCMRHWRGPQHVLLYLAGTQDVCIHYAVNTDSNDEQVLIGYSDSDWGNDIETRRSVTGYI 919
L H S+D A+LN L+E+I +E P+G +V+ KA++GLK ++ +W ++ ++L G++ + +D +Y YRR + +++ YVDD GD + I +++D L Y+ DLG + LG+RI+ D T I +DQ+ Y +S++ E D +PL G L + + E D Y S++ L++ A TRPD+ +V +L ++P HW ++VL YL GT+ + + Y D L+ YSDSDW D + R+S+TG++
Sbjct: 607 LAHAALEDWDIESMDVKTAFLNGDLEEEIYMEQPEGWVVRGKEDYVCLLKKAIYGLKPASRQWNLKIHKSLLDLGFTRTYSDAGVYVYRRQGGDKVMIVVLYVDDLLLLGDDRKHIKQIKDALKKQYKMTDLGAVKRFLGLRISCDRTIHRIEIDQEEYIQSVI-ERFDMADCKPARTPLPAGAVLESSKQPEPASDSFRQRYQSLIGSLLYAALGTRPDIDFAVNKLSKYNSNPSEAHWHYAKYVLRYLQGTKQLRLRY----DGASNDGLLSYSDSDWAEDRDDRKSITGFV 895 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19472.1 >prot_S-ischiensis_contig8.19472.1 ID=prot_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp MGRHSLDFTQAYLNASLQEDIRLELPDGNIVKANKALFGLKQSALEWYKEback to top mRNA from alignment at S-ischiensis_contig8:1660730..1661648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19472.1 ID=mRNA_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=919bp|location=Sequence derived from alignment at S-ischiensis_contig8:1660730..1661648+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1660730..1661648+ >mRNA_S-ischiensis_contig8.19472.1 ID=mRNA_S-ischiensis_contig8.19472.1|Name=mRNA_S-ischiensis_contig8.19472.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig8:1660730..1661648+ (Schizocladia ischiensis KU_0333)back to top |