mRNA_S-ischiensis_contig8.19403.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19403.1
Unique NamemRNA_S-ischiensis_contig8.19403.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1210107..1212570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size526
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19403.1prot_S-ischiensis_contig8.19403.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1210107..1212362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.9399233-CDS-S-ischiensis_contig8:1210106..12102481622817257.9399233-CDS-S-ischiensis_contig8:1210106..1210248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1210107..1210248 -
1695740975.2013865-CDS-S-ischiensis_contig8:1210106..12102481695740975.2013865-CDS-S-ischiensis_contig8:1210106..1210248Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1210107..1210248 -
1622817257.9518452-CDS-S-ischiensis_contig8:1211916..12120441622817257.9518452-CDS-S-ischiensis_contig8:1211916..1212044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1211917..1212044 -
1695740975.212169-CDS-S-ischiensis_contig8:1211916..12120441695740975.212169-CDS-S-ischiensis_contig8:1211916..1212044Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1211917..1212044 -
1622817257.9669034-CDS-S-ischiensis_contig8:1212314..12123621622817257.9669034-CDS-S-ischiensis_contig8:1212314..1212362Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1212315..1212362 -
1695740975.2238894-CDS-S-ischiensis_contig8:1212314..12123621695740975.2238894-CDS-S-ischiensis_contig8:1212314..1212362Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1212315..1212362 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.9782088-UTR-S-ischiensis_contig8:1212362..12125701622817257.9782088-UTR-S-ischiensis_contig8:1212362..1212570Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1212363..1212570 -
1695740975.2380111-UTR-S-ischiensis_contig8:1212362..12125701695740975.2380111-UTR-S-ischiensis_contig8:1212362..1212570Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1212363..1212570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19403.1

>prot_S-ischiensis_contig8.19403.1 ID=prot_S-ischiensis_contig8.19403.1|Name=mRNA_S-ischiensis_contig8.19403.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
MLPTASRRAPGPASRKADGHRSPWTVFVVFGLLAAGWLVVTVTLIPAQLA
AVQQQVSAGAATRSVLLRDGGADTGGRGAIDPPRAGTGAGAGAGARTGAG
GRKTMH
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mRNA from alignment at S-ischiensis_contig8:1210107..1212570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19403.1 ID=mRNA_S-ischiensis_contig8.19403.1|Name=mRNA_S-ischiensis_contig8.19403.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2464bp|location=Sequence derived from alignment at S-ischiensis_contig8:1210107..1212570- (Schizocladia ischiensis KU_0333)
TTTTGAGGGGGGGGCAAACGTTGGGGAGCCCCGAGGACAAACCCTCCAGC
ACGAGTCACCCTTGTCGACTGGAGCAGATCACTCTGCCCCAGTGTGTCTT
CGCGGGATCCCTATGGGAGGGGTGAACACGCTGGGGCACAGGATCCCCGA
CCTGGCTGCAGCACTGCAATAAGTTGACCGGGGCAGAACAAACGCTCGTG
GGGCTCAGATGCTGCCGACAGCCAGCCGCCGGGCTCCAGGCCCGGCCTCA
CGGAAGGTAAGAGCCACAGGGATCATGACTACCTACAATCTGGCACCAGA
CTGCACGGAGGACACTGAGCACGTGTTGTCCGGACGCCTCCACTGCGCAA
TGTGGTGGCGTACGTCTGCGGACGGCGGTCGCGCCACTCTGACGGAGGAT
AGGCTGCTGACACCACTGCACGTGCAACGCCCGCCACCCATGATATCCGT
GCATGCCGAGCCCCCCCCCGTCCCGGCTTATGGTCACCCATCCCGTGCGT
TCACCACCGTGGCACCGGGCCGGCAGGCTGACGGGCACAGGTCGCCATGG
ACAGTTTTTGTGGTGTTTGGGCTGCTGGCGGCGGGATGGCTGGTGGTGAC
AGTTACGCTCATCCCGGCCCAGCTGGCAGCGGTGCAGCAGCAGGTGTCCG
CCGGGTAAGAGCCACAAGCATTGTACGCGCAGTACAGTACCTATCAATTT
TGCCGCCTGGTGGGTGAGCGAGTGAGGTTTCACGAACACTTCCCCAGTAA
AGTACTTACATGCCGTAGTGGAGAAATTGGGATGCGCTTTTGAGGTACAT
CTTTTATTGTGTTTGTCTTACACGCCACCAGACACGCGGCAGACACGTGC
GGCAACCGTACGGCAAGCGTTCGACGCCCTTTCAAACTTCACCTGGCTCC
GGTGTGTACTCTGAAGCGGAGAAACATATTTTGCCGTGTCACGCTATTTG
CCACCGCTATGCCGTAGACATGTAACAGGTGCGTGCGCTCGAAACAGCAC
GTGAGTGCTTGATGCGCTCGAGCCCTCTCCTGGCGTCCGAGGCGCAAATG
CATGTGCAGTAAACGTGCAGCAACCTTCTGCAGGACTTCCGAGTAATTGT
ACTTCAAAGTGCCCTATTTTCTCCCACCGTACTTGCAGGTACGGTGCTGT
ACTTCCAAGCAGCGCGCGCCTAAGTACTGCAGTTAGTAGCAGCAACACTC
TGCATTTGTATGTGTGTTGGCTGGCAACTGCCTGGTGAGCCGAGCCTGAG
CGAGTGCTTGATCAGTCAAGTATGTACATCCAAGGTTGATGGTCTTTGTG
GACTCTACGGCACCACAACGCGAGTACATACGTATATACAATGCAACAGC
ACTCCCCAGTGCCGCGTCTCGAATGAGGCGCGCGGTCAATGGTCTCGGGA
CTACGGCAAGCACAACGTGAGTACATATATATATACTGTACTGTACTGCA
CAATAGTGCCACGTGTGTGGTCAAGTGCTTGCACACGGAGGTAAGTGCGC
ACTCACGTTGGACTGGGGACAGCCCGTCCTGTTCATGCCACCGACCGTCG
GCCAGCCCCCGCGGGGTAGCCTTTCGGCCATTGGCCTCGCGCCCCTACTT
CGCCGGGGCGGAGCACACCGGGCTCTCGCCTCCTTGGCCAGGCGTGTACT
ACTGTACTGTACAGTGCAGAGTGCTGTACTGTATATGGGTAAGCATGTGA
CGTCAAACTACAATACTTTGGGGTGCGGATCGCATGACATCACATCAGAT
GGGACGCTCGGTGCTGCGATGCGATATCATGCCATGCAATGTGATGTCAA
ACTACAGCGCGTTCGTGTCGACGATCACACCACATCACATCACACCTCTA
TGGACAATTTGGGGCCTGGCTTGACGGCTCTCGGGGGCGGGGGACTGTGC
CCGACATCTGCCAGCGCAATCCATATGTCCCCCCCCCGAGGCCAGCCTCC
CTGACATGGAGAGGTTGGCAGTAGCCAGCCTCCCCAACACCTAGCAGAGG
CATCGGTGCTCCGTCCCGTAGAATCGCGCCTGTGATGTGATGTCAAACTA
CAGCACTTTAGAGTGCGCATCACATCACATCACATCGTTTCACATCACTT
CCTGTAGGGTCACCCCTGTGGGGCACGTCGCCAACAGCAGGCAACTCATG
AGCACACACACACACACTGCCGCCGTCCCCCCCCCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCGCCCCCGTTCCGTCCCTC
GTTCCCTCTTGCCGCCGCCCCGCCCCGCCCCCCCCATCGGCAATGCGCAA
AAAAAAAAAAAAAAAAAAAAAGTGCCGCAACAAGGTCTGTCCTCCTGAGA
GACGGGGGCGCAGACACCGGGGGGAGGGGGGCAATAGACCCGCCCCGCGC
AGGCACAGGCGCAGGCGCAGGCGCAGGTGCGCGAACGGGCGCCGGGGGGC
GCAAAACGATGCAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1210107..1212570-

>mRNA_S-ischiensis_contig8.19403.1 ID=mRNA_S-ischiensis_contig8.19403.1|Name=mRNA_S-ischiensis_contig8.19403.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig8:1210107..1212570- (Schizocladia ischiensis KU_0333)
ATGCTGCCGACAGCCAGCCGCCGGGCTCCAGGCCCGGCCTCACGGAAGAT
GCTGCCGACAGCCAGCCGCCGGGCTCCAGGCCCGGCCTCACGGAAGGCTG
ACGGGCACAGGTCGCCATGGACAGTTTTTGTGGTGTTTGGGCTGCTGGCG
GCGGGATGGCTGGTGGTGACAGTTACGCTCATCCCGGCCCAGCTGGCAGC
GGTGCAGCAGCAGGTGTCCGCCGGGCTGACGGGCACAGGTCGCCATGGAC
AGTTTTTGTGGTGTTTGGGCTGCTGGCGGCGGGATGGCTGGTGGTGACAG
TTACGCTCATCCCGGCCCAGCTGGCAGCGGTGCAGCAGCAGGTGTCCGCC
GGTGCCGCAACAAGGTCTGTCCTCCTGAGAGACGGGGGCGCAGACACCGG
GGGGAGGGGGGCAATAGACCCGCCCCGCGCAGGCACAGGCGCAGGCGCAG
GCGCAGGTGCGCGAACGGGCGCCGGGGGGCGCAAAACGATGCATTGCCGC
AACAAGGTCTGTCCTCCTGAGAGACGGGGGCGCAGACACCGGGGGGAGGG
GGGCAATAGACCCGCCCCGCGCAGGCACAGGCGCAGGCGCAGGCGCAGGT
GCGCGAACGGGCGCCGGGGGGCGCAAAACGATGCAT
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