mRNA_S-ischiensis_contig8.19346.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19346.1
Unique NamemRNA_S-ischiensis_contig8.19346.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:828465..829109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19346.1prot_S-ischiensis_contig8.19346.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 828514..828921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.75892-UTR-S-ischiensis_contig8:828464..8285131622817265.75892-UTR-S-ischiensis_contig8:828464..828513Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 828465..828513 +
1695740980.5482404-UTR-S-ischiensis_contig8:828464..8285131695740980.5482404-UTR-S-ischiensis_contig8:828464..828513Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 828465..828513 +
1622817265.782344-UTR-S-ischiensis_contig8:828921..8291091622817265.782344-UTR-S-ischiensis_contig8:828921..829109Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 828922..829109 +
1695740980.5699246-UTR-S-ischiensis_contig8:828921..8291091695740980.5699246-UTR-S-ischiensis_contig8:828921..829109Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 828922..829109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.7703862-CDS-S-ischiensis_contig8:828513..8289211622817265.7703862-CDS-S-ischiensis_contig8:828513..828921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 828514..828921 +
1695740980.559558-CDS-S-ischiensis_contig8:828513..8289211695740980.559558-CDS-S-ischiensis_contig8:828513..828921Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 828514..828921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19346.1

>prot_S-ischiensis_contig8.19346.1 ID=prot_S-ischiensis_contig8.19346.1|Name=mRNA_S-ischiensis_contig8.19346.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
MGACFEPSRTAPATRGSCPFGGTQNKQHRDKLLTTDRESLSRCRRRQWGS
GRAESGPGAASRYLELRECLSVHVRSTVVLLPPPLYAAGIGRDARCRAPR
KETRALLQLSLSQLYKACCVAVLYEYVRAAPTRRA*
back to top

mRNA from alignment at S-ischiensis_contig8:828465..829109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19346.1 ID=mRNA_S-ischiensis_contig8.19346.1|Name=mRNA_S-ischiensis_contig8.19346.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=645bp|location=Sequence derived from alignment at S-ischiensis_contig8:828465..829109+ (Schizocladia ischiensis KU_0333)
GGTGGAACCGCTGCCGCGTGCCGAGCCGTTCTTATTAAGTTACCTAGCCA
TGGGCGCCTGCTTCGAACCGAGTCGGACTGCCCCGGCCACTAGGGGGTCG
TGCCCATTCGGAGGGACACAGAACAAACAACACCGTGACAAGTTGCTGAC
AACAGACCGTGAGTCGTTGTCTCGTTGTCGTCGCCGCCAATGGGGCAGCG
GCCGGGCTGAGAGCGGCCCAGGGGCCGCGAGTCGCTATCTAGAACTCAGA
GAGTGTCTGTCTGTCCACGTGCGCTCAACTGTTGTGCTGCTCCCTCCTCC
CCTATACGCGGCCGGCATCGGCCGTGACGCCCGCTGCCGTGCGCCCCGCA
AAGAAACGCGGGCGCTGCTGCAGCTTTCGCTTTCGCAGTTGTACAAGGCC
TGCTGTGTTGCTGTACTGTACGAGTACGTACGTGCCGCGCCTACGAGGAG
GGCGTGATCGCAAACTTGACGGGAAAAATACCGCTGTGTACTGTACTGTA
CGAGTACGTACGTACGCCCCTCCGGGACACTCTGTGCCGTGCACGGACGA
GTTGGGCGTGATCGCAAACTTGATGGGAAAAAGTACCGCCGCACCTCCGG
GCGAGAGGAGCTTCTACTGAGGGTACAGACTCGGGCGGGCGGGCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:828465..829109+

>mRNA_S-ischiensis_contig8.19346.1 ID=mRNA_S-ischiensis_contig8.19346.1|Name=mRNA_S-ischiensis_contig8.19346.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig8:828465..829109+ (Schizocladia ischiensis KU_0333)
ATGGGCGCCTGCTTCGAACCGAGTCGGACTGCCCCGGCCACTAGGGGGTC
GTGCCCATTCGGAGGGACACAGAACAAACAACACCGTGACAAGTTGCTGA
CAACAGACCGTGAGTCGTTGTCTCGTTGTCGTCGCCGCCAATGGGGCAGC
GGCCGGGCTGAGAGCGGCCCAGGGGCCGCGAGTCGCTATCTAGAACTCAG
AGAGTGTCTGTCTGTCCACGTGCGCTCAACTGTTGTGCTGCTCCCTCCTC
CCCTATACGCGGCCGGCATCGGCCGTGACGCCCGCTGCCGTGCGCCCCGC
AAAGAAACGCGGGCGCTGCTGCAGCTTTCGCTTTCGCAGTTGTACAAGGC
CTGCTGTGTTGCTGTACTGTACGAGTACGTACGTGCCGCGCCTACGAGGA
GGGCGTGAATGGGCGCCTGCTTCGAACCGAGTCGGACTGCCCCGGCCACT
AGGGGGTCGTGCCCATTCGGAGGGACACAGAACAAACAACACCGTGACAA
GTTGCTGACAACAGACCGTGAGTCGTTGTCTCGTTGTCGTCGCCGCCAAT
GGGGCAGCGGCCGGGCTGAGAGCGGCCCAGGGGCCGCGAGTCGCTATCTA
GAACTCAGAGAGTGTCTGTCTGTCCACGTGCGCTCAACTGTTGTGCTGCT
CCCTCCTCCCCTATACGCGGCCGGCATCGGCCGTGACGCCCGCTGCCGTG
CGCCCCGCAAAGAAACGCGGGCGCTGCTGCAGCTTTCGCTTTCGCAGTTG
TACAAGGCCTGCTGTGTTGCTGTACTGTACGAGTACGTACGTGCCGCGCC
TACGAGGAGGGCGTGA
back to top