mRNA_S-ischiensis_contig8.19371.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19371.1
Unique NamemRNA_S-ischiensis_contig8.19371.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: D7FM31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM31_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 9.100e-17
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIK 216
            ELS+K R+E TP ELE +RRERNR+HAKRTRDRKKLHL+ATE  IARLE+EN KLRD +K
Sbjct:  491 ELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEEMIARLERENRKLRDSMK 550
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A6H5L0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-16
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIK 216
            ELS+K R+E TP ELE +RRERNR+HAKRTRDRKKLHL+ATE  IARLE+EN KLRD +K
Sbjct:  537 ELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEEMIARLERENRKLRDIMK 596
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A6U2ACZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ACZ3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.150e-11
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIKGL 222
            EL  KDR++ TPAEL+ +RRERNR+HAKRTRDRK++ ++  E  I +LE EN  L+ H++GL
Sbjct:  178 ELLSKDRSKCTPAELDRIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLESENGLLQGHLEGL 239
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.700e-11
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIKGLD 225
            EL  KDR++ TPAEL+ +RRERNR+HAKRTRDRK++ ++  E  I +LE EN  L+ H+  LD
Sbjct:  146 ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLD 208
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.010e-10
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIKGLD 225
            EL  KDR++ TPAEL+ +RRERNR+HAKRTRDRK++ ++  E  I +LE EN  L+ H+  LD
Sbjct:  146 ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLD 208
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.080e-10
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIKGLD 225
            EL  KDR++ TPAEL+ +RRERNR+HAKRTRDRK++ ++  E  I +LE EN  L+ H+  LD
Sbjct:  318 ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLD 380
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: K0SXX4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SXX4_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 2.060e-10
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   37 ELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHIKGLD 225
            +L  KDRA  TPAEL+ +RRERNR+HAKRTRDRK++ ++  EG    LE+EN  L+ H   L+
Sbjct:  299 QLLGKDRAHCTPAELDQIRRERNRMHAKRTRDRKRIFMEEMEGMCKTLEEENALLQSHYDELE 361
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A7S2RDJ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDJ2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.140e-10
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   55 RAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHI 213
            R + TPAE E +RRERNR+HAKRTRDRKKL L+ +E  IA +E+EN KLRD +
Sbjct:  105 RGKYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFL 157
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BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: B8C9H9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9H9_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 5.240e-10
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   49 KDRAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHI 213
            KDRA  +PAEL+ +RRERNR+HAKRTRDRK++ ++  E  I +LE EN  L+DHI
Sbjct:  265 KDRAACSPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEDENALLQDHI 319
[Close]
BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.150e-10
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   55 RAELTPAELEVLRRERNRLHAKRTRDRKKLHLQATEGTIARLEQENCKLRDHI 213
            R + TPAE E +RRERNR+HAKRTRDRKKL L+ +E  IA +E+EN KLRD +
Sbjct:  309 RGKYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFL 361
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM31_ECTSI9.100e-1775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E2_9PHAE1.700e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U2ACZ3_9STRA4.150e-1156.45Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4VPU5_9STRA6.700e-1155.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4W4V3_9STRA1.010e-1055.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RSS5_9STRA1.080e-1055.56Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
K0SXX4_THAOC2.060e-1053.97Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2RDJ2_9STRA4.140e-1064.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8C9H9_THAPS5.240e-1060.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2REX0_9STRA7.150e-1064.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:987867..988096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D7FM31
EggNOG free text desc.basic region leucin zipper
EggNOG OGs2CYZ1@1,2S7C7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-01_010470.1
Exons1
Model size231
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817277.0380175-CDS-S-ischiensis_contig8:987866..9880941622817277.0380175-CDS-S-ischiensis_contig8:987866..988094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 987867..988094 +
1695740988.9622197-CDS-S-ischiensis_contig8:987866..9880941695740988.9622197-CDS-S-ischiensis_contig8:987866..988094Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 987867..988094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19371.1prot_S-ischiensis_contig8.19371.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 987867..988094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19371.1

>prot_S-ischiensis_contig8.19371.1 ID=prot_S-ischiensis_contig8.19371.1|Name=mRNA_S-ischiensis_contig8.19371.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
GVEEDKERRQIRELSKKDRAELTPAELEVLRRERNRLHAKRTRDRKKLHL
QATEGTIARLEQENCKLRDHIKGLDQ
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mRNA from alignment at S-ischiensis_contig8:987867..988096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19371.1 ID=mRNA_S-ischiensis_contig8.19371.1|Name=mRNA_S-ischiensis_contig8.19371.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=230bp|location=Sequence derived from alignment at S-ischiensis_contig8:987867..988096+ (Schizocladia ischiensis KU_0333)
GGGGTGGAGGAGGACAAGGAGCGGCGGCAGATCCGGGAGCTGTCGAAAAA
AGACCGGGCTGAGCTGACGCCGGCGGAGCTGGAGGTGCTGCGGCGGGAGC
GCAACCGCCTGCACGCCAAGCGGACGCGCGACCGCAAGAAGCTGCACCTG
CAGGCCACGGAGGGCACCATCGCTCGTCTGGAGCAGGAGAACTGCAAGCT
CCGGGACCACATCAAGGGTCTCGACCAGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:987867..988096+

>mRNA_S-ischiensis_contig8.19371.1 ID=mRNA_S-ischiensis_contig8.19371.1|Name=mRNA_S-ischiensis_contig8.19371.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig8:987867..988096+ (Schizocladia ischiensis KU_0333)
GGGGTGGAGGAGGACAAGGAGCGGCGGCAGATCCGGGAGCTGTCGAAAAA
AGACCGGGCTGAGCTGACGCCGGCGGAGCTGGAGGTGCTGCGGCGGGAGC
GCAACCGCCTGCACGCCAAGCGGACGCGCGACCGCAAGAAGCTGCACCTG
CAGGCCACGGAGGGCACCATCGCTCGTCTGGAGCAGGAGAACTGCAAGCT
CCGGGACCACATCAAGGGTCTCGACCAGGGGGTGGAGGAGGACAAGGAGC
GGCGGCAGATCCGGGAGCTGTCGAAAAAAGACCGGGCTGAGCTGACGCCG
GCGGAGCTGGAGGTGCTGCGGCGGGAGCGCAACCGCCTGCACGCCAAGCG
GACGCGCGACCGCAAGAAGCTGCACCTGCAGGCCACGGAGGGCACCATCG
CTCGTCTGGAGCAGGAGAACTGCAAGCTCCGGGACCACATCAAGGGTCTC
GACCAG
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