mRNA_S-ischiensis_contig8.19386.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19386.1
Unique NamemRNA_S-ischiensis_contig8.19386.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1088996..1089919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size466
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19386.1prot_S-ischiensis_contig8.19386.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1088996..1089913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.7230978-CDS-S-ischiensis_contig8:1088995..10893821622817257.7230978-CDS-S-ischiensis_contig8:1088995..1089382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1088996..1089382 -
1695740975.07449-CDS-S-ischiensis_contig8:1088995..10893821695740975.07449-CDS-S-ischiensis_contig8:1088995..1089382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1088996..1089382 -
1622817257.7366521-CDS-S-ischiensis_contig8:1089841..10899131622817257.7366521-CDS-S-ischiensis_contig8:1089841..1089913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1089842..1089913 -
1695740975.0844588-CDS-S-ischiensis_contig8:1089841..10899131695740975.0844588-CDS-S-ischiensis_contig8:1089841..1089913Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1089842..1089913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.7474356-UTR-S-ischiensis_contig8:1089913..10899191622817257.7474356-UTR-S-ischiensis_contig8:1089913..1089919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1089914..1089919 -
1695740975.094693-UTR-S-ischiensis_contig8:1089913..10899191695740975.094693-UTR-S-ischiensis_contig8:1089913..1089919Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 1089914..1089919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19386.1

>prot_S-ischiensis_contig8.19386.1 ID=prot_S-ischiensis_contig8.19386.1|Name=mRNA_S-ischiensis_contig8.19386.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
METTLGQGQNAPGYAMANGGDQSQVTLQELFPNLDPDVLRSIWYSSGGHF
QAAVDRALDVGSDNNGSGVPSPFPDLRNTRSQGSQPLQQQHSHDGLLGPS
PPGARRPARPLSAAAALGLDMGGWEEPTGGPGELPAATPRSYVLRQGELD
LLN
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mRNA from alignment at S-ischiensis_contig8:1088996..1089919-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19386.1 ID=mRNA_S-ischiensis_contig8.19386.1|Name=mRNA_S-ischiensis_contig8.19386.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=924bp|location=Sequence derived from alignment at S-ischiensis_contig8:1088996..1089919- (Schizocladia ischiensis KU_0333)
CAGCTTATGGAAACAACGCTTGGACAGGGACAAAATGCGCCAGGCTACGC
AATGGCCAACGGTGGGGACCAATCGCAGGTCGGTCGATTTCCAACGTGAA
GAAACGGCCGCGACAATACCGTTTCATTATTGCACGGCTTTGAGTTTTTG
CGCGTCGTAGAGTTGTTGCACGCAATCGCTCGTTGTGGCTCTGAAACACG
ATTTCTGAGTAATTCAGGTCGGATGCTTCTTGCCCTGGGGGACGATGTAT
CATTCAAACTTGCAGCCCATGCGACCAATTGTGCGCTGCACTACTTAGTA
ACTTCAACCTAACAGGCGAATTGCGGCACTAAACCATAGCTCTTTGGCTG
GAGCAACAACTTTTGGTTTGAGGTAGAGCTGCAGTTAAAACCAGGGCCTA
CAGCGTGTACGCCGCCATTAACAGGCAAAACGCGGCACTAACCACAGCTC
TTTGGCTGGAGTAGCAACAACTTTTGGTTTGACGTAGAGCTGCCGTAAAC
CAGTGCCTATGCCTATGTGTACGCTGCCATCGGCCAGGTGACGCTCCAGG
AGCTCTTCCCCAACCTGGACCCGGACGTCCTGAGGTCCATATGGTACTCC
TCTGGAGGGCACTTCCAGGCGGCCGTCGACCGCGCCCTCGACGTGGGCAG
CGACAACAACGGCTCCGGCGTACCCTCGCCATTCCCTGACCTCCGCAACA
CCAGGTCTCAGGGCTCGCAACCTCTGCAGCAGCAGCACAGCCACGATGGC
CTGCTGGGCCCGAGTCCCCCGGGGGCAAGGCGCCCAGCCAGGCCATTGTC
GGCGGCGGCGGCGCTTGGCCTAGACATGGGGGGGTGGGAAGAGCCCACGG
GCGGGCCGGGGGAGCTCCCCGCGGCAACCCCTCGAAGCTATGTGCTGCGC
CAGGGGGAGCTGGACCTGCTCAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1088996..1089919-

>mRNA_S-ischiensis_contig8.19386.1 ID=mRNA_S-ischiensis_contig8.19386.1|Name=mRNA_S-ischiensis_contig8.19386.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig8:1088996..1089919- (Schizocladia ischiensis KU_0333)
ATGGAAACAACGCTTGGACAGGGACAAAATGCGCCAGGCTACGCAATGGC
CAACGGTGGGGACCAATCGCAGATGGAAACAACGCTTGGACAGGGACAAA
ATGCGCCAGGCTACGCAATGGCCAACGGTGGGGACCAATCGCAGGTGACG
CTCCAGGAGCTCTTCCCCAACCTGGACCCGGACGTCCTGAGGTCCATATG
GTACTCCTCTGGAGGGCACTTCCAGGCGGCCGTCGACCGCGCCCTCGACG
TGGGCAGCGACAACAACGGCTCCGGCGTACCCTCGCCATTCCCTGACCTC
CGCAACACCAGGTCTCAGGGCTCGCAACCTCTGCAGCAGCAGCACAGCCA
CGATGGCCTGCTGGGCCCGAGTCCCCCGGGGGCAAGGCGCCCAGCCAGGC
CATTGTCGGCGGCGGCGGCGCTTGGCCTAGACATGGGGGGGTGGGAAGAG
CCCACGGGCGGGCCGGGGGAGCTCCCCGCGGCAACCCCTCGAAGCTATGT
GCTGCGCCAGGGGGAGCTGGACCTGCTCAACGTGACGCTCCAGGAGCTCT
TCCCCAACCTGGACCCGGACGTCCTGAGGTCCATATGGTACTCCTCTGGA
GGGCACTTCCAGGCGGCCGTCGACCGCGCCCTCGACGTGGGCAGCGACAA
CAACGGCTCCGGCGTACCCTCGCCATTCCCTGACCTCCGCAACACCAGGT
CTCAGGGCTCGCAACCTCTGCAGCAGCAGCACAGCCACGATGGCCTGCTG
GGCCCGAGTCCCCCGGGGGCAAGGCGCCCAGCCAGGCCATTGTCGGCGGC
GGCGGCGCTTGGCCTAGACATGGGGGGGTGGGAAGAGCCCACGGGCGGGC
CGGGGGAGCTCCCCGCGGCAACCCCTCGAAGCTATGTGCTGCGCCAGGGG
GAGCTGGACCTGCTCAAC
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