mRNA_S-ischiensis_contig8.19411.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19411.1
Unique NamemRNA_S-ischiensis_contig8.19411.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1255009..1256345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817258.0861783-CDS-S-ischiensis_contig8:1255008..12552361622817258.0861783-CDS-S-ischiensis_contig8:1255008..1255236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1255009..1255236 -
1695740975.309069-CDS-S-ischiensis_contig8:1255008..12552361695740975.309069-CDS-S-ischiensis_contig8:1255008..1255236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1255009..1255236 -
1622817258.0970986-CDS-S-ischiensis_contig8:1256126..12563451622817258.0970986-CDS-S-ischiensis_contig8:1256126..1256345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1256127..1256345 -
1695740975.322886-CDS-S-ischiensis_contig8:1256126..12563451695740975.322886-CDS-S-ischiensis_contig8:1256126..1256345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1256127..1256345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19411.1prot_S-ischiensis_contig8.19411.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1255009..1256345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19411.1

>prot_S-ischiensis_contig8.19411.1 ID=prot_S-ischiensis_contig8.19411.1|Name=mRNA_S-ischiensis_contig8.19411.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
GVGAEAGGELGGQARGTAAAALAVAGLALASEAAAAAPALTVAGSDGVSL
AAGLLATAAIEASLTKQIERLAQRCHTASRGLDGATVAPVTATAAHPANG
PGSSGSSSLTAAEAQGPRPRPGPALGLGLQQVTPPAAGTPDLGPGRGQG
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mRNA from alignment at S-ischiensis_contig8:1255009..1256345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19411.1 ID=mRNA_S-ischiensis_contig8.19411.1|Name=mRNA_S-ischiensis_contig8.19411.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1337bp|location=Sequence derived from alignment at S-ischiensis_contig8:1255009..1256345- (Schizocladia ischiensis KU_0333)
GGAGTCGGAGCAGAGGCCGGCGGAGAGCTGGGGGGGCAAGCACGGGGCAC
GGCGGCGGCAGCTTTGGCAGTGGCTGGTCTTGCGCTGGCGAGCGAGGCTG
CTGCTGCGGCACCGGCGTTGACGGTTGCGGGGTCGGATGGGGTGAGCCTT
GCGGCAGGGCTCTTAGCCACGGCCGCCATTGAAGCGTCACTGACCAAGCA
GATTGAAAGGCTGGCGCAGGTGAGTTGCGTGAAACATATGATGATGTTTT
GCGCCTGCGGGAGGATGCCACCTGCAGTTTTACGACGTAAGTGTGGTGCT
TGACAGGTGGTTCACTCACACGACGCCTGAGATTCTCTGTCGTATAGTAC
TCGTAGAGTATTTTGGTGCCATCGCCGTCCCAAGGGTGGGGCAGGTACGA
GAGAGTTGCTTTCGTGGGTGTAGGATTTTTGTTCTTGGGTGTGTGTGCAT
GTGCGTGTGTGTGTGCGTGCATGCGTGTGTGTGTGCGTGCGTGTGTGTGT
GTGCGTGCGCGTGCGTGCGTGTGCGTGTGTGCGTGTGCGTGCGTGCGTAT
GTGTGCGTGCTCGTGTGTGCGCGCGCGTGTGTGTCGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGGGCGTGTGTGCGTGCG
TGCATGCCTGCGTGCGCGTGCGTGCGTATGTGTGCGCGCTTGTGTGTGTG
TGCGTGTGTGTGTGCATTTGTGCGCCTGCATGTGTGTGTGAGTGTGTGCG
TGTGTGCATGCGTGGGTGTCGTATGGCATGTGTATACGTGTTTGCTCCAT
GGTACTTCCGGAAGTACTTAGTGTGTAGGATATTTGTCTCTCATGAGTGA
CTAGTGTCATGGTTAGTACCTACCTTTGCACCTGCTGCTCTGTACAGCAG
TACGCTCTGCGGCATTACAGTCCTTCCAGTAAGCAATTCCGAGCATCACA
AATGATCCTTCATGTCCACCGCTGCGCTGCACCCAAGAACAGCATTCGAA
CCAGCACACGCTGCCATCCCCCGCCCTTTCCCCCCCCCCGGCCACCTGGT
CTTTCCTCGTCTCCCCCATATACTGGATCACCGGCGACGGGATCCGTGTG
TGGTGCTAGCGGTGCCACACAGCTTCTCGTGGCCTGGACGGTGCCACGGT
GGCCCCGGTCACGGCCACTGCCGCACACCCTGCCAATGGGCCCGGCAGCA
GCGGCAGCAGCAGCCTCACTGCTGCGGAGGCCCAGGGGCCGAGGCCAAGG
CCGGGCCCAGCGCTGGGGCTGGGGCTGCAGCAGGTGACGCCTCCTGCAGC
GGGGACCCCAGATCTGGGACCGGGGCGGGGACAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1255009..1256345-

>mRNA_S-ischiensis_contig8.19411.1 ID=mRNA_S-ischiensis_contig8.19411.1|Name=mRNA_S-ischiensis_contig8.19411.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig8:1255009..1256345- (Schizocladia ischiensis KU_0333)
GGAGTCGGAGCAGAGGCCGGCGGAGAGCTGGGGGGGCAAGCACGGGGCAC
GGCGGCGGCAGCTTTGGCAGTGGCTGGTCTTGCGCTGGCGAGCGAGGCTG
CTGCTGCGGCACCGGCGTTGACGGTTGCGGGGTCGGATGGGGTGAGCCTT
GCGGCAGGGCTCTTAGCCACGGCCGCCATTGAAGCGTCACTGACCAAGCA
GATTGAAAGGCTGGCGCAGGGAGTCGGAGCAGAGGCCGGCGGAGAGCTGG
GGGGGCAAGCACGGGGCACGGCGGCGGCAGCTTTGGCAGTGGCTGGTCTT
GCGCTGGCGAGCGAGGCTGCTGCTGCGGCACCGGCGTTGACGGTTGCGGG
GTCGGATGGGGTGAGCCTTGCGGCAGGGCTCTTAGCCACGGCCGCCATTG
AAGCGTCACTGACCAAGCAGATTGAAAGGCTGGCGCAGCGGTGCCACACA
GCTTCTCGTGGCCTGGACGGTGCCACGGTGGCCCCGGTCACGGCCACTGC
CGCACACCCTGCCAATGGGCCCGGCAGCAGCGGCAGCAGCAGCCTCACTG
CTGCGGAGGCCCAGGGGCCGAGGCCAAGGCCGGGCCCAGCGCTGGGGCTG
GGGCTGCAGCAGGTGACGCCTCCTGCAGCGGGGACCCCAGATCTGGGACC
GGGGCGGGGACAGGGGCGGTGCCACACAGCTTCTCGTGGCCTGGACGGTG
CCACGGTGGCCCCGGTCACGGCCACTGCCGCACACCCTGCCAATGGGCCC
GGCAGCAGCGGCAGCAGCAGCCTCACTGCTGCGGAGGCCCAGGGGCCGAG
GCCAAGGCCGGGCCCAGCGCTGGGGCTGGGGCTGCAGCAGGTGACGCCTC
CTGCAGCGGGGACCCCAGATCTGGGACCGGGGCGGGGACAGGGG
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