mRNA_S-ischiensis_contig8.19389.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19389.1
Unique NamemRNA_S-ischiensis_contig8.19389.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: T1H8D2_RHOPR (Ubiquitin-like domain-containing protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1H8D2_RHOPR)

HSP 1 Score: 60.1 bits (144), Expect = 7.150e-9
Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 3 
Query:   63 EPRDDGEVILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLIC 320
            E  D+ +V L +K+ +    D  +    +CTIR +K  L +    HP P  Q++IYSGK+ GDE  L DVLK    +     HL+C
Sbjct:   18 EIMDNAKVKLTIKAPNQMVDDHLIDCDRNCTIREIKEYLFKDYPTHPKPENQKLIYSGKLLGDELPLSDVLKTYAGTENNTIHLVC 103
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: A0A224XFZ3_9HEMI (Putative cysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein n=4 Tax=Triatominae TaxID=70999 RepID=A0A224XFZ3_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 2.160e-8
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 3 
Query:   72 DDGEVILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLIC 320
            D+ +V L +K+ +    D  +    +CTIR +K  L +    HP P  Q++IYSGK+ GDE  L DVLK    +     HL+C
Sbjct:    2 DNTKVKLTIKAPNQMVDDHLIDCDRNCTIREIKECLHKDYPTHPKPENQKLIYSGKLLGDEMPLSDVLKTYAGTENNTIHLVC 84
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: A0A0P4VMK6_9HEMI (Putative cysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0P4VMK6_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 4.140e-8
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 3 
Query:   72 DDGEVILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLIC 320
            D+ +V L +K+ +    D  +    +CTIR +K  L +    HP P  Q++IYSGK+ GDE  L DVLK    +     HL+C
Sbjct:    2 DNAKVKLTIKAPNQMVDDHLIDCDRNCTIREIKEYLFKDYPTHPKPENQKLIYSGKLLGDELPLSDVLKTYAGTENNTIHLVC 84
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: A0A1Y1HZN6_KLENI (Ubiquitin-like domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HZN6_KLENI)

HSP 1 Score: 57.8 bits (138), Expect = 2.310e-7
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 3 
Query:   84 VILAVKSVSGG-TGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLI 317
            V L V++ S   + D +L +    TI+ +K  L+ + +GHP P +Q++I SG+I  D ++L+DVLK A+ + PQ  HL+
Sbjct:   14 VELLVRNPSASFSKDLKLKISPTATIQALKDRLKEEYDGHPPPAQQKLIISGQIVKDNQLLKDVLKHANLAEPQVVHLV 92
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: S2JRF4_MUCC1 (Ubiquitin-like domain-containing protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JRF4_MUCC1)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-6
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   75 DGEVILAVKSVS-GGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLICPP 326
            D E+ + ++S S   T + + TL  + TI T+K  ++     HP PT QRIIYSGK+  D ++L ++LK +D      FHL+  P
Sbjct:    6 DKEIAVHIRSPSLNETLEVKTTL--NATILTLKKSIEPVHPHHPKPTNQRIIYSGKLLKDADILTEILKMSDEEVTPTFHLVVKP 88
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: A0A8J4Y3Z4_CHIOP (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4Y3Z4_CHIOP)

HSP 1 Score: 53.1 bits (126), Expect = 5.100e-6
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 3 
Query:   84 VILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLICPPPAA 335
            V L +K+ +  T D RL   +  TI  +K  L      HP    QR+IYSG++  D+ +L +VL+          HL+C PP A
Sbjct:    5 VTLIIKAANQSTPDQRLECDSGWTIAILKAHLANTHPAHPKTAEQRLIYSGQLLADQNLLCNVLRRPSEENAYTIHLVCSPPQA 88
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: UPI000C759B29 (homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C759B29)

HSP 1 Score: 52.0 bits (123), Expect = 2.190e-5
Identity = 25/80 (31.25%), Postives = 44/80 (55.00%), Query Frame = 3 
Query:   81 EVILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLIC 320
            EV + +KS S  + D  +T   +  +  +K  +Q + E  P P  Q+++YSGK+  D ++LR+ L+  D  +    HL+C
Sbjct:    3 EVNIRIKSPSSVSPDLHITCDINKNVLHLKEKIQEKYESRPAPGEQKLVYSGKLLQDNQLLREFLRFEDECSLFTIHLVC 82
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: C1MM33_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MM33_MICPC)

HSP 1 Score: 49.7 bits (117), Expect = 7.930e-5
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:  153 TIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEE-VLRDVLKAADWSAPQKFHLI 317
            T+  +K  ++ Q EG+P    QRII++G +  D+  +L+DVLK+AD S PQ FH++
Sbjct:   46 TVGDLKRQIEEQHEGNPPAATQRIIHAGALLRDDAALLKDVLKSADLSVPQVFHMV 101
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BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Match: A0A0C9LXF4_9FUNG (Ubiquitin-like domain-containing protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9LXF4_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 8.260e-5
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:   75 DGEVILAVKSVS-GGTGDARLTLMTDCTIRTVKLLLQRQCEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLICPP 326
            D E+ + V+S S   T + + TL  + TI T+K  ++     HP    QRIIYSGK+  D ++L ++LK +D      FHL+  P
Sbjct:   59 DKEITVLVRSPSLNETLEVKTTL--NATILTLKKSIEPVHPHHPKSANQRIIYSGKLLQDADMLAEILKKSDEEVTPTFHLVVKP 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
T1H8D2_RHOPR7.150e-937.21Ubiquitin-like domain-containing protein n=1 Tax=R... [more]
A0A224XFZ3_9HEMI2.160e-837.35Putative cysteine-responsive endoplasmic reticulum... [more]
A0A0P4VMK6_9HEMI4.140e-837.35Putative cysteine-responsive endoplasmic reticulum... [more]
A0A1Y1HZN6_KLENI2.310e-737.97Ubiquitin-like domain-containing protein n=1 Tax=K... [more]
S2JRF4_MUCC11.420e-637.65Ubiquitin-like domain-containing protein n=1 Tax=M... [more]
A0A8J4Y3Z4_CHIOP5.100e-634.52Homocysteine-responsive endoplasmic reticulum-resi... [more]
UPI000C759B292.190e-531.25homocysteine-responsive endoplasmic reticulum-resi... [more]
C1MM33_MICPC7.930e-542.86Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A0C9LXF4_9FUNG8.260e-536.47Ubiquitin-like domain-containing protein n=1 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1120956..1122687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog13249.RPRC000272-PA
GOsGO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0023052,GO:0030968,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042221,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310
EggNOG free text desc.Ubiquitin homologues
EggNOG OGs39FMK@33154,3BH9P@33208,3CXU3@33213,3EBKZ@33342,3SMA9@50557,41Z3D@6656,KOG4583@1,KOG4583@2759
COG Functional cat.O
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19389.1prot_S-ischiensis_contig8.19389.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1120994..1122687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.175707-UTR-S-ischiensis_contig8:1120955..11209931622817278.175707-UTR-S-ischiensis_contig8:1120955..1120993Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1120956..1120993 +
1695740989.9586422-UTR-S-ischiensis_contig8:1120955..11209931695740989.9586422-UTR-S-ischiensis_contig8:1120955..1120993Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1120956..1120993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.1878195-CDS-S-ischiensis_contig8:1120993..11212361622817278.1878195-CDS-S-ischiensis_contig8:1120993..1121236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1120994..1121236 +
1695740989.9716053-CDS-S-ischiensis_contig8:1120993..11212361695740989.9716053-CDS-S-ischiensis_contig8:1120993..1121236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1120994..1121236 +
1622817278.1984003-CDS-S-ischiensis_contig8:1122624..11226871622817278.1984003-CDS-S-ischiensis_contig8:1122624..1122687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1122625..1122687 +
1695740989.9812908-CDS-S-ischiensis_contig8:1122624..11226871695740989.9812908-CDS-S-ischiensis_contig8:1122624..1122687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1122625..1122687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19389.1

>prot_S-ischiensis_contig8.19389.1 ID=prot_S-ischiensis_contig8.19389.1|Name=mRNA_S-ischiensis_contig8.19389.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MVLQGQQAEPRDDGEVILAVKSVSGGTGDARLTLMTDCTIRTVKLLLQRQ
CEGHPCPTRQRIIYSGKICGDEEVLRDVLKAADWSAPQKFHLICPPPAAG
SA
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mRNA from alignment at S-ischiensis_contig8:1120956..1122687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19389.1 ID=mRNA_S-ischiensis_contig8.19389.1|Name=mRNA_S-ischiensis_contig8.19389.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1732bp|location=Sequence derived from alignment at S-ischiensis_contig8:1120956..1122687+ (Schizocladia ischiensis KU_0333)
CAAGCTCAAGTGCTTCGACTGCTTGACAAGGGGGAGGCATGGTCCTGCAA
GGACAGCAAGCTGAGCCAAGGGATGACGGCGAGGTCATCCTCGCCGTAAA
GAGCGTATCCGGCGGCACTGGGGACGCGAGGCTGACCCTAATGACCGATT
GTACCATCCGCACAGTCAAGTTGCTTCTCCAGCGCCAATGCGAGGGCCAC
CCTTGCCCTACCAGGCAAAGGATAATCTACTCCGGGAAAATATGCGGCGA
CGAAGAGGTGCTGAGGGATGTGCTGAAGGCGGTGAGAATGGGTGCAGCGC
CATGAGCGCGACGGCACGACCTCGAGGCACGCGACACCGCCCGACACGTG
TACACACGATATTGCTCGACACTCTTGCGCTAGGCACCTCAAAGCCGTGG
ACTGGTTTGAATTTCATTGGTTTGTTGAGGACTCATGAGGGAATTGGTCG
ACTGTGCTACGATAGACCCTCGTTCGAGTATTTTTTGGGTTTGCAAGCCA
CCTTCTATGACCTGCGTGATACGTATGTACTTTGGAGTAGGTACTAACTT
AAACGTAGAAAGCACATACGTTGAGCCCTTCGTACCTGTACGTGGGCTTA
ATTGTAACTCACTTGGCTTATCAGAGCACCGGAATCGCCAGAGCCGGTTT
GCACCACAGTCTAATTTGGGACAACACTTTTCCTCGCCGAGATCTGGTCC
CATTTGGCCGAAACCGCTTGGGAATGGAGAAGAGTCCCAGCTGGTCGCAG
GACCAATCATTGCGAAGATTTGAGAAAATTTAGGGACGAATTCGGCAAAT
GGGCGGCGAGAATCGGATTTCAGATGAGCAAATAGGCATGTGGTCAATGG
TCTCGGGTACGGCACGCAAAAGTATTACAGGTAACGACACCTCATAAACA
GCTGTGAAGAAACGAAGCCTTCAAATCACGCCGAACTAAGAAACGCCGAA
GGCTTCATACCCCCCGCGGTATAAGAAACGGCACAAACGCCTCCCATGTC
GGGGCTGGCTGGGCTGCGATCCAAAAATTGCGGGGAGGGGAGAGACGAGA
CCTCCCCGCCCCTGGACGATGGCAATTCTTGAGCGGCCAGTCGTGGACTC
AAACACTGGCGTCCTTGGTGCACCTGAGAAGTGAGGGGGGGCTGCTGTCG
CGGCAGTTCGACGTCCTCAAGGGCCTCGTGCGCAGATCTGCCGACATCCC
GACAGATTTCGTGCAGGGGCTGCGCGCTCTTTGGGATGTCAGGCGTAGCG
GCGGCTTGACACCTGAGGAGTACGACGAAGATGTGGATTCTCTGGTCGAT
ACTCTGCTGGGGGCACCAGGCGCGCAGGGTGGCGGAAGGGGGGACGTCGT
CGTGACGTCTTCCTGTGCTGCGATCCTCCCGCAGCCGAGGCCGGTATACT
TCGAAGCACAAGGATTTTGCCTAAGAATGGCCAAAAGTGCCCTTTCAAGA
AAAGCCCAAAATAAGAAACACCTTCATCAGAAAAATCCCTTGCCTCGAAA
AAGAAATTAAGAAAAAAGACTCGTAATCCTGGAGTTTCTTGTGAGGTGTC
GTTACCTGTACTTGCAAATACTTCGAAGTATGCATGTACTTCGAAGTACC
CAAAGTACCCCAAGCACACGGAACACCAATGCGTCTACAACACGCCCCTG
CCGCCGCCCCTGCCCGCAGGCCGACTGGTCTGCGCCCCAGAAATTCCACC
TCATCTGCCCCCCCCCCGCCGCGGGTTCTGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1120956..1122687+

>mRNA_S-ischiensis_contig8.19389.1 ID=mRNA_S-ischiensis_contig8.19389.1|Name=mRNA_S-ischiensis_contig8.19389.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig8:1120956..1122687+ (Schizocladia ischiensis KU_0333)
ATGGTCCTGCAAGGACAGCAAGCTGAGCCAAGGGATGACGGCGAGGTCAT
CCTCGCCGTAAAGAGCGTATCCGGCGGCACTGGGGACGCGAGGCTGACCC
TAATGACCGATTGTACCATCCGCACAGTCAAGTTGCTTCTCCAGCGCCAA
TGCGAGGGCCACCCTTGCCCTACCAGGCAAAGGATAATCTACTCCGGGAA
AATATGCGGCGACGAAGAGGTGCTGAGGGATGTGCTGAAGGCGATGGTCC
TGCAAGGACAGCAAGCTGAGCCAAGGGATGACGGCGAGGTCATCCTCGCC
GTAAAGAGCGTATCCGGCGGCACTGGGGACGCGAGGCTGACCCTAATGAC
CGATTGTACCATCCGCACAGTCAAGTTGCTTCTCCAGCGCCAATGCGAGG
GCCACCCTTGCCCTACCAGGCAAAGGATAATCTACTCCGGGAAAATATGC
GGCGACGAAGAGGTGCTGAGGGATGTGCTGAAGGCGGCCGACTGGTCTGC
GCCCCAGAAATTCCACCTCATCTGCCCCCCCCCCGCCGCGGGTTCTGCTG
CCGACTGGTCTGCGCCCCAGAAATTCCACCTCATCTGCCCCCCCCCCGCC
GCGGGTTCTGCT
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