mRNA_S-ischiensis_contig8.19408.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: D7G7B3_ECTSI (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B3_ECTSI) HSP 1 Score: 150 bits (379), Expect = 9.660e-39 Identity = 90/184 (48.91%), Postives = 111/184 (60.33%), Query Frame = 1
Query: 37 SAGYGEPRGSQGVRRAVAALMGGG----DEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALAAANVV-------PAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRPGATFQGLREVL 555
S GYGE RG VRR +A +MG D+ D D + +AAG T+V LL AL EEGE CLIP PYF GFD L A V PA G G VD GI P LE A R AR G++ R LL+TSPHNP+GR+Y+ +AL +AV+W R RGL V DE Y +C+HRP A+F+ + +L
Sbjct: 207 SMGYGEVRGPLWVRREIAEMMGRRMFHRDDV---DPDNVVIAAGATSVLRLLVVALTEEGEGCLIPGPYFPGFDKVLNIAGVRAWVANRDPAEGGGGVEGGVDDGIFPRVLETALRRARSSGVEIRVLLITSPHNPTGRMYSPKALLSAVSWGRRRGLQIVVDEVYANCIHRPNASFRSVGGLL 387
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A835YIK7_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK7_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.720e-23 Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 43 GYGEPRGSQGVRRAVAALMGGGDEWACP----DEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNAL-AAANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETY 501
GYG RGS +R +A LM CP D++ + AGV AV + + AL+E G+A LIP+PY+A F++ L A A P P PG + PA L+ AY +A RGL+P +LLT+PHNP GR Y+A L+ AV + R R LH ++DE Y
Sbjct: 48 GYGPMRGSPDLRAQIARLM---TARICPGVDIQPDELTLNAGVAAVLSNVALALLEPGDAALIPAPYYAAFNSDLRAVARCAAVPAPCAPPGYA---LTPAALQGAYDAAVARGLRPACVLLTNPHNPLGRCYSAAELQCAVQFCRLRSLHLISDEIY 199
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: M1V7C7_CYAM1 (1-aminocyclopropane-1-carboxylate synthase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V7C7_CYAM1) HSP 1 Score: 93.6 bits (231), Expect = 8.200e-19 Identity = 63/167 (37.72%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 64 SQGVRRAVAALMGGGDEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALAA-ANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRPGA-TFQGLREVLA 558
SQ R + A GG A ++ +C A G +AV L+F AL ++G+A LIP+PY+ GFD L+ A +P PV + + + LE A R+ R G +PR LLL SP NP+G + + L ++ W RS G+H V+DE Y V + A F+ + +VLA
Sbjct: 140 SQLFREHIFAASKGGPASAANPDNYLC-AVGASAVLDLVFSALCDDGDAVLIPAPYYPGFDFDLSCRAKCIPVPVQTALHNHHR--LTRDALETADRTCRASGQRPRVLLLHSPGNPTGNILSTEELELSIQWCRSHGMHLVSDEAYALSVFQSHAGRFRSVADVLA 303
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A1Z5J6Q1_FISSO (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6Q1_FISSO) HSP 1 Score: 92.8 bits (229), Expect = 1.500e-18 Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 151 AGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALAA-ANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRPGATFQGLREVL 555
AG + LF AL +ACLIP+PY+A F+N ++ A +VP V N AG A L+ AY A +G P+ +LL++P+NP G +Y A L+ V WARS+G+HT+ DE Y H+ FQ + VL
Sbjct: 163 AGAAPLLNSLFFALGNASDACLIPAPYYAAFENDMSVMAGIVPIAVKQN---NAVAGPTNAELDLAYSVAMTKGHTPKFVLLSNPNNPLGTIYRAEVLQRIVLWARSKGMHTIIDEIYALSTHQANHHFQSIIRVL 295
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A448ZGJ4_9STRA (Aminotran_1_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGJ4_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.320e-18 Identity = 56/141 (39.72%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 139 ICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALA-AANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRP-GATFQGLREVL 555
I + +G + LF L +EG+ACLIP+PY+A F++ L A VVP V P + G + L+ A+ A+ + L PR LL+T+P+NP G +Y++ +R AVAWAR R +HT+ DE Y HR G F+ + +L
Sbjct: 211 IGIGSGAAGILNALFFLLGDEGDACLIPAPYYAAFESDLRIVARVVPFAVHMADPAS---GPSASELDLAFIEAKSQRLNPRFLLITNPNNPLGVVYSSTIMRNAVAWARKRKVHTIVDEIYALSTHRRHGHGFESIISIL 348
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A7S2VYI4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYI4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.200e-17 Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 121 CPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALAA-ANVVPAPVPSGFPGNVDAGIGPAR--LEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCV-HRPGATFQGLREVL 555
C D + + + +G ++ + LF L EEG+A LIP+PY+A F++ + A A VP PV VD GP + LEKA AR++GL + LLLT+P NP G +Y+ + ++WARS+ +HT+ DE Y V + F + E+L
Sbjct: 113 CIDPEHVVIGSGGASLLSSLFYTLAEEGDAVLIPAPYYAVFESDMKAIAKCVPFPVEL-----VDPVSGPTKEDLEKATMLARQKGLNVKMLLLTNPSNPLGVIYSPEVVSNCISWARSKSMHTIVDEIYALSVRNNTDNKFSSVIEIL 256
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A2IA43_PSEMZ (Truncated ACC synthase n=1 Tax=Pseudotsuga menziesii TaxID=3357 RepID=A2IA43_PSEMZ) HSP 1 Score: 85.9 bits (211), Expect = 2.940e-16 Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 1
Query: 19 VERLRQSAGYGEPRGSQGVRRAVAALMGG-GDEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNALAAANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRPGATFQGLREVLA 558
V R ++ A Y + G R+A+A M G A ++D+I +AAG TA +L L + GEA L+P+PY+ GFD L V +P + D I LE AY++AR R ++ + LL+T+P NP G A ALR +A+ + +H V DE Y V F + E+LA
Sbjct: 92 VSRFKEIALYQDYHGLPACRKAIAKFMEEVGGRKAMFEKDRIVLAAGATAAHEVLTFCLADPGEAFLVPTPYYPGFDRDLRWRTGVEL-IPVHCSSDNDFQITIPALEAAYQNARDRNIQVKGLLITNPSNPLGTTMDATALRKLLAFVSGKNIHLVCDEIYSGSVFS-SPKFTSIAEILA 270
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: F0XZ90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ90_AURAN) HSP 1 Score: 86.3 bits (212), Expect = 4.250e-16 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 40 AGYGEPRGSQGVRRAVAALMGGGDEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNAL-AAANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETY 501
A YG G +R +AA + D + A GV A LF A+ E G+A LIP+PY++ FD+ L A ++ APVP + A L+ AY +A G K +ALLLT+PHNP+GR + + L AV W R LH V+DE Y
Sbjct: 119 ANYGPMEGQDALRAPLAAFLSARVVKTRVDAAHLSCATGVGAALNNLFFAICEAGDAVLIPAPYYSAFDSDLRAVCDLRRAPVPVRLDREKGYALTRAALDAAYHAA---GGKAKALLLTNPHNPTGRALSRKELELAVDWCDRRRLHLVSDEIY 270
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A4D8YGD1_SALSN (1-aminocyclopropane-1-carboxylate synthase n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YGD1_SALSN) HSP 1 Score: 85.5 bits (210), Expect = 5.020e-16 Identity = 68/189 (35.98%), Postives = 95/189 (50.26%), Query Frame = 1
Query: 13 GEVERLRQSAGYGEPRGSQGVRRAVAALMG---GGDEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFDNAL---AAANVVPAPVPS--GFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCVHRPGATFQGLREVL 555
G V R++A + + G R+A+A+ MG GG A D ++I + AG TA LL L + G+A L+P+PY+ GFD L N+VP S GF I PA LE AY +A RGL+ R +L+T+P NP G L + +A + +H V+DE Y G F + EVL
Sbjct: 85 GRVSSFRENALFQDYHGLLSFRKAMASFMGQIRGGR--AKFDPERIVITAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCDSSNGFE------ITPAALESAYSNAESRGLRVRGVLITNPSNPLGATVKRAVLEHVLDFAALKNIHLVSDEIYSGSAFSDGE-FVSIAEVL 264
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Match: A0A0L6CK46_9MICO (Aminotran_1_2 domain-containing protein n=1 Tax=Luteipulveratus halotolerans TaxID=1631356 RepID=A0A0L6CK46_9MICO) HSP 1 Score: 84.3 bits (207), Expect = 1.100e-15 Identity = 62/159 (38.99%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 46 YGEPRGSQGVRRAVAALMGGGDEWACPDEDKICVAAGVTAVAALLFKALMEEGEACLIPSPYFAGFD---NALAAANVVPAPVPSGFPGNVDAGIGPARLEKAYRSARRRGLKPRALLLTSPHNPSGRLYTARALRAAVAWARSRGLHTVADETYRHCV 513
YG G+ R AVA L+ D ++ +G +AV L AL EEGEA ++P+P++ GFD A A A +VPAP+ SG + A + A AR G A+ L SPHNP+GR+Y A ALR V R+ G+H V DE Y V
Sbjct: 73 YGSLHGTDEFRSAVADLLTS-HAGRPVDGSRLVAMSGTSAVLDALAYALCEEGEAVVVPAPFYGGFDVDFTARARARLVPAPLSSGDGFALSA----RAVTDAVEQARAAGTTVPAVALISPHNPTGRVYAADALREVVDATRALGVHLVVDEIYARSV 226 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19408.1 >prot_S-ischiensis_contig8.19408.1 ID=prot_S-ischiensis_contig8.19408.1|Name=mRNA_S-ischiensis_contig8.19408.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp AEVEGEVERLRQSAGYGEPRGSQGVRRAVAALMGGGDEWACPDEDKICVAback to top mRNA from alignment at S-ischiensis_contig8:1233151..1237264+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19408.1 ID=mRNA_S-ischiensis_contig8.19408.1|Name=mRNA_S-ischiensis_contig8.19408.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4114bp|location=Sequence derived from alignment at S-ischiensis_contig8:1233151..1237264+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1233151..1237264+ >mRNA_S-ischiensis_contig8.19408.1 ID=mRNA_S-ischiensis_contig8.19408.1|Name=mRNA_S-ischiensis_contig8.19408.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig8:1233151..1237264+ (Schizocladia ischiensis KU_0333)back to top |