mRNA_S-ischiensis_contig8.19382.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: F0XY90_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY90_AURAN) HSP 1 Score: 151 bits (381), Expect = 7.170e-40 Identity = 72/115 (62.61%), Postives = 90/115 (78.26%), Query Frame = 1
Query: 10 GIPLRNISPSSWESAV-----VGLFTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
GIP+ +ISPSSWESA+ +G +TLPCDKLDAL+AAA EIP LY+ EHP T+ LGAD+FLPIFIYVL NAD+ N++ +V LCDP K+L ETGY+VAT EAAV+H+L +
Sbjct: 585 GIPVHHISPSSWESAIYQLSNIGSYTLPCDKLDALLAAAKEIPQLYRIEHPGTENHLGADDFLPIFIYVLVNADIPNLSYLQKVLCTLCDPDKRLSETGYYVATFEAAVQHILEL 699
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A7S2BJV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJV4_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.410e-39 Identity = 68/116 (58.62%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 7 HGIPLRNISPSSWESAVVGL-----FTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
+GIP+ ISPSSWESA L FTLPCDKLDAL+AAA EIP LY +EHP T LGAD+FLPIFIYVL N+ + ++ + LCDP K+L ETGY++AT EAAVEH+ ++
Sbjct: 1 YGIPVHQISPSSWESATYHLSNIDSFTLPCDKLDALLAAAKEIPNLYLQEHPGTTEHLGADDFLPIFIYVLMNSKINELSYLSILLCNLCDPDKRLSETGYYLATFEAAVEHIKQL 116
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A7S3NP42_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NP42_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.020e-37 Identity = 69/115 (60.00%), Postives = 89/115 (77.39%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAV-----VGLFTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHV 330
+F+GIP+++ISPSSWESA+ +G +TLPCDKLDAL+AAA EIPALY+ EHP TD LGAD+FLPIFIYVL NA V ++ V LCDP K+L ETGY++++ EAAV ++
Sbjct: 672 TFYGIPIQHISPSSWESAIYQLANIGAYTLPCDKLDALLAAAKEIPALYRVEHPGTDTHLGADDFLPIFIYVLVNAKVPDLLHLQHVLCTLCDPDKRLSETGYYLSSFEAAVSYI 786
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: D7G700_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G700_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.620e-36 Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAV-----VGLFTLPCDKLDALVAAAHEIPALYKREHP-DTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
++HG+P NISPS W S++ VGLFTLPCDKLDAL+A AH+IPAL++ EHP D LGAD+FLPIFIYVL N+ V N+A+ + E LCDP+K +GE G+ VAT AA++H+ R
Sbjct: 1025 TYHGVPTSNISPSGWSSSMRLLQTVGLFTLPCDKLDALMAVAHDIPALHRVEHPGDNASSLGADDFLPIFIYVLVNSRVENLAAQSVILETLCDPKKMMGEAGFCVATFSAALQHLSRQ 1143
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A7S2G0S3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G0S3_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.060e-27 Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAVVGL-----FTLPCDKLDALVAAAHEIPALYKREHPDTDRP-LGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
+F GIP+ +ISPSSW S V L TLP DKL+AL+A + EIP LY EH D LGAD FLPIFIYVL N+ ++++ V LCDP K L E GY+ ATLEAAV H+ +M
Sbjct: 302 TFFGIPVDHISPSSWGSVVKMLSTMNSHTLPYDKLEALLAVSKEIPQLYSLEHADAKPAHLGADAFLPIFIYVLVNSKMSDVVYLSIVLRNLCDPDKLLSEAGYYAATLEAAVVHIQQM 420
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A7S3ZMF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMF8_9STRA) HSP 1 Score: 113 bits (283), Expect = 9.400e-27 Identity = 56/115 (48.70%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 10 GIPLRNISPSSWESAV-----VGLFTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
GI + SPS WE+AV VG +TLPCD+LD L+AAA EIP ++ EH + LG D+FLPIF+YV+ A + ++ + LCDP K+L ETGY+VAT EAAV H+ +
Sbjct: 491 GIAPEHASPSKWEAAVYRLATVGSYTLPCDRLDVLLAAAREIPVIFAAEHKG-EEVLGGDDFLPIFVYVVVQAGIPDLRYLQTLLSALCDPDKRLSETGYYVATFEAAVAHIREL 604
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A4D9DGA1_9STRA (VPS9 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGA1_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.160e-24 Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAVVGL-------FTLPCDKLDALVAAAHEIPALYKREHPD-TDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVLRM 339
SF GI + NIS SSWE+AV L TLP DKLDALVAA EI A ++REH D TD LGADEFLP+FIYV++ ++ + + + L DP + + E GY +A+LE A+E++L++
Sbjct: 805 SFFGIAVENISISSWEAAVGHLRRLSGEITTLPSDKLDALVAAVREIHACHRREHGDATDLHLGADEFLPVFIYVVSQCGISRLVALKNMLAALGDPARMMSEAGYCLASLEGAIEYLLQL 925
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A482SSU4_9ARCH (VPS9 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSU4_9ARCH) HSP 1 Score: 97.8 bits (242), Expect = 1.380e-21 Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAVVGL-----FTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVL 333
S++ IPL++ISP SW V LPCDK+ L+ + IP L++ EHP +++ LGAD+ PIFIY++ + + + + + ++LCDP E GY++ATL+AA++H+L
Sbjct: 255 SYYDIPLQHISPCSWFPIVTAFQDIKNIVLPCDKVQHLLQLSTAIPTLFRAEHPLSEQTLGADDLFPIFIYIVVQSKLPALWTLSQEMQQLCDPDHAFSEAGYYLATLQAALQHLL 370
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: A0A485LNM0_9STRA (Aste57867_21896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNM0_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.100e-19 Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 31 SPSSWESAVVGL-----FTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHVL 333
SP+ W AV L LP DKL L+ AA+ I ALY+ EH D D+ L D+FLPIFIYV+ +A + N +RV L DP+K++GE+GY++A+ EAA+EH++
Sbjct: 619 SPTQWGDAVRALREIDAMNLPVDKLRKLLDAANAIHALYQLEHGD-DKVLSGDDFLPIFIYVIVHAQLQNPLVLLRVLNVLSDPEKRMGESGYYLASYEAALEHLV 723
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Match: T0SIH1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0SIH1_SAPDV) HSP 1 Score: 91.3 bits (225), Expect = 7.040e-19 Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 SFHGIPLRNISPSSWESAV-----VGLFTLPCDKLDALVAAAHEIPALYKREHPDTDRPLGADEFLPIFIYVLANADVANIASHIRVFEKLCDPQKKLGETGYFVATLEAAVEHV 330
SF GIPL +S SSW + + TLP DK LV AA + +Y+ EH D L D+FLP+F+YV+ + +A+ ++ LCDP+K++G+ GY++A+ EAA+EH+
Sbjct: 578 SFFGIPLHRLSVSSWARPIETLRDIDAMTLPLDKHRRLVEAAMLVHIVYQEEHDGAD-VLSGDDFLPVFMYVIVQSRLAHPVVLLQALNVLCDPEKRIGQNGYYLASYEAALEHL 691 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19382.1 >prot_S-ischiensis_contig8.19382.1 ID=prot_S-ischiensis_contig8.19382.1|Name=mRNA_S-ischiensis_contig8.19382.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp SFHGIPLRNISPSSWESAVVGLFTLPCDKLDALVAAAHEIPALYKREHPDback to top mRNA from alignment at S-ischiensis_contig8:1077640..1081246- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19382.1 ID=mRNA_S-ischiensis_contig8.19382.1|Name=mRNA_S-ischiensis_contig8.19382.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3607bp|location=Sequence derived from alignment at S-ischiensis_contig8:1077640..1081246- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:1077640..1081246- >mRNA_S-ischiensis_contig8.19382.1 ID=mRNA_S-ischiensis_contig8.19382.1|Name=mRNA_S-ischiensis_contig8.19382.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig8:1077640..1081246- (Schizocladia ischiensis KU_0333)back to top |