mRNA_S-ischiensis_contig8.19363.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19363.1
Unique NamemRNA_S-ischiensis_contig8.19363.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:943925..947302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size877
Cds size876
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19363.1prot_S-ischiensis_contig8.19363.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 943925..947302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.2772927-CDS-S-ischiensis_contig8:943924..9439991622817257.2772927-CDS-S-ischiensis_contig8:943924..943999Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 943925..943999 -
1695740974.8177023-CDS-S-ischiensis_contig8:943924..9439991695740974.8177023-CDS-S-ischiensis_contig8:943924..943999Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 943925..943999 -
1622817257.28853-CDS-S-ischiensis_contig8:945703..9459851622817257.28853-CDS-S-ischiensis_contig8:945703..945985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 945704..945985 -
1695740974.8279028-CDS-S-ischiensis_contig8:945703..9459851695740974.8279028-CDS-S-ischiensis_contig8:945703..945985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 945704..945985 -
1622817257.2997994-CDS-S-ischiensis_contig8:946499..9468211622817257.2997994-CDS-S-ischiensis_contig8:946499..946821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 946500..946821 -
1695740974.8376923-CDS-S-ischiensis_contig8:946499..9468211695740974.8376923-CDS-S-ischiensis_contig8:946499..946821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 946500..946821 -
1622817257.311806-CDS-S-ischiensis_contig8:947105..9473021622817257.311806-CDS-S-ischiensis_contig8:947105..947302Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 947106..947302 -
1695740974.84718-CDS-S-ischiensis_contig8:947105..9473021695740974.84718-CDS-S-ischiensis_contig8:947105..947302Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 947106..947302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19363.1

>prot_S-ischiensis_contig8.19363.1 ID=prot_S-ischiensis_contig8.19363.1|Name=mRNA_S-ischiensis_contig8.19363.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=292bp
MNTTPAEATAAEGLQVDVGRGRPDGRPPGRPPRSPGHSRSASPLGSPDSP
GSPGSPDRSISRGRNRMSFEKALEQEREKSKQDEEERRKSNVPRLLSKGG
KSQSFQLALEETRAKKERERISTAAAKLDEMKILRKDSRSVMEMNAELEA
RAKRTSKASVPVTPEEYYRLVMEQAAKAKKGQHAGDTSRFFRRALSKIST
RQVGGADKGRDRLMTSPTSPHTSDEAPTSPKSDDEDGEVGVVSMEGKRRF
LQGWADVQNANGGPVTQAAGLEVLHNLGVSAPGKGGETGEKE
back to top

mRNA from alignment at S-ischiensis_contig8:943925..947302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19363.1 ID=mRNA_S-ischiensis_contig8.19363.1|Name=mRNA_S-ischiensis_contig8.19363.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3378bp|location=Sequence derived from alignment at S-ischiensis_contig8:943925..947302- (Schizocladia ischiensis KU_0333)
ATGAATACCACACCGGCTGAAGCCACGGCTGCCGAGGGCTTGCAGGTCGA
TGTGGGTCGAGGGCGCCCTGACGGTCGACCGCCTGGACGTCCACCGAGGA
GCCCTGGCCATTCTCGCTCGGCCAGTCCGTTGGGGTCGCCGGATTCGCCG
GGGTCGCCGGGCTCACCCGACAGGTCCATTTCGCGGGGGAGGAACAGGTG
GGGGCGAGAACTTGGCGGTCGTGCAGTGCTCGACGACGCCATTTCGAGTA
CTCGTTCTTCACGAACTAGGCCTCACTCGGCTACCAGGCGCTATCAGCTA
ATGCATATGCAAGTGCAGATTGTCACTACGAACTACGGTACAGTAGTGCA
GTGCTGTACCCGTTATTTTGCTCAAACATAGTTGGGGGTGCAACCGGAGG
GCCCCCACGTGATCCTACATGCCACGCTGCGGGACCTCTGCTGACGCCAC
CGGGGGATAATTTCGTGGTTCCCTGCGACAGAATGAGTTTTGAGAAGGCG
TTGGAGCAGGAACGGGAGAAGAGCAAGCAGGACGAGGAGGAGCGGCGCAA
GAGCAACGTCCCGCGGTTGCTGTCCAAGGGGGGGAAATCCCAGTCGTTCC
AGCTGGCGCTCGAGGAGACGAGGGCAAAAAAAGAGCGGGAACGCATCTCG
ACGGCCGCGGCCAAGCTGGACGAGATGAAAATCCTCCGCAAGGACTCCAG
GTCTGTCATGGAGATGAACGCTGAGCTCGAGGCGAGGGCCAAGAGGACAA
GCAAGGCCAGCGTGCCGGTGACCCCGGAGGAATATTACCGCCTGGTCATG
GAGGTAAGCCCTGCGTGCGCACAGGGCGGTGGGCCCTGCCGCCGCACGGG
GCACATGGTACTCCACTTACAGTACGTTTCCGGTAGTCAGGGCCTTGGAC
TGCTCCCTCGCAACTTTGCCAGCCCATGCATTTGGCAGCTGTCCACTCAA
GGCGCCACGGCCCGCCTGCCCGAGCTATGTGACGGGGCACCGTGCCGCCC
CCGCCAACACCACCACCACCACCACCACCACCACCACCACCACCACCACC
ACCACCACCACCACCAACAACAACAACAACAGCAGCAACAACAACAATAA
CCACCACCACCCACCCACCCACCGCCACCACCACCACCATCACCACCAAC
AACCACCACCACCCACCCACCCACCACCGCCACCACCACCACCACCAGTA
TCAGCACCAACACCAACACCACCAACATCAACACGACCACCACCACCGCT
GCCGCCGCTGCCACCACCATCACCGCCGCCGCTGCCACCACCATCACCGC
CGCCGCCACGTCTGCAGCAAGCCGCCAAGGCCAAGAAGGGGCAACACGCG
GGCGACACCTCCCGGTTCTTTAGGCGTGCTCTCAGCAAGATTTCCACCAG
GCAGGTTGGGGGGGCCGACAAGGGGCGGGACAGACTCATGACGAGCCCCA
CGAGCCCCCACACGTCGGATGAAGCCCCAACTTCCCCCAAGTCAGACGAC
GAGGATGGTGAGGTGGGCGTGGTCTCAATGGAGGGCAAGCGTCGGTTCCT
GCAGGGGTGGGCGGACGTGCAGAACGCAAATGGCGGGCCAGTGACGCAGG
TAAGCCAAAGTACAAGTACCATACCTAGAGCAGGTTTTTACAGAGGCGCC
CCCCCCGCGTAAAACTACAGTATGTACTGCGCTACAGTAGCTGCAAGTAT
GTCTGTTCATAAATTTCTTTTTCTAACACAGAAACTTCTTCATTTAGACA
AAGGCCTTGCTCGGCATGAGACCTGGGCGACTAGCATGTCTGTGGTGCAA
AAGAAGTTTGTGGCGTTGAGAAATGCTGTCGGGAAAACCAGACATTGGTA
GCGCGGGCCGGATTGCTAAGGGCCTGTTGCGAGCGTCCTGTTTGCTCACC
CGGGCCGCTGTGGCCGATCTCGCCTTGAACATCCACGTGTCTTCTTGGAA
GACTTCTTTTTTGCAGTACAAATACTCACGGGTAGGTACTGTAACTCCTT
CCAAGTGCTGTGCTTGGCGATCCATCCCTAGCTCAACCCTTTTACCCCTG
CTAAATTGGACTTACACACTAAAACCCTATGACAATACGGACCTCAGGGG
TGAAAGGGCTAAGACGACCCGCACGTGTCTGAGAAGCGCGCGGGTTTTCT
GCTGGGTTTTCTGCAGCGACTGACTGACTGCCCATGCGTCTGACCTCACA
AACATTCGCCACGGGCGAGGTATATCGCTTGGGGGGCTGTGCCACGGCGA
GGGCAAAAGAACCACCCCGCCTTTTGGGAAAGAGCCGACTATTACAACCT
CGCGGACAGGTGTCTTTTTGCGTTGGCAACATCATACTGCGTGTGTTGCC
GCAGCACGGTGCGCCAGTACGCAAGGCTCGAGCCAGAGCAAGCTGTTCGA
GGACGGTGGCGGCACACCACACTAGAGTACTTGGAAGTATTTCGGAAGTA
CTTGGAAGTACTTGGAACTTGGGGAAGTACACATACTACGTATGTAGTAC
CCCTGGAAACTTGTACATTCTCAATACCCCATACCTTACAGTGCACGGTA
CCGTCATTCTGAAAGGGCTACGCCGCGAAACCCTGGGCCCCCCAAAACAC
TGCGGGCCAAAATGCTCTCGCGGCTCAGTCCCTTGTGTGTGGGCGTGCGC
CTCCCCACCAGGGAGCAATCCATTTTTCTTGTCCGCCAGAACCGGCACCC
CCCAAGCTCCCCCCCCCCGCCCTTGCATGTACTTCGAAGTACAAAGTATG
CCTGTCAGTGATGGTATTCCTGTGACCATTGGAGCGGGGGGGTGGCTGTT
TTTCGGCCGCTTTTGAAATTGATTGAGGCGATTGGCTGGCCCCGGTTGCC
ACCCGTTGGCCGAACGAGAGGAGTGTGGCACAAGCACTTGATTGATACTG
TGGCAGTACCGTACTGGATGGAAACAATGCATACTCATACGCTTTTTCCT
TCGGGACTTGCTGTGGGATAGCACACAAACAGTGTGCCACAAGTCCTTCA
AGGGCAAACGCAACTGACCAGTGCATTGGCGTGCGTGGCTGTCACTGCCG
CCACGGCCGAGTTTTTCTGTCCTGTGCAATGCCTTCATTACCTGTTTGAA
GAGGGTGCCGGTGCACTACTGTGCTGTAGAGCTCTACGCTGCACTGCAGC
AAGTGCTTTGTGTGGATATACTTTTGAAGTGAAGTACTTCGAACTATATA
TCGTGTATCAACGTCCTCCATGCGTAAGGCATACCACTTCTCACACGTCT
GCGCGCCGCTGCCGCCGCCGCCGCCGCTGCCTCTACTGCTGCCACGCTCA
CAGGCGGCGGGGCTGGAGGTGTTGCATAACTTGGGTGTCTCCGCGCCAGG
CAAGGGCGGGGAGACGGGCGAGAAGGAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:943925..947302-

>mRNA_S-ischiensis_contig8.19363.1 ID=mRNA_S-ischiensis_contig8.19363.1|Name=mRNA_S-ischiensis_contig8.19363.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1752bp|location=Sequence derived from alignment at S-ischiensis_contig8:943925..947302- (Schizocladia ischiensis KU_0333)
ATGAATACCACACCGGCTGAAGCCACGGCTGCCGAGGGCTTGCAGGTCGA
TGTGGGTCGAGGGCGCCCTGACGGTCGACCGCCTGGACGTCCACCGAGGA
GCCCTGGCCATTCTCGCTCGGCCAGTCCGTTGGGGTCGCCGGATTCGCCG
GGGTCGCCGGGCTCACCCGACAGGTCCATTTCGCGGGGGAGGAACAGATG
AATACCACACCGGCTGAAGCCACGGCTGCCGAGGGCTTGCAGGTCGATGT
GGGTCGAGGGCGCCCTGACGGTCGACCGCCTGGACGTCCACCGAGGAGCC
CTGGCCATTCTCGCTCGGCCAGTCCGTTGGGGTCGCCGGATTCGCCGGGG
TCGCCGGGCTCACCCGACAGGTCCATTTCGCGGGGGAGGAACAGAATGAG
TTTTGAGAAGGCGTTGGAGCAGGAACGGGAGAAGAGCAAGCAGGACGAGG
AGGAGCGGCGCAAGAGCAACGTCCCGCGGTTGCTGTCCAAGGGGGGGAAA
TCCCAGTCGTTCCAGCTGGCGCTCGAGGAGACGAGGGCAAAAAAAGAGCG
GGAACGCATCTCGACGGCCGCGGCCAAGCTGGACGAGATGAAAATCCTCC
GCAAGGACTCCAGGTCTGTCATGGAGATGAACGCTGAGCTCGAGGCGAGG
GCCAAGAGGACAAGCAAGGCCAGCGTGCCGGTGACCCCGGAGGAATATTA
CCGCCTGGTCATGGAGAATGAGTTTTGAGAAGGCGTTGGAGCAGGAACGG
GAGAAGAGCAAGCAGGACGAGGAGGAGCGGCGCAAGAGCAACGTCCCGCG
GTTGCTGTCCAAGGGGGGGAAATCCCAGTCGTTCCAGCTGGCGCTCGAGG
AGACGAGGGCAAAAAAAGAGCGGGAACGCATCTCGACGGCCGCGGCCAAG
CTGGACGAGATGAAAATCCTCCGCAAGGACTCCAGGTCTGTCATGGAGAT
GAACGCTGAGCTCGAGGCGAGGGCCAAGAGGACAAGCAAGGCCAGCGTGC
CGGTGACCCCGGAGGAATATTACCGCCTGGTCATGGAGCAAGCCGCCAAG
GCCAAGAAGGGGCAACACGCGGGCGACACCTCCCGGTTCTTTAGGCGTGC
TCTCAGCAAGATTTCCACCAGGCAGGTTGGGGGGGCCGACAAGGGGCGGG
ACAGACTCATGACGAGCCCCACGAGCCCCCACACGTCGGATGAAGCCCCA
ACTTCCCCCAAGTCAGACGACGAGGATGGTGAGGTGGGCGTGGTCTCAAT
GGAGGGCAAGCGTCGGTTCCTGCAGGGGTGGGCGGACGTGCAGAACGCAA
ATGGCGGGCCAGTGACGCAGCAAGCCGCCAAGGCCAAGAAGGGGCAACAC
GCGGGCGACACCTCCCGGTTCTTTAGGCGTGCTCTCAGCAAGATTTCCAC
CAGGCAGGTTGGGGGGGCCGACAAGGGGCGGGACAGACTCATGACGAGCC
CCACGAGCCCCCACACGTCGGATGAAGCCCCAACTTCCCCCAAGTCAGAC
GACGAGGATGGTGAGGTGGGCGTGGTCTCAATGGAGGGCAAGCGTCGGTT
CCTGCAGGGGTGGGCGGACGTGCAGAACGCAAATGGCGGGCCAGTGACGC
AGGCGGCGGGGCTGGAGGTGTTGCATAACTTGGGTGTCTCCGCGCCAGGC
AAGGGCGGGGAGACGGGCGAGAAGGAGGCGGCGGGGCTGGAGGTGTTGCA
TAACTTGGGTGTCTCCGCGCCAGGCAAGGGCGGGGAGACGGGCGAGAAGG
AG
back to top