mRNA_S-ischiensis_contig8.19466.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.340e-67 Identity = 110/121 (90.91%), Postives = 118/121 (97.52%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSKK 378
GKGKGGRG KKSTTRSAKAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK+ KK
Sbjct: 3 GKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC) HSP 1 Score: 208 bits (530), Expect = 1.520e-67 Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 1 MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKS 369
MSGKG KGKGGRGDKKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKKS
Sbjct: 1 MSGKG-KGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKKS 122
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.900e-67 Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 375
GKGKGGRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKKS K
Sbjct: 3 GKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 207 bits (528), Expect = 2.700e-67 Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 375
GKGKGGRG KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKS+K
Sbjct: 3 GKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: A0A6U3UCP9_9STRA (Histone H2A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UCP9_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.320e-66 Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 375
GKGK GRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKSRI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKSSK
Sbjct: 30 GKGKEGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSSK 149
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.810e-66 Identity = 107/127 (84.25%), Postives = 119/127 (93.70%), Query Frame = 1
Query: 1 MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSKKA 381
M GKG KGKGGRGDKK+ ++SAKAGLQFPVGR+GR+LKQGRY+ RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKKSRIIPRHIQLAVRNDEELNKLLG VTIA+GGVLPNIHAVLLPKK+ K+
Sbjct: 1 MGGKG-KGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKS 126
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 205 bits (522), Expect = 3.390e-66 Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSS 372
GKGKGGRG KKST++S+KAGLQFPV RIGRYLK+G+Y+TRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKSS
Sbjct: 3 GKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 120
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 206 bits (525), Expect = 4.520e-66 Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 375
GKGKGGRG KKSTTRSAKAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct: 48 GKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.730e-65 Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSS 372
GKGKGGRG KKST++S+KAGLQFPV RIGRYLK+G+Y+TRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKSS
Sbjct: 54 GKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 171
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Match: K0S6I8_THAOC (Uncharacterized protein n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6I8_THAOC) HSP 1 Score: 207 bits (528), Expect = 1.520e-64 Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 16 GKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGTVTIASGGVLPNIHAVLLPKKSSK 375
GKGKGGRG+KKSTT SAKAGLQFPVGRIGRYL+QG+Y+TR+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIIPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKKS K
Sbjct: 3 GKGKGGRGEKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKARIIPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSGK 122 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19466.1 >prot_S-ischiensis_contig8.19466.1 ID=prot_S-ischiensis_contig8.19466.1|Name=mRNA_S-ischiensis_contig8.19466.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp MSGKGGKGKGGRGDKKSTTRSAKAGLQFPVGRIGRYLKQGRYSTRVGAGAback to top mRNA from alignment at S-ischiensis_contig8:1641283..1641666+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19466.1 ID=mRNA_S-ischiensis_contig8.19466.1|Name=mRNA_S-ischiensis_contig8.19466.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=384bp|location=Sequence derived from alignment at S-ischiensis_contig8:1641283..1641666+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1641283..1641666+ >mRNA_S-ischiensis_contig8.19466.1 ID=mRNA_S-ischiensis_contig8.19466.1|Name=mRNA_S-ischiensis_contig8.19466.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig8:1641283..1641666+ (Schizocladia ischiensis KU_0333)back to top |