mRNA_S-ischiensis_contig8.19413.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19413.1
Unique NamemRNA_S-ischiensis_contig8.19413.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1265983..1266593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19413.1prot_S-ischiensis_contig8.19413.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1266235..1266552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.36945-UTR-S-ischiensis_contig8:1265982..12662341622817266.36945-UTR-S-ischiensis_contig8:1265982..1266234Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1265983..1266234 +
1695740980.8738742-UTR-S-ischiensis_contig8:1265982..12662341695740980.8738742-UTR-S-ischiensis_contig8:1265982..1266234Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1265983..1266234 +
1622817266.3939-UTR-S-ischiensis_contig8:1266552..12665931622817266.3939-UTR-S-ischiensis_contig8:1266552..1266593Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1266553..1266593 +
1695740980.9065804-UTR-S-ischiensis_contig8:1266552..12665931695740980.9065804-UTR-S-ischiensis_contig8:1266552..1266593Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1266553..1266593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.38199-CDS-S-ischiensis_contig8:1266234..12665521622817266.38199-CDS-S-ischiensis_contig8:1266234..1266552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1266235..1266552 +
1695740980.8947315-CDS-S-ischiensis_contig8:1266234..12665521695740980.8947315-CDS-S-ischiensis_contig8:1266234..1266552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1266235..1266552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19413.1

>prot_S-ischiensis_contig8.19413.1 ID=prot_S-ischiensis_contig8.19413.1|Name=mRNA_S-ischiensis_contig8.19413.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
MRQPLQGRLPRTRLHENLCKAKSGKPPPVRPCGSSRKGRAPPHQLPQDNV
TCLARITLSLSLLSLSTSPTPPSLPPEREKAVCARRRHLKSINKSINQND
QAINH*
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mRNA from alignment at S-ischiensis_contig8:1265983..1266593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19413.1 ID=mRNA_S-ischiensis_contig8.19413.1|Name=mRNA_S-ischiensis_contig8.19413.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=611bp|location=Sequence derived from alignment at S-ischiensis_contig8:1265983..1266593+ (Schizocladia ischiensis KU_0333)
GGACTGAGGAACTCTGTTGGAATCAATACTTGTACTTAGTTTACAAGTTG
TATTGCCTGGGTTCGGGGCCGCAGTAAAAAAACAACGGCCCAAAGAAGCA
AGAGCCCGCCTGCGGTCGAAACATGCCCACGACACTGGAAAACAAGAACA
CGAGGCATACCAATCCCCCCACAACACACAAGAGCGCGGGAGAGAGAAGA
GGAAGCGGACGGGGTCAGGCACCGCCAACACGACTGTCGTGACAAAACCG
GCATGCGTCAGCCGCTCCAAGGGCGGCTACCGCGCACGCGCCTTCACGAG
AATCTCTGTAAAGCAAAATCGGGAAAACCGCCTCCCGTCCGTCCGTGCGG
CTCGTCGCGAAAGGGCCGCGCCCCACCACACCAGCTTCCCCAAGACAACG
TCACGTGCCTCGCCCGCATCACTCTCTCGCTCTCCCTTCTCTCTCTGTCT
ACATCTCCCACACCCCCTTCTCTCCCCCCAGAGAGGGAGAAGGCAGTTTG
CGCGCGCCGCCGCCACCTCAAATCAATTAATAAATCGATCAATCAAAATG
ACCAAGCCATCAACCATTGAGCCAGCCTAAATCAGCTGACCCTAATCGGG
GCGGGCGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1265983..1266593+

>mRNA_S-ischiensis_contig8.19413.1 ID=mRNA_S-ischiensis_contig8.19413.1|Name=mRNA_S-ischiensis_contig8.19413.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:1265983..1266593+ (Schizocladia ischiensis KU_0333)
ATGCGTCAGCCGCTCCAAGGGCGGCTACCGCGCACGCGCCTTCACGAGAA
TCTCTGTAAAGCAAAATCGGGAAAACCGCCTCCCGTCCGTCCGTGCGGCT
CGTCGCGAAAGGGCCGCGCCCCACCACACCAGCTTCCCCAAGACAACGTC
ACGTGCCTCGCCCGCATCACTCTCTCGCTCTCCCTTCTCTCTCTGTCTAC
ATCTCCCACACCCCCTTCTCTCCCCCCAGAGAGGGAGAAGGCAGTTTGCG
CGCGCCGCCGCCACCTCAAATCAATTAATAAATCGATCAATCAAAATGAC
CAAGCCATCAACCATTGAATGCGTCAGCCGCTCCAAGGGCGGCTACCGCG
CACGCGCCTTCACGAGAATCTCTGTAAAGCAAAATCGGGAAAACCGCCTC
CCGTCCGTCCGTGCGGCTCGTCGCGAAAGGGCCGCGCCCCACCACACCAG
CTTCCCCAAGACAACGTCACGTGCCTCGCCCGCATCACTCTCTCGCTCTC
CCTTCTCTCTCTGTCTACATCTCCCACACCCCCTTCTCTCCCCCCAGAGA
GGGAGAAGGCAGTTTGCGCGCGCCGCCGCCACCTCAAATCAATTAATAAA
TCGATCAATCAAAATGACCAAGCCATCAACCATTGA
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