mRNA_S-ischiensis_contig8.19347.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI) HSP 1 Score: 348 bits (893), Expect = 1.320e-113 Identity = 166/237 (70.04%), Postives = 197/237 (83.12%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLTTKTLALP 711
RRQCE MILDGRVRVNGK+V+ELGVKV+PRRD V+VDGNRV +R E WVAL+KPKG+I + DE GR T V IP MRL+PVGRLDRDS GLLLLTNENSW+N LTHPS+GHEKTYRV GYP+ E + +TQGML+DGDPNPTRPC VEV++YD RTR TT+D+ IREG+NRQIRRMFEG+GH V ITR++HGP+R+K+L+ GEWR+L++WEI+KLKNLTTKTL P
Sbjct: 49 RRQCEQMILDGRVRVNGKMVKELGVKVNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVASIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELEQWEIEKLKNLTTKTLKSP 285
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE) HSP 1 Score: 348 bits (894), Expect = 7.780e-113 Identity = 166/237 (70.04%), Postives = 197/237 (83.12%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLTTKTLALP 711
RRQCE MILDGRVRVNGK+V+ELGVKV+PRRD V+VDGNRV +R E WVAL+KPKG+I + DE GR T V IP MRL+PVGRLDRDS GLLLLTNENSW+N LTHPS+GHEKTYRV GYP+ E + +TQGML+DGDPNPTRPC VEV++YD RTR TT+D+ IREG+NRQIRRMFEG+GH V ITR++HGP+R+K+L+ GEWR+L++WEI+KLKNLTTKTL P
Sbjct: 127 RRQCEQMILDGRVRVNGKMVKELGVKVNPRRDQVHVDGNRVSMRPDSEIKWVALNKPKGVICTVSDELGRPTAVGSIPRGLEMRLVPVGRLDRDSCGLLLLTNENSWINPLTHPSYGHEKTYRVALTSGYPTTEEWDVLTQGMLLDGDPNPTRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLEQWEIEKLKNLTTKTLKSP 363
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA) HSP 1 Score: 323 bits (828), Expect = 2.410e-105 Identity = 148/227 (65.20%), Postives = 187/227 (82.38%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLK 681
RRQCE MILDGRVRVNGK+V LG +VDPR+D + VDG +V LR++EET WVA+HKPKG+ITST DE GR+TVVDLIPGA+RMRLLPVGRLDRDS+GLLLLTN+N+WVN LTHPS+GHEK YRV GYPS A++ +T+GM+++G+ PT+PC +E++ YDER + +DV +REG+NRQIRRMFE +GHPV ITR+ HGP+ +K L+ GEWR L E+++LK
Sbjct: 53 RRQCEQMILDGRVRVNGKIVSSLGTRVDPRKDDLLVDGQKVALRSREETAWVAIHKPKGVITSTNDELGRRTVVDLIPGADRMRLLPVGRLDRDSAGLLLLTNDNAWVNVLTHPSYGHEKLYRVAITEGYPSPPAWKKVTEGMMLEGETAPTQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRALTASEVERLK 279
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A0G4ETA8_VITBC (S4 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETA8_VITBC) HSP 1 Score: 237 bits (605), Expect = 5.540e-71 Identity = 121/230 (52.61%), Postives = 160/230 (69.57%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRT--TMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQ-GEWRKLDEWEIKKLK 681
RR E MILDGRVRVNG VV +LGVKVD D V VDG ++ +R EE W+A+HKPKG I S D++ RKTV DL+P AER+RLLPVGRLDRDSSGLLLLTN+N W++ LTHPS+GH+K Y V + G P + + +G+L+ G+ T P + V + +R++ T++VT+REGRNRQ+RRM E +GHPV I R+ GP+ +K + G+WR+L E+ LK
Sbjct: 151 RRAAEEMILDGRVRVNGVVVTDLGVKVDALGDRVTVDGRKIAVRPPEEIKWIAVHKPKGYICSMNDDRDRKTVKDLVPMAERLRLLPVGRLDRDSSGLLLLTNDNKWLHPLTHPSYGHQKRYIVTVDNGTPKYDVLNELAEGVLLPGERTKTAPVSIGVFFEPKTSRKSFGTLEVTLREGRNRQLRRMMEFIGHPVLNIRRVDFGPLTLKGITTPGQWRELKPSEVFMLK 380
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A7S2WX07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX07_9STRA) HSP 1 Score: 233 bits (594), Expect = 2.820e-69 Identity = 120/231 (51.95%), Postives = 159/231 (68.83%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLTT 693
RR+ E I DGRV VN ++V ELG KVDP++D V VDG V R EE WVA++KPKG++ + DEK RKTV+D +PGA R RLLPVGRLDR+S+GLLLLTN+NSW++ LTHPS G K YR+V E G+ S++ R I QG+ + + PC VE +D D R R T++ + ++EGRNRQIRRM + VG PV +TR + G V ++ L G+WR+L + E+ LK T
Sbjct: 105 RREAERYIEDGRVTVNERLVTELGTKVDPQKDRVTVDGELVSQRPVEEIRWVAMYKPKGVVCTMEDEKDRKTVMDALPGASRARLLPVGRLDRNSAGLLLLTNDNSWLHKLTHPSHGCTKMYRIVVE-GFLSNDVLRRIAQGLQLPDEERKLSPCAVEFVDQDLRQRTTSLRIVLQEGRNRQIRRMMDFVGFPVKSLTRTSVGSVGLRDLSPGDWRELSKKEVDALKRTCT 334
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A0G4HIW2_9ALVE (S4 domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HIW2_9ALVE) HSP 1 Score: 232 bits (592), Expect = 1.540e-68 Identity = 115/230 (50.00%), Postives = 159/230 (69.13%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRT---TMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLK 681
RR E +I +GRVRVNG+VV+++G +V+PR D + VDG R+ +R E W+ LHKPKG I + DE+ RK+V+DL+P A R+RLLPVGRLDRDSSGL+LLTN+N+W++ L+HPSFGH KTY+V + G P + + +GM + D T P + V+ DE++ + +M V++ EGRNRQIRRMFE +GHPV I RI GP+ + + G WR+L+ EI LK
Sbjct: 155 RRAAEDLIEEGRVRVNGRVVKQMGTRVNPRLDQIQVDGKRISMRPPSEIKWILLHKPKGYICTMADERDRKSVLDLVPFASRLRLLPVGRLDRDSSGLILLTNDNAWLHLLSHPSFGHLKTYKVKVKNGVPFGDVLEPLAKGMYLGSDKEKTSPVEIRVM-LDEKSHKEPLGSMTVSLLEGRNRQIRRMFESIGHPVHSIKRIRFGPLDLDKVGVGSWRQLNPTEIYSLK 383
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA) HSP 1 Score: 216 bits (550), Expect = 1.710e-62 Identity = 114/236 (48.31%), Postives = 159/236 (67.37%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVY-VDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQG-MLIDGDPNPTRPCYV-EVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLTTKT 699
RR E ++ DGRVRVNGK+V G K P DAV VDG V R + +W +HKPKG++ + D+ GRKTV DL+P A +RL+PVGRLDRD+SG++LLTN+N WV+ L+HP+FGH K YRVV + G + +R++ +G ++++GD P P V E + Y T+ T++++ +REGRNRQIRRM E +GHPV I R GP+ + SLK GEWR L + E+ +LK + K+
Sbjct: 198 RRDAEKLMADGRVRVNGKLVTTPGTKAKP--DAVITVDGMPVVQRDRNSIFWCVVHKPKGVLVTMEDDLGRKTVADLVPRARELRLVPVGRLDRDTSGVILLTNDNEWVHRLSHPAFGHLKRYRVVVKNGPVKADVYRTLQRGGVVLEGDERPLAPLAVAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTLRKSEVLQLKASSEKS 431
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A0M9UDB6_9CHLR (Pseudouridine synthase n=1 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0M9UDB6_9CHLR) HSP 1 Score: 198 bits (504), Expect = 6.370e-58 Identity = 117/249 (46.99%), Postives = 156/249 (62.65%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLT------TKTLALPESFRDR 729
RR+ E MI GRV VNG++V ELG KVDP +D + VDG RV L + Y +ALHKP+ IT+ D+ GRKTVVDL+P A L+PVGRLD +S GL+LLTN+ VN LTHP + HEK Y VV G+P+++ F ++ G++++ D T P V V + T T + V +REGR RQIRRMF +GHPV K+ R+ GP+ + +L +G WR+L E+K L+ L TKT P R R
Sbjct: 18 RREAEEMIRQGRVDVNGRMVTELGTKVDPEQDEIRVDGVRVRLDQVRKRY-IALHKPRHYITTMRDQFGRKTVVDLVPFAAEEHLVPVGRLDAESEGLILLTNDGDLVNVLTHPRYQHEKEY-VVEVYGHPNEDFFEAVKHGVVLE-DGTRTLPAKVRVERKTDDT--TILRVILREGRKRQIRRMFGILGHPVRKLKRVRIGPITLGNLPRGAWRELTPKEVKALQQLVREQTRKTKTARRPRQRRRR 261
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: A0A015KF66_9BACL (Pseudouridine synthase n=1 Tax=Paenibacillus darwinianus TaxID=1380763 RepID=A0A015KF66_9BACL) HSP 1 Score: 195 bits (496), Expect = 6.510e-57 Identity = 105/233 (45.06%), Postives = 147/233 (63.09%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNLTTKT 699
RR+CE +IL+GRV+VNG+ V LGVK DP D + V+G + E ++ LHKPKG+ITS D+KGRK V D +PG + R+ PVGRLD D+ GLLLLTN+ + N LTHP KTY +G P A + G+++D T P VE D D +++T+ +TI EGRNRQ+RRMFE +GHPVT + R+ G + ++ L +G++R L E+K+L++ KT
Sbjct: 16 RRKCEELILEGRVQVNGETVTTLGVKADPAADVITVNGKPI---RHESKLYLMLHKPKGVITSASDDKGRKVVKDYLPGIKE-RVYPVGRLDYDTEGLLLLTNDGEFANLLTHPRHHVAKTYMATV-KGVPHGSALEQLQIGIMLDD--GMTAPAEVEYQDVDPDNKKSTIRITIYEGRNRQVRRMFEAIGHPVTLLKRVKFGELTLQGLARGKYRHLKPQEVKELQDEARKT 241
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT) HSP 1 Score: 195 bits (495), Expect = 1.100e-56 Identity = 108/229 (47.16%), Postives = 148/229 (64.63%), Query Frame = 1
Query: 1 RRQCEAMILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKPKGIITSTGDEKGRKTVVDLIPGAERMRLLPVGRLDRDSSGLLLLTNENSWVNALTHPSFGHEKTYRVVAERGYPSDEAFRSITQGMLIDGDPNPTRPCYVEVLDYDERTRRTTMDVTIREGRNRQIRRMFEGVGHPVTKITRITHGPVRIKSLKQGEWRKLDEWEIKKLKNL 687
RR C +I GRV VN +VV E G +DP D V VDG R+ L + ++ L+KP G++++ D +GR TV+D++ G R+ PVGRLD +SSGLLLLTN+ LTHP F KTYRVVA +G+ +A RS+ +G++++ T P V +DYD+ T+ T +D+TIREGRNRQ+RRM E VGHPV ++TRI G +R+K L G WRKL E+ L+ L
Sbjct: 13 RRACAELIKQGRVAVNHQVVTEPGQLIDPTHDVVTVDGERIALENAQPFLYLMLNKPVGVVSTVQDPRGRPTVLDVV-GPLPARVYPVGRLDINSSGLLLLTNDGDLAYKLTHPRFEIPKTYRVVA-KGFVGPQAARSLAEGVVLED--GLTAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKLRPDELAALRTL 237 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19347.1 >prot_S-ischiensis_contig8.19347.1 ID=prot_S-ischiensis_contig8.19347.1|Name=mRNA_S-ischiensis_contig8.19347.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=377bp MILDGRVRVNGKVVRELGVKVDPRRDAVYVDGNRVYLRAQEETYWVALHKback to top mRNA from alignment at S-ischiensis_contig8:834660..843429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19347.1 ID=mRNA_S-ischiensis_contig8.19347.1|Name=mRNA_S-ischiensis_contig8.19347.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8770bp|location=Sequence derived from alignment at S-ischiensis_contig8:834660..843429+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:834660..843429+ >mRNA_S-ischiensis_contig8.19347.1 ID=mRNA_S-ischiensis_contig8.19347.1|Name=mRNA_S-ischiensis_contig8.19347.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2262bp|location=Sequence derived from alignment at S-ischiensis_contig8:834660..843429+ (Schizocladia ischiensis KU_0333)back to top |