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Homology
BLAST of mRNA_S-ischiensis_contig8.19433.1 vs. uniprot
Match: A0A6H5KKU1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU1_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.930e-26 Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2
Query: 2 RLHAANGMFWGGNAIRLRLDGEIAVPLGFALRWLNSLTQRGGAYYPLPDLVQCDLGESQAGTLGVACGHWQTQL 223
RL+AA MFWGG AIRLR++ E+AVPLGFA+RWL SLT RGG YYP D V CD+ ES G L VAC HW T L
Sbjct: 276 RLYAAANMFWGGQAIRLRVEMEVAVPLGFAMRWLASLTARGGVYYPYSDTVPCDMVESSNGALSVACSHWTTNL 349
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 106.3 |
| Seed ortholog evalue | 5.6e-21 |
| Seed eggNOG ortholog | 2880.D8LNH7 |
| KEGG rclass | RC00002,RC00078 |
| KEGG ko | ko:K00914,ko:K04679 |
| KEGG Reaction | R03362 |
| KEGG Pathway | ko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04144,ko04145,ko04350,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04144,map04145,map04350,map04371,map05152,map05167 |
| GOs | GO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981 |
| EggNOG free text desc. | 1-phosphatidylinositol binding |
| EggNOG OGs | COG5032@1,KOG0906@2759,KOG1841@1,KOG1841@2759 |
| EC | 2.7.1.137 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01009,ko04131 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 225 |
| Cds size | 201 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817281.2493074-CDS-S-ischiensis_contig8:1412372..1412438 | 1622817281.2493074-CDS-S-ischiensis_contig8:1412372..1412438 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1412373..1412438 - |
| 1695740992.693355-CDS-S-ischiensis_contig8:1412372..1412438 | 1695740992.693355-CDS-S-ischiensis_contig8:1412372..1412438 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1412373..1412438 - |
| 1622817281.2609625-CDS-S-ischiensis_contig8:1413034..1413169 | 1622817281.2609625-CDS-S-ischiensis_contig8:1413034..1413169 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1413035..1413169 - |
| 1695740992.7098763-CDS-S-ischiensis_contig8:1413034..1413169 | 1695740992.7098763-CDS-S-ischiensis_contig8:1413034..1413169 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 1413035..1413169 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817281.2732115-UTR-S-ischiensis_contig8:1413169..1413191 | 1622817281.2732115-UTR-S-ischiensis_contig8:1413169..1413191 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 1413170..1413191 - |
| 1695740992.7268174-UTR-S-ischiensis_contig8:1413169..1413191 | 1695740992.7268174-UTR-S-ischiensis_contig8:1413169..1413191 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 1413170..1413191 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19433.1 >prot_S-ischiensis_contig8.19433.1 ID=prot_S-ischiensis_contig8.19433.1|Name=mRNA_S-ischiensis_contig8.19433.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
MFWGGNAIRLRLDGEIAVPLGFALRWLNSLTQRGGAYYPLPDLVQCDLGE
SQAGTLGVACGHWQTQL back to topmRNA from alignment at S-ischiensis_contig8:1412373..1413191- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19433.1 ID=mRNA_S-ischiensis_contig8.19433.1|Name=mRNA_S-ischiensis_contig8.19433.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=819bp|location=Sequence derived from alignment at S-ischiensis_contig8:1412373..1413191- (Schizocladia ischiensis KU_0333)
CAGGCTGCACGCGGCCAACGGCATGTTCTGGGGCGGCAACGCCATCCGCC
TGCGCCTGGACGGCGAGATCGCGGTGCCGCTGGGGTTTGCCCTGCGCTGG
CTCAACTCCCTCACCCAGCGGGGCGGGGCGTACTACCCGCTCCCGGACCT
GGTGCAGGTGGGTGGGGTGGGCACGCGTCACATCACATCACATCACATCA
GATCGCATCGCATCACATCACGTCCCCTAGATTGCATCATTCATGTGATG
TGTTGTGATGTGATGCCATGTGTGTACTGTAGTGTCCAGGGGTCTGATAT
CACATCACATTGCATCGCATCACGTCCCCTAGATCGCATCATTGATGTGA
TGCGATGCGATGCGATGCGTGTACGGTCGTGTCCAGTTATTCAGCATAAT
GGCAGTTCTGTTTAGTGTCTGTCCACTCCTACGAATGCAAGTGCTCCATC
ACTGCAGTAATGTGCTGCTCTTTGGAACGCGTCTTGTACAACAGCAGAGC
AGTGTGACCTTCACCCGGTGTTCCTCCCCTCGCCCATCCCGCTCGATGGC
TGACTTTTGGTGCCCCCCCCGCCCCCCCCGGCGGTGGCGGATGCTGCCTG
CTGCTGCCGCTCTCCCCCGCTGCTCGCTGCTGCTGCTGCTGCTGCTGCTT
CTGCTTTTACTGCTATTTCCTCCACTGCTCGCTGCTGCTGCTGCTTCTGC
TTTTACTGCTACGGCCGACACTGCGGCTGCGGTGGCGGCGGCGGCGGCGG
CAGTGTGACTTGGGGGAGTCGCAAGCGGGGACCCTTGGGGTGGCGTGCGG
GCACTGGCAGACACAGCTG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:1412373..1413191- >mRNA_S-ischiensis_contig8.19433.1 ID=mRNA_S-ischiensis_contig8.19433.1|Name=mRNA_S-ischiensis_contig8.19433.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig8:1412373..1413191- (Schizocladia ischiensis KU_0333)
ATGTTCTGGGGCGGCAACGCCATCCGCCTGCGCCTGGACGGCGAGATCGC
GGTGCCGCTGGGGTTTGCCCTGCGCTGGCTCAACTCCCTCACCCAGCGGG
GCGGGGCGTACTACCCGCTCCCGGACCTGGTGCAGATGTTCTGGGGCGGC
AACGCCATCCGCCTGCGCCTGGACGGCGAGATCGCGGTGCCGCTGGGGTT
TGCCCTGCGCTGGCTCAACTCCCTCACCCAGCGGGGCGGGGCGTACTACC
CGCTCCCGGACCTGGTGCAGTGTGACTTGGGGGAGTCGCAAGCGGGGACC
CTTGGGGTGGCGTGCGGGCACTGGCAGACACAGCTGTGTGACTTGGGGGA
GTCGCAAGCGGGGACCCTTGGGGTGGCGTGCGGGCACTGGCAGACACAGC
TG back to top
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