mRNA_S-ischiensis_contig8.19388.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19388.1
Unique NamemRNA_S-ischiensis_contig8.19388.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: A0A835YW34_9STRA (Protein kish n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW34_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.380e-31
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDT--EEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIKQ 285
            MSAIFDFSSLITVLLL ICTCTYLRG+R  IFD   E   H+G +G+CWK +R+GER+SPYV  +C+ MAVH+LFIKQ
Sbjct:    1 MSAIFDFSSLITVLLLLICTCTYLRGFRSGIFDNSAEPHRHTGFKGLCWKFSRIGERISPYVSVSCLLMAVHILFIKQ 78          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: D7G6V7_ECTSI (Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V7_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.960e-29
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVL 273
            MSA+F    L+TV+LL IC CTY+RGYRK IFD E+GSHSG+RG+CWKAARVGERLSPYV  A + MA  VL
Sbjct:    1 MSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 72          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: W7TJ60_9STRA (Transmembrane protein 167 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ60_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.980e-28
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGS------HSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIKQ 285
            MSAIFDFSSLITV+LLFI TCTYLRG+R TIFD    +      H G+ G CWKA+R+GER S +VG ACV MAVHVLF K+
Sbjct:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFFKK 157          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: B7FZL0_PHATC (Protein kish n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZL0_PHATC)

HSP 1 Score: 100 bits (248), Expect = 1.730e-25
Identity = 50/75 (66.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIK 282
            MSAIFDFSSL+TVLLL ICTCTYLR  R  IFD    +  G  G  WK +RVGERLSPYVG  C  MAVH+LF K
Sbjct:    1 MSAIFDFSSLVTVLLLLICTCTYLRELRPGIFDA---AREGFWGFLWKLSRVGERLSPYVGAGCALMAVHILFFK 72          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: F0WK68_9STRA (Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK68_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.580e-24
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEE--GSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVLF 276
            MSA+F    LITV+LLFICTC+Y+R    T+FD  +  G H G+ G+CWKA+R+GER SPYV GA + MA+H LF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQPGKHEGLSGLCWKASRIGERKSPYVAGALILMALHTLF 75          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: A0A8D0GFE5_SPHPU (Protein kish n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0GFE5_SPHPU)

HSP 1 Score: 94.4 bits (233), Expect = 5.890e-23
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   37 GGGYRLSMSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIK 282
            GG  R++MSAIF+F SL+TV+LL ICTCTY+R    T+ D  +   SG+ GI WK AR+GER SPYV   C+AMA  +LF++
Sbjct:   15 GGWRRVTMSAIFNFQSLLTVILLLICTCTYIRSLAPTLLDKNK---SGLLGIFWKCARIGERKSPYVAVCCIAMAFSILFVQ 93          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: F0Y3L9_AURAN (Protein kish n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L9_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 6.880e-23
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGS------------HSGVRGICWKAARVGERLSPYVGGACVAMAVHVL 273
            MSAIFDFSSL+TVLLL ICTCTY+R  R ++FD    +             SG+RG CWKA+R+GERLSPYV     AMA H+L
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHIL 84          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: A0A1Z5JCC7_FISSO (Protein kish n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCC7_FISSO)

HSP 1 Score: 93.6 bits (231), Expect = 8.500e-23
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDT--EEGS----HSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIK 282
            MSAIF+FSSL+TVLLL ICTC YLR  R  IFD   +EG       G+ G  WK +R+GERLSPY+G  C  MA+HVLFI+
Sbjct:    1 MSAIFNFSSLLTVLLLLICTCAYLRELRPGIFDPPRKEGETKLKREGLTGFLWKMSRIGERLSPYIGVGCFIMAIHVLFIQ 81          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: A0A482RTZ6_9ARCH (Protein kish n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTZ6_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-22
Identity = 48/99 (48.48%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDT------------------------EEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVLFIK 282
            MSA+FDF SLI VLLLFIC  T+ R    TIFD+                         +  H G+RG+CWKA+R+GERLSPYV G CV MA H+LFI+
Sbjct:    1 MSALFDFPSLIVVLLLFICATTFTRSLYPTIFDSVPNNGQSGQNDPNAMSSMSRITSSNKQEHVGLRGLCWKASRIGERLSPYVAGVCVVMAFHILFIR 99          
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Match: K3X7N3_GLOUD (Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X7N3_GLOUD)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-22
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   58 MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDT--EEGSHSGVRGICWKAARVGERLSPYVGGACVAMAVHVL 273
            MSA+F    LITV+LLFICTCTY+R    TIFD   + G H G+ G+CWKA+R+GER SPYV G  V MA H L
Sbjct:    1 MSALFSLQGLITVILLFICTCTYIRMKFPTIFDRGQQPGKHEGLSGLCWKASRIGERKSPYVAGVLVVMAFHTL 74          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW34_9STRA2.380e-3169.23Protein kish n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D7G6V7_ECTSI2.960e-2969.44Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
W7TJ60_9STRA8.980e-2865.85Transmembrane protein 167 n=2 Tax=Nannochloropsis ... [more]
B7FZL0_PHATC1.730e-2566.67Protein kish n=2 Tax=Phaeodactylum tricornutum Tax... [more]
F0WK68_9STRA6.580e-2457.33Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK... [more]
A0A8D0GFE5_SPHPU5.890e-2354.88Protein kish n=1 Tax=Sphenodon punctatus TaxID=850... [more]
F0Y3L9_AURAN6.880e-2355.95Protein kish n=1 Tax=Aureococcus anophagefferens T... [more]
A0A1Z5JCC7_FISSO8.500e-2359.26Protein kish n=1 Tax=Fistulifera solaris TaxID=151... [more]
A0A482RTZ6_9ARCH1.020e-2248.48Protein kish n=1 Tax=archaeon TaxID=1906665 RepID=... [more]
K3X7N3_GLOUD1.080e-2259.46Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1118687..1119179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog2880.D7G6V7
EggNOG free text desc.Protein of unknown function (DUF1242)
EggNOG OGs2E2NW@1,2S9VV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1242
Ec32 orthologEc-01_012070.1
Exons2
Model size352
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19388.1prot_S-ischiensis_contig8.19388.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1118751..1119122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.107957-UTR-S-ischiensis_contig8:1118686..11187501622817278.107957-UTR-S-ischiensis_contig8:1118686..1118750Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1118687..1118750 -
1695740989.9068427-UTR-S-ischiensis_contig8:1118686..11187501695740989.9068427-UTR-S-ischiensis_contig8:1118686..1118750Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1118687..1118750 -
1622817278.1432786-UTR-S-ischiensis_contig8:1119122..11191791622817278.1432786-UTR-S-ischiensis_contig8:1119122..1119179Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1119123..1119179 -
1695740989.941622-UTR-S-ischiensis_contig8:1119122..11191791695740989.941622-UTR-S-ischiensis_contig8:1119122..1119179Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1119123..1119179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817278.1200325-CDS-S-ischiensis_contig8:1118750..11189781622817278.1200325-CDS-S-ischiensis_contig8:1118750..1118978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1118751..1118978 -
1695740989.9202204-CDS-S-ischiensis_contig8:1118750..11189781695740989.9202204-CDS-S-ischiensis_contig8:1118750..1118978Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1118751..1118978 -
1622817278.13235-CDS-S-ischiensis_contig8:1119119..11191221622817278.13235-CDS-S-ischiensis_contig8:1119119..1119122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1119120..1119122 -
1695740989.9290535-CDS-S-ischiensis_contig8:1119119..11191221695740989.9290535-CDS-S-ischiensis_contig8:1119119..1119122Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1119120..1119122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19388.1

>prot_S-ischiensis_contig8.19388.1 ID=prot_S-ischiensis_contig8.19388.1|Name=mRNA_S-ischiensis_contig8.19388.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MSAIFDFSSLITVLLLFICTCTYLRGYRKTIFDTEEGSHSGVRGICWKAA
RVGERLSPYVGGACVAMAVHVLFIKQ*
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mRNA from alignment at S-ischiensis_contig8:1118687..1119179-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19388.1 ID=mRNA_S-ischiensis_contig8.19388.1|Name=mRNA_S-ischiensis_contig8.19388.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=493bp|location=Sequence derived from alignment at S-ischiensis_contig8:1118687..1119179- (Schizocladia ischiensis KU_0333)
GCAAGCACCCTCTTGCTCCCCCGCCGGGGGAGGTGAGGAGGAGGGTACAG GCTCAGCATGGTGAGAAAAACAAGCGATACCACATCGCGCCGCGTTATTC GTTGAGTTTTGCTGGCTCGCGGTCGTACATGATCGCCTCGTCCACCTCGA TCCTGCCCCCCACCCGCCCCCGCCCCTGTGCCTCGTGTGACACCTCCACA GTCAGCTATCTTCGACTTCTCCAGCCTTATCACGGTATTACTTCTCTTCA TTTGCACGTGCACGTACTTGCGGGGATATCGGAAGACCATCTTCGACACG GAGGAAGGCTCGCATAGCGGGGTGCGGGGGATCTGCTGGAAGGCGGCGCG CGTCGGCGAGCGACTCAGTCCGTACGTCGGGGGAGCTTGCGTGGCCATGG CCGTGCACGTGCTCTTCATCAAGCAGTGACCGCACGGCCCCCTTTCGGCG TGCCGACCCATAATGCAATCTCATCACAATTTTCACAATCCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1118687..1119179-

>mRNA_S-ischiensis_contig8.19388.1 ID=mRNA_S-ischiensis_contig8.19388.1|Name=mRNA_S-ischiensis_contig8.19388.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig8:1118687..1119179- (Schizocladia ischiensis KU_0333)
ATGATGTCAGCTATCTTCGACTTCTCCAGCCTTATCACGGTATTACTTCT
CTTCATTTGCACGTGCACGTACTTGCGGGGATATCGGAAGACCATCTTCG
ACACGGAGGAAGGCTCGCATAGCGGGGTGCGGGGGATCTGCTGGAAGGCG
GCGCGCGTCGGCGAGCGACTCAGTCCGTACGTCGGGGGAGCTTGCGTGGC
CATGGCCGTGCACGTGCTCTTCATCAAGCAGTGATCAGCTATCTTCGACT
TCTCCAGCCTTATCACGGTATTACTTCTCTTCATTTGCACGTGCACGTAC
TTGCGGGGATATCGGAAGACCATCTTCGACACGGAGGAAGGCTCGCATAG
CGGGGTGCGGGGGATCTGCTGGAAGGCGGCGCGCGTCGGCGAGCGACTCA
GTCCGTACGTCGGGGGAGCTTGCGTGGCCATGGCCGTGCACGTGCTCTTC
ATCAAGCAGTGA
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