mRNA_S-ischiensis_contig8.19427.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19427.1
Unique NamemRNA_S-ischiensis_contig8.19427.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19427.1 vs. uniprot
Match: A0A8J2X1Z7_9STRA (RAB6-interacting golgin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1Z7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.330e-16
Identity = 51/114 (44.74%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:   34 KELEVRETLKSKKLSLQQEARRLALVDKELAQLVQEYQAEINELRKSLEVVDXDLPFLDRDCKRKKEAYEKAQAALDKRREEKKGITDKLTQLILTSERRKDQKLNELMAKIAS 375
            KE ++++ L S++  +++EA RLAL + ELA+L ++  A++ +LR  LE  D DL +L+RD K K+ AY KA+ A +     K+ I + +T L+L+SERRK++KLNELMAK++S
Sbjct:  106 KERQIKQNLSSQRERVKKEAARLALFEGELAKLKEKEAADVADLRYQLEEADRDLVWLERDFKTKEAAYVKAKEAFETAAGRKREIKESMTLLVLSSERRKEEKLNELMAKMSS 219
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BLAST of mRNA_S-ischiensis_contig8.19427.1 vs. uniprot
Match: A0A7S3K3N0_9STRA (RAB6-interacting golgin n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3N0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.980e-11
Identity = 46/114 (40.35%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:   34 KELEVRETLKSKKLSLQQEARRLALVDKELAQLVQEYQAEINELRKSLEVVDXDLPFLDRDCKRKKEAYEKAQAALDKRREEKKGITDKLTQLILTSERRKDQKLNELMAKIAS 375
            KE +VR  L   +  +++E+ RLA V+ EL +L  + QA+I  LR  LE +D  L +L +D   K+ AY+K++ ALD     K+ + + L  ++L+SE+RK++KLNEL+A I S
Sbjct:  105 KETQVRTVLAEHQRRVREESERLAHVEIELRKLSAQEQADIGILRTQLEDIDRKLHWLQKDFNAKESAYKKSKEALDAMETRKRSMHEHLALMVLSSEKRKEEKLNELLANIDS 218
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BLAST of mRNA_S-ischiensis_contig8.19427.1 vs. uniprot
Match: A0A4D8ZWJ4_SALSN (RAB6-interacting golgin n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8ZWJ4_SALSN)

HSP 1 Score: 55.8 bits (133), Expect = 4.340e-7
Identity = 35/117 (29.91%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:   19 EKLAKKELEVRETLKSKKLSLQQEARRLALVDKELAQLVQEYQAEINELRKSLEVVDXDLPFLDRDCKRKKEAYEKAQAALDKRREEKKGITDKLTQLILTSERRKDQKLNELMAKI 369
            E++ ++  E+RE L+++   +++EA+RL L+  EL  +    + E+  + K +E+V+ D+  L  +C++K++ Y ++  A D++++EK  +  KL +L+  SE+ +  KL EL   I
Sbjct:   52 EEIERRRSEIRERLQAQFTRVEEEAKRLHLIQSELDSVTDPMRKEVAAICKKVEIVNRDVKILGINCQKKEKEYRESAEAFDEKKKEKAQLLAKLAELVSESEKLRSSKLEELCKNI 168
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BLAST of mRNA_S-ischiensis_contig8.19427.1 vs. uniprot
Match: A0A804K8D9_MUSAM (RAB6-interacting golgin n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K8D9_MUSAM)

HSP 1 Score: 55.1 bits (131), Expect = 9.380e-7
Identity = 35/113 (30.97%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   19 EKLAKKELEVRETLKSKKLSLQQEARRLALVDKELAQLVQEYQAEINELRKSLEVVDXDLPFLDRDCKRKKEAYEKAQAALDKRREEKKGITDKLTQLILTSERRKDQKLNEL 357
            E++ +K++EVRE + ++   +++E++RLA++ KEL  +    + E++ +RK ++ V+ +L  L  +C +K++ Y++A  A + +  EK  + ++L +L+  SER + +KL EL
Sbjct:   55 EEIERKKMEVREKVFAQLGRVEEESKRLAVIQKELEAIADPTRKEVSAIRKKIDAVNRELKPLGHNCLKKEKEYKEALEAFNGKNREKAQLVNRLIELVSESERLRMKKLEEL 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8J2X1Z7_9STRA3.330e-1644.74RAB6-interacting golgin n=1 Tax=Pelagomonas calceo... [more]
A0A7S3K3N0_9STRA2.980e-1140.35RAB6-interacting golgin n=1 Tax=Aureoumbra lagunen... [more]
A0A4D8ZWJ4_SALSN4.340e-729.91RAB6-interacting golgin n=3 Tax=Salvia TaxID=21880... [more]
A0A804K8D9_MUSAM9.380e-730.97RAB6-interacting golgin n=2 Tax=Musa acuminata sub... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1379023..1382263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue4.7e-08
Seed eggNOG ortholog29760.VIT_08s0007g03770.t01
KEGG koko:K19748
KEGG Pathwayko04115,map04115
EggNOG free text desc.isoform X1
EggNOG OGs29UFX@1,2RXIM@2759,37TX1@33090,3GI1Q@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004000.1
Exons3
Model size384
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19427.1prot_S-ischiensis_contig8.19427.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1379023..1382261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.1848395-CDS-S-ischiensis_contig8:1379022..13791091622817258.1848395-CDS-S-ischiensis_contig8:1379022..1379109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1379023..1379109 +
1695740975.3568912-CDS-S-ischiensis_contig8:1379022..13791091695740975.3568912-CDS-S-ischiensis_contig8:1379022..1379109Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1379023..1379109 +
1622817258.200309-CDS-S-ischiensis_contig8:1380809..13808951622817258.200309-CDS-S-ischiensis_contig8:1380809..1380895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1380810..1380895 +
1695740975.3719056-CDS-S-ischiensis_contig8:1380809..13808951695740975.3719056-CDS-S-ischiensis_contig8:1380809..1380895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1380810..1380895 +
1622817258.2128525-CDS-S-ischiensis_contig8:1382053..13822611622817258.2128525-CDS-S-ischiensis_contig8:1382053..1382261Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1382054..1382261 +
1695740975.3817074-CDS-S-ischiensis_contig8:1382053..13822611695740975.3817074-CDS-S-ischiensis_contig8:1382053..1382261Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1382054..1382261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19427.1

>prot_S-ischiensis_contig8.19427.1 ID=prot_S-ischiensis_contig8.19427.1|Name=mRNA_S-ischiensis_contig8.19427.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
AEAAAKEKLAKKELEVRETLKSKKLSLQQEARRLALVDKELAQLVQEYQA
EINELRKSLEVVDKDLPFLDRDCKRKKEAYEKAQAALDKRREEKKGITDK
LTQLILTSERRKDQKLNELMAKIASAT
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mRNA from alignment at S-ischiensis_contig8:1379023..1382263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19427.1 ID=mRNA_S-ischiensis_contig8.19427.1|Name=mRNA_S-ischiensis_contig8.19427.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3241bp|location=Sequence derived from alignment at S-ischiensis_contig8:1379023..1382263+ (Schizocladia ischiensis KU_0333)
GCAGAGGCGGCAGCGAAGGAGAAGCTGGCGAAGAAGGAGCTAGAAGTGCG
GGAGACGCTCAAGTCAAAAAAACTGAGCCTCCAGCAGGTAGGTCCCGCCT
CCCACCCGGGGTTGGCACTTAGAGGATAATTAGGGCCTAATTAGCCATTT
TAGGTCTAATTGGCCTTCATTTGAGGTCTAACTAGCCCTCATTTGAGGTA
TAATTACCCCTAACTACCTCTAAGTAAGTGCCTAAAAGAGCGCCACTTAG
GGGTTAAGTGCCAACCCTGCTCCCACCCGCCAGTCTTCCCCCAACTGCGG
CCTGCCCTCGAAAGGGAGCGAGCGGGCTCGGGCCGGTCCGTCTGTAAAGG
GGTCGAAAGGGCGTGTGTTGTCCTTCCGTGCTTGTGCATTTTCCGGCCCG
CGCGGGGCACGGGTCGACGGCAACTGCAGAGATCCGGGAGGTACTGCTGC
TGTGGTACGAGTACTCTACTCCGCCAAGCTTAAGTACTTTTGGGCATGCG
CGATCGGTGGTATGCACTGGATACGGGGTAACCCTGTCCGACATGAGTAA
GATACTGTGTGCTATAGTGCTGGAGAACAGTGCAGCGGTATTGCGGTGCT
GCTCTAGAGAGTACTTCGAAGTACTTGAATGCACGTTGACGCAGAGTACT
CGCAAGCACCTTCAAGTAGAGCTGTAAGGAGGGCAGTACCTACAGTCGGC
GGCGTTGTTGCCCTGTCTGCGGGCTGTCCGCCGCCGCCGCACTCCATGCA
AAGGCGGGAAGGCCGCCGCTGCTGAGTGCAGAGCGCGTACGTACACGTAC
TCGAGCAAGCGTGTCGGTGCTTGGAAGTACTGTTCACTGTGGTGCAGTGC
TTGGGTGGTCCGAAGTGCTCGAGTAGTACCTACACCTGCGGCACCTCGGT
AAGTTACCACTTTTAACTTTCCTTGACGTACGGGAGTGGTATCTGATGCA
TGCTGCAGCAAGCACGGGTGCTGTAGTTGCGATTGGCAGTACATATGTAT
ATGTACTCATTGGCTTGTCTTGCGACATAACCGGGCGTGCAATGCCGACA
GCCCTAAGTCGAAACTTCGGGTTTGCCCTCTGACAGGAGTAGCTGTTTAG
CCATGGACTCTCAGTGCATACAGTAGTAAAGGCATGCTCCGTCCCGGCGT
AGTAGGGATCGGGGCCAATAGCCGAAAGGCTACGCTGTACCCTGCGGGGG
GCTGATCGGTGGTCCGGCACGGAGTGTGCTGGGCCGGCGTAGTATATGCA
TGTATATAGAATGGCAGTACAAGTAGGTGTGGGCAACCATGGGCAACCAT
CCGCTAAGGCAACACCGGCCACAATTAGAAGTGCTCTTACAAGCAGTGTA
CCTTGGAAGTGCACTCAGTAGCGACACACGTACGTTCTTACTTCGAAGGA
CTCGAATAGAGTAGTGCAGCGCAGTGCTTTGAAGCGAGGACTGTGCTGTA
GTACTCGTACAGTAGTACGATCCTCCTGAAGTACTTGTAAATAGTGCTGT
ACAGCAACTGCTGGGCACTCGGTGGAGCACCCGCGGCACAGACAAGTACA
ACGCCGTGTTTGAGTATGCTGTAGAGCTCGTCTCAGGGCATTGCTCTTTT
GCTATATCCCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTGCGTC
TCCCCCCCTTTCCCACTGCTCTCCCTCTCCGCCCACGTGTCTTCCCTCTC
CCCCCCCTCTGTTCTAGTCTCTCATTCTGTCTGTCTCCTTCTCGCTCTCC
CCCCCCTCTCTCTTCCCCCCTCCGCCCGTGTCTCCAGGAGGCGAGGCGAC
TGGCCCTGGTGGACAAGGAGCTGGCGCAGCTTGTGCAGGAGTATCAGGCG
GAGATCAACGAGCTCCGAAAGAGGCAAGCATGCCGTAGGAATCGAATCAC
CACATCAACCTGCGGTGCAATACTTGATGTACTTGGAAGTGCAAAAGCAG
CACATGCTCCATGTGCCACTGTGTTACCCCCGAAAACCAAGTACGAGTAC
AGCTTTGTACTGCTTCACTTCACTCGTTCCTCGCGCGTTCCTGTTGCGTT
CTCGTTGGCTTGCCCCCACCCCCCCCTCCAGCGCCTCCCACTTTCACTCC
GCATCTCTACAAGAGAGCCGTGACCCTGTGAGGCTTACATGGCCGAGTTT
GTTACTCAAAAGAGTCATTTGGTTTGGGGGACCGTTTTCTTCGGCTACAT
TCCCCCAGGCCGGGAGTAGCGTACCCCGTACCGGGGTTGTTTTCCGGGTT
TGTGCCAGTTGCGGGCGTGGCACCGGCACGAGAGGTTTCCCACCAACAAA
GGACCGTCGTAGTCTTGGAGGCGGTGGACAAAGACCATCTGTGTTGGCAT
GTGGACCTCTCCTTCTATCCCACCCCCCTCCCCTTTCTTCCTTTGCCCGC
ACCTACTCCCGCACCTCGTCTTATCCTCTGCCCACCCCACCCCCCCGCTT
CTTGTCCTCTGCTCCACCCCCACCGTCCCTGCCCCCGTCTCGCATCCTCT
GTCCCCACCTACTCCCACACCTCCTCTTGCCCTCTGCCCCCCCACCCACC
CCCCCGTCGCTTGTCCTCTGCTCCACCCCCACCGTCCCTGCCCCCGTCTC
GCATCCTCTGCCCCCACCTACTCCCACACCTCCTCTTGTCCTCTGCCCCG
CCCACCCCCCATCTCTTGTCGTCTGCTCCAACCCCACCGTCCCCGCCCCC
GTCTCGCATCCTCTGCCCCCGCCCTCCCCTCCCCCCCCCCCACACAAACA
CACACACAAAACAAACAGCCTTGTACTCCCACACCTCCTGTTATCCTCTG
CTCACCCCCCCCCCCCGTCTCTTACCCTCTGCTCCACCCCCACCGTCCCT
GCCCCCGTCTTGCTCGCATCCTCTGCCCCCCCACACACACACGCACAAAA
AAAAACTTGAAAATAATATATTCACTATTATAAGAACACTCAGTTCTTAA
ATGGGACAACTACTACTACGAGAACAGTCAAAATCTCACACACGTGCGAT
TGTACCTCGCTACAATTTATACGAATCACAGCCTTGAGGTTGTGGACAAG
GACCTCCCCTTCTTGGACCGGGACTGCAAGCGCAAGAAGGAGGCGTACGA
GAAGGCGCAGGCCGCGCTGGACAAGCGCCGGGAGGAGAAGAAGGGCATCA
CCGACAAGCTCACGCAGCTCATCCTCACCAGTGAGCGCCGCAAGGACCAG
AAGCTCAACGAGCTCATGGCCAAGATCGCCTCGGCCACCGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1379023..1382263+

>mRNA_S-ischiensis_contig8.19427.1 ID=mRNA_S-ischiensis_contig8.19427.1|Name=mRNA_S-ischiensis_contig8.19427.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig8:1379023..1382263+ (Schizocladia ischiensis KU_0333)
GCAGAGGCGGCAGCGAAGGAGAAGCTGGCGAAGAAGGAGCTAGAAGTGCG
GGAGACGCTCAAGTCAAAAAAACTGAGCCTCCAGCAGGCAGAGGCGGCAG
CGAAGGAGAAGCTGGCGAAGAAGGAGCTAGAAGTGCGGGAGACGCTCAAG
TCAAAAAAACTGAGCCTCCAGCAGGAGGCGAGGCGACTGGCCCTGGTGGA
CAAGGAGCTGGCGCAGCTTGTGCAGGAGTATCAGGCGGAGATCAACGAGC
TCCGAAAGAGGAGGCGAGGCGACTGGCCCTGGTGGACAAGGAGCTGGCGC
AGCTTGTGCAGGAGTATCAGGCGGAGATCAACGAGCTCCGAAAGAGCCTT
GAGGTTGTGGACAAGGACCTCCCCTTCTTGGACCGGGACTGCAAGCGCAA
GAAGGAGGCGTACGAGAAGGCGCAGGCCGCGCTGGACAAGCGCCGGGAGG
AGAAGAAGGGCATCACCGACAAGCTCACGCAGCTCATCCTCACCAGTGAG
CGCCGCAAGGACCAGAAGCTCAACGAGCTCATGGCCAAGATCGCCTCGGC
CACCCCTTGAGGTTGTGGACAAGGACCTCCCCTTCTTGGACCGGGACTGC
AAGCGCAAGAAGGAGGCGTACGAGAAGGCGCAGGCCGCGCTGGACAAGCG
CCGGGAGGAGAAGAAGGGCATCACCGACAAGCTCACGCAGCTCATCCTCA
CCAGTGAGCGCCGCAAGGACCAGAAGCTCAACGAGCTCATGGCCAAGATC
GCCTCGGCCACC
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