mRNA_S-ischiensis_contig8.19357.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19357.1
Unique NamemRNA_S-ischiensis_contig8.19357.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:899335..901257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size859
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817257.2325196-CDS-S-ischiensis_contig8:899334..8998251622817257.2325196-CDS-S-ischiensis_contig8:899334..899825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 899335..899825 +
1695740974.7973218-CDS-S-ischiensis_contig8:899334..8998251695740974.7973218-CDS-S-ischiensis_contig8:899334..899825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 899335..899825 +
1622817257.245862-CDS-S-ischiensis_contig8:900891..9012551622817257.245862-CDS-S-ischiensis_contig8:900891..901255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 900892..901255 +
1695740974.8076658-CDS-S-ischiensis_contig8:900891..9012551695740974.8076658-CDS-S-ischiensis_contig8:900891..901255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 900892..901255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19357.1prot_S-ischiensis_contig8.19357.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 899335..901255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19357.1

>prot_S-ischiensis_contig8.19357.1 ID=prot_S-ischiensis_contig8.19357.1|Name=mRNA_S-ischiensis_contig8.19357.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=285bp
DAEARRRAVAAALARAQWRAEAGAFAAAARDLDQFAARLVQGCARWEGKV
TSRVSLVPGDGGSGCGRRGEGGGSSSPEHRGEGAAAAAAETAADLGMGMT
CAGDPPRGETARGVCGSREAWASAADVFLAAAAYFEAGDAPVQALGSLAK
AAEALAGGGRDYQRAKDIFARASRAWAGGSPGGGSGGGGAPSPGSDVRAT
FTAMESRSLGLSAVLCALAANDGVGAAALLASMPWLEASSGALAHGAPGH
RGTMGWRARSAAAAAASPEGTFAAEVVEAALAMDA
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mRNA from alignment at S-ischiensis_contig8:899335..901257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19357.1 ID=mRNA_S-ischiensis_contig8.19357.1|Name=mRNA_S-ischiensis_contig8.19357.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1923bp|location=Sequence derived from alignment at S-ischiensis_contig8:899335..901257+ (Schizocladia ischiensis KU_0333)
GACGCGGAGGCTCGGCGCCGGGCGGTGGCGGCAGCCCTGGCCCGGGCCCA
GTGGCGGGCGGAGGCCGGGGCGTTCGCGGCGGCGGCGCGGGACCTGGACC
AGTTCGCCGCACGCCTTGTCCAGGGCTGCGCTCGCTGGGAGGGAAAAGTG
ACTTCAAGAGTCAGCCTGGTCCCCGGCGACGGCGGCAGCGGCTGTGGTCG
CAGGGGGGAAGGGGGCGGTAGTAGTAGCCCCGAGCACCGTGGCGAGGGCG
CCGCCGCCGCCGCCGCCGAGACGGCTGCGGACTTGGGCATGGGCATGACC
TGTGCCGGTGACCCCCCCCGGGGCGAAACTGCCCGAGGGGTTTGTGGTTC
CAGGGAGGCGTGGGCGAGCGCCGCGGACGTGTTCCTGGCCGCGGCGGCGT
ACTTCGAGGCCGGGGACGCGCCCGTGCAGGCCTTGGGGAGTCTCGCAAAG
GCCGCCGAGGCGCTGGCCGGGGGCGGCAGGGACTATCAAAGGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGTGCGTTTGTGTGCGTGTGTGTATGCGTGCA
CATGTGTGTGATAGTAGGGCGTGCGGTCATATATGAGCCCTTCCTGAATT
TTTCCCCGAGCGTGTGGTGACTGTTTAGAGTAGTCGTCTTCCTTGACAGC
ACGGGATAGCGCACAATGTCACGAGGCAGCAGCCCGGCGGCTTGTTACTG
CCCTAGCCAGTGGCCGGCCTGCGGCCAGCCGCCAGGAGTGTGCCCGTAGC
CCACGCGCTGTGGTACTTCGAAGTACACTCCAGTTGTGACAGTAGAGTAC
ATACTTGAACACCAATGTTCGTGCGCCATGTCTCTGTCTCGACCGAGGCG
CGTGGTCAATGGTCTCAGGACTACGGCAAGCACAATGTGAGTACTGTGCA
TGTGTGTGTGTGTGTGTGTGTGTGTCTCCGTACGGGGATGTGCTTGAGGC
AGGGCAGTACGAGCACTGTGGTTGCGTACCCGGTACAGTAGAGTAGAGGA
TACTTGCGCGAACACGCAGAAGCGCTTCCGGGCATAGGGCACCCTGTCGA
AGAGCCGCTGGCGGCGGCGCATGTACTACTTTACTACTGCACAGGAAATG
TGCAGGTACAGTACTTACTACTGCTGCACGCGTGCACCTCCTCACGTGAT
GCTTGCTGTGGTCCCGTGGCGATTGATTTGACCACGTGCCCCGTCCAAGG
TTGGAGTGATCCGCTGTACTGTACTTTGGCAATACAGTACTCGCACACTA
GGTACTTACGTGCTCTCCCTCTGTTTTCGGTGCGGTGTGCCTCGGGGTGT
GCACATGCCCCCAGGCAAAGCGCCAGCCAGCCAGCCAGCCAGCCCGCAGT
ACAAGTACCTATCCGAATGCTTAGCAAAGTTCCTGGAGATAGGTACTACT
TCTAGTACGTGCTCGCACGGCAAGGAGGTGTGTGTACTTGGATACATACA
GGTATCTTTGGTCTCAACACCCCCGTCCCCCCCCTCCCCCCCCCTCTCCT
CACCTCCCCCGTGACGAAGACAGCCCCCCCCCCCCGCCCCTGCGGCCGTC
CAAACAGGGCAAAGGACATCTTCGCGCGCGCATCCCGCGCCTGGGCTGGC
GGCAGCCCCGGGGGCGGGAGCGGAGGAGGCGGGGCACCTTCGCCAGGTAG
CGACGTCCGGGCAACCTTCACGGCCATGGAGTCCCGGTCCCTGGGACTCT
CGGCGGTCCTGTGCGCCCTGGCCGCGAACGACGGAGTGGGGGCGGCCGCC
CTGCTGGCGAGCATGCCTTGGCTAGAGGCCTCCTCTGGCGCCCTTGCCCA
TGGTGCCCCCGGGCACCGGGGCACCATGGGGTGGCGTGCGCGGTCGGCGG
CGGCGGCGGCGGCGTCGCCGGAGGGCACGTTCGCGGCGGAGGTTGTGGAG
GCGGCGCTGGCCATGGACGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:899335..901257+

>mRNA_S-ischiensis_contig8.19357.1 ID=mRNA_S-ischiensis_contig8.19357.1|Name=mRNA_S-ischiensis_contig8.19357.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig8:899335..901257+ (Schizocladia ischiensis KU_0333)
GACGCGGAGGCTCGGCGCCGGGCGGTGGCGGCAGCCCTGGCCCGGGCCCA
GTGGCGGGCGGAGGCCGGGGCGTTCGCGGCGGCGGCGCGGGACCTGGACC
AGTTCGCCGCACGCCTTGTCCAGGGCTGCGCTCGCTGGGAGGGAAAAGTG
ACTTCAAGAGTCAGCCTGGTCCCCGGCGACGGCGGCAGCGGCTGTGGTCG
CAGGGGGGAAGGGGGCGGTAGTAGTAGCCCCGAGCACCGTGGCGAGGGCG
CCGCCGCCGCCGCCGCCGAGACGGCTGCGGACTTGGGCATGGGCATGACC
TGTGCCGGTGACCCCCCCCGGGGCGAAACTGCCCGAGGGGTTTGTGGTTC
CAGGGAGGCGTGGGCGAGCGCCGCGGACGTGTTCCTGGCCGCGGCGGCGT
ACTTCGAGGCCGGGGACGCGCCCGTGCAGGCCTTGGGGAGTCTCGCAAAG
GCCGCCGAGGCGCTGGCCGGGGGCGGCAGGGACTATCAAAGGACGCGGAG
GCTCGGCGCCGGGCGGTGGCGGCAGCCCTGGCCCGGGCCCAGTGGCGGGC
GGAGGCCGGGGCGTTCGCGGCGGCGGCGCGGGACCTGGACCAGTTCGCCG
CACGCCTTGTCCAGGGCTGCGCTCGCTGGGAGGGAAAAGTGACTTCAAGA
GTCAGCCTGGTCCCCGGCGACGGCGGCAGCGGCTGTGGTCGCAGGGGGGA
AGGGGGCGGTAGTAGTAGCCCCGAGCACCGTGGCGAGGGCGCCGCCGCCG
CCGCCGCCGAGACGGCTGCGGACTTGGGCATGGGCATGACCTGTGCCGGT
GACCCCCCCCGGGGCGAAACTGCCCGAGGGGTTTGTGGTTCCAGGGAGGC
GTGGGCGAGCGCCGCGGACGTGTTCCTGGCCGCGGCGGCGTACTTCGAGG
CCGGGGACGCGCCCGTGCAGGCCTTGGGGAGTCTCGCAAAGGCCGCCGAG
GCGCTGGCCGGGGGCGGCAGGGACTATCAAAGGGCAAAGGACATCTTCGC
GCGCGCATCCCGCGCCTGGGCTGGCGGCAGCCCCGGGGGCGGGAGCGGAG
GAGGCGGGGCACCTTCGCCAGGTAGCGACGTCCGGGCAACCTTCACGGCC
ATGGAGTCCCGGTCCCTGGGACTCTCGGCGGTCCTGTGCGCCCTGGCCGC
GAACGACGGAGTGGGGGCGGCCGCCCTGCTGGCGAGCATGCCTTGGCTAG
AGGCCTCCTCTGGCGCCCTTGCCCATGGTGCCCCCGGGCACCGGGGCACC
ATGGGGTGGCGTGCGCGGTCGGCGGCGGCGGCGGCGGCGTCGCCGGAGGG
CACGTTCGCGGCGGAGGTTGTGGAGGCGGCGCTGGCCATGGACGCGGGCA
AAGGACATCTTCGCGCGCGCATCCCGCGCCTGGGCTGGCGGCAGCCCCGG
GGGCGGGAGCGGAGGAGGCGGGGCACCTTCGCCAGGTAGCGACGTCCGGG
CAACCTTCACGGCCATGGAGTCCCGGTCCCTGGGACTCTCGGCGGTCCTG
TGCGCCCTGGCCGCGAACGACGGAGTGGGGGCGGCCGCCCTGCTGGCGAG
CATGCCTTGGCTAGAGGCCTCCTCTGGCGCCCTTGCCCATGGTGCCCCCG
GGCACCGGGGCACCATGGGGTGGCGTGCGCGGTCGGCGGCGGCGGCGGCG
GCGTCGCCGGAGGGCACGTTCGCGGCGGAGGTTGTGGAGGCGGCGCTGGC
CATGGACGCG
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