mRNA_S-ischiensis_contig8.19336.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE) HSP 1 Score: 340 bits (873), Expect = 9.230e-105 Identity = 168/357 (47.06%), Postives = 235/357 (65.83%), Query Frame = 1
Query: 139 LTDENLQELFERVSKMRRREVALDRLCARNWKMGTCSHDVLMNVAGEVQYMSYHGDLLAFGMDDGSSYIMDMATGNIVNAFIGHTREITAMSWDGYILLTGGADNTVRVHKHTLRGFDKEGVTDGLHCLKGHSGRITGAVLLEEGRLASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQILECQAHKGPVAALHFPAK-------------DVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFSEQRGV 1170
++++ + LF R+S +R+REV +DR+CA NW+ GTCSHD+L A +Q++ + GD LAFG D G ++I+ TG ++N F GH+ +TA+ +DG +L+TGG+D TVRV +++ +KE + + LH L+GH+ RITG L+ RLA+SS DG+L VWDV +GE L V + +P CLGAA GLMDGR LAW+A E+ +IL AH+G V L FP + DVL+TGG DG VK+WD GGA GN ++VGG H ++GH PV A+Q D+ ++VSAA DG V WD+ SG+ELF+I GH + SLQFDR +L+TDGT +A+ LHDF+ +RG
Sbjct: 145 ISEDEMSGLFRRISALRKREVEIDRVCAYNWRKGTCSHDLLFQAADPIQHLRWVGDHLAFGTDGGGTWIISRQTGFVINVFEGHSGAVTALYFDGELLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAA------GLMDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQVVMDDWFGRSRYVDVLLTGGGDGRVKYWDLNQGGAAEGNRFEVGGESYTHVFRGHAAPVTAVQCDEHRVVSAAKDGTVSVWDIRSGQELFQIYGHADGVSSLQFDREQLVTDGTGEALYLHDFTGRRGA 495
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.490e-81 Identity = 129/257 (50.19%), Postives = 177/257 (68.87%), Query Frame = 1
Query: 400 ITAMSWDGYILLTGGADNTVRVHKHTLRGFDKEGVTDGLHCLKGHSGRITGAVLLEEGRLASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQILECQAHKGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFSEQRGV 1170
+ A+ +DG +L+TGG+D TVRV +++ +KE + + LH L+GH+ RITG L+ RLA+SS DG+L VWDV +GE L V + +P CLGAA+GYM+ GL DGR LAW+A E+ +IL AH+G V L FP +DVL+TGG DG VK+WD GGA GN +++GG H ++GH PV A+Q D+ ++VSAA DG V WD+ SG+ELF+I GH + SLQFDR +L+TDGT + + LHDF+ +RG
Sbjct: 9 LPALYFDGDLLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAAEGYMVTGLTDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQDVLLTGGGDGRVKYWDLNQGGAAEGNRFEIGGESYTHVFRGHAAPVTAVQCDEHRVVSAATDGTVSVWDIRSGQELFQIYGHADGVGSLQFDREQLVTDGTGETLYLHDFTGRRGA 265
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA) HSP 1 Score: 237 bits (604), Expect = 6.490e-69 Identity = 124/270 (45.93%), Postives = 182/270 (67.41%), Query Frame = 1
Query: 409 MSWDGYILLTGGADNTVRVHKHTLR-GFDKEGVTDGLHCLKGHSGRITGAVLLEEGR-LASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQILECQAH-KGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFSEQRGVSGDLFQAGELLEE 1209
M++DG L+TGGAD TV+VH++T+ G + + + LH KGH+ R+ G V E R + S++ D L+ WD++TGE+++ + + PILCLGAA+GY+ G+M+G + +K ++L QA+ + V +++FP++ ++TGG +G V+FWD GG P G FY + GR +AH+Y+GH+ PVVALQ D+ KIVSAA DGVV +D+ GEELFRIEGH+ IRSLQFDR LITDGT + I++HDF+ + G + EL +E
Sbjct: 1 MAFDGEFLITGGADRTVKVHRNTISPGPGPQRLGECLHTWKGHTERVIGVVRPEGTRQVVSAAPDAKLIFWDLDTGEKIRELELPAPILCLGAAEGYLAVGMMNGNVSVFT----DKTGEEVLTWQAYQRAAVRSIYFPSQTRIMTGGGNGVVRFWDLKEGGTPDGGFYTIEGRGIAHEYKGHNAPVVALQGDEVKIVSAASDGVVRVFDMKMGEELFRIEGHSDDIRSLQFDRRFLITDGTMNTIVVHDFASEEGSDEFEIEGFELEDE 266
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A7S3XJD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJD3_HETAK) HSP 1 Score: 189 bits (481), Expect = 2.430e-50 Identity = 119/331 (35.95%), Postives = 175/331 (52.87%), Query Frame = 1
Query: 208 DRLCARNWKMGTCSHDVLMNVAGEVQYMSYHGDLLAFGMDDGSSYIMDMATGNIVNAFIGHTREITAMSWDGYILLTGGADNTVRVHKHTLRGFDKEGVTDGLHCLKGH-SGRITGAVLLEEGRLASSSVDGTLMVWDVETGERLQTVRVGTP--ILCLGAADGYMMAGLMDGRFLAWQASSR----EKEAVQILECQAHKGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVG-----GRKLAHQYQGHDGP-VVALQVDDCKIVSAALDGVVVAWDLGSGEELF--RIEGHTSAIRSLQFDRSKLITDGTADAIILHDFS 1155
D + NW+ G +L+ + M +LA + G ++M++ATG I + H ++AM WDG +L+T GADN +RV + G T + KGH I G V L+ R AS+ DG +++WD + + + P ILCL AA Y+ AGL DGR +A+ + S + + +LE QAH GPV +LHF ++ L TGG DG V+ W+ GG G + +KL Y+GH G V A+Q D+ KI+S +LDG + AW + +GEE F R+E + + ++QFD + LITDG +IL DFS
Sbjct: 11 DYIVENNWRTGQFQQHILIGADQRISAMKLSNSMLAVASELGDVHVMNLATGQIQSEIFPHRGAVSAMHWDGNVLITAGADNYIRVLPSPMTKAGSSGRTSLV--FKGHLHHHIMGLVRLDPNRFASAGTDGKILIWDHKKSPTSPVMEIQAPDAILCLDAAGDYITAGLADGRVVAYSSISGHDLVDGYSKALLEIQAHNGPVTSLHFNEQNFLATGGKDGVVRLWNILGGGDHGGQHLVLDLPGEPTKKLNRVYKGHPGSSVTAVQADNKKIISTSLDGHIKAWCIETGEEFFSLRVENNEKVL-NMQFDSTLLITDGHGKHLILKDFS 338
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A7S1SN14_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SN14_9CHLO) HSP 1 Score: 160 bits (405), Expect = 7.320e-39 Identity = 111/355 (31.27%), Postives = 164/355 (46.20%), Query Frame = 1
Query: 226 NWKMGTCSHDVLMNVAGEVQYMSYHGDLLAFGMDDGSSYIMD--------------------MATGNIVNAFIGHTREITAMSWDGYILLTGGADNTVRVHKHTLRGFDKEGVTDGLHC------------LKGHSGRITGAVLLEEGRLASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQI-LECQAHKGPVAALHFP-----AKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFSEQRGVSG 1176
NW+ G C+H + + V+ + HG+ +A G G YI+D ++T + +IG EIT++ +DG L+ G +RV + T KE G C L GH IT LL + R+ +SSVDG +++WD G + + VG + L A +++AGL DGR W K+ ++ L H P+ + +D+LVTG DG ++ WD +GGA H++ GH G VV+LQVD+ K++S G+ LF I G T I S+QFD S+L++DGT +AI LHDF VSG
Sbjct: 108 NWRKGRCTHHTVAVLDVWVRRLRLHGNCIAAGSHTGECYIIDGLCGRSTQHNLYPDTETEGPISTARCIRQYIGLEDEITSIDYDGSRLVAGTVSGALRVWE-TNENLVKESWEPGSGCQVLAGTPEDAVVLSGHCAPITHCQLLPQQRVITSSVDGNIIMWDGRNGRVMYRIPVGASVTSLHATPRHIIAGLGDGRVAVWSNPESPKKLPRLMLSFTGHPAPITCIQMLHDEQFEQDLLVTGAEDGLLRSWDVKNGGA------------WLHEFSGHRGKVVSLQVDESKVLSXXXXXXXXXXXXXXGKSLFGIWGLTPYIGSVQFDDSRLVSDGTNNAIGLHDFGVGAPVSG 449
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: R7QUA7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUA7_CHOCR) HSP 1 Score: 151 bits (381), Expect = 8.180e-36 Identity = 115/361 (31.86%), Postives = 175/361 (48.48%), Query Frame = 1
Query: 142 TDENLQELFERVSKMRRREVALDRLCARNWKMGTCSHDVLMNVAGE-VQYMSYHGDLLAFGMDDGSSYIMDMATGNIVNAFIGHTREITAMSW-DGYILLTGGAD------NTVRVHKHTLRG-FDKEG-VTDGLHCL-----KGHSGRITGAVL-LEEGRLASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAAD-GYMMAGLMDGRFLAWQASSREKEAVQILECQAHKGPVAALHF-PAKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFSEQRGV 1170
+D + Q L R++ +R +EV DR ARNW+ G V+ V + V+ +S+ D L G G D+ +G V HT ++TA+ + D Y++ G +D T R K +L D G DG+ L K H +I+ L ++ R+ S+S+DGT+ V ++TGE L +RVG P+L + + GY++ G GR LA+QA + +L H AL F VLVTG A G++K W F L H+ V+++Q+D K+VS++ DG V + L S + L+ I G T + + FD +LI DGT D +I H F +G
Sbjct: 90 SDASWQVLQRRLALLRDKEVIRDRTIARNWRSGQYDASVVAAVTRDYVRKLSFQDDFLVMGTASGGVVFSDLVSGRRVTCRHVHTGQVTAIHYRDSYMVSAGASDCEVAVWQTERYEKRSLWDELDARGEAVDGVLTLPKVRIKTHIDQISALRLDVKNSRVYSASIDGTVRVSHLDTGEELSMIRVGEPVLSMTLTEKGYLLLGSTSGRVLAYQA----ERGFHLLSMVCHNSNTTALAFWEETQVLVTGDAAGNLKVWSFNDS-------------TLLGTLPKHEAAVMSVQIDGSKVVSSSRDGSVAVFGLASRQRLYSIVGFTKYLGAATFDDVRLIADGTNDFVICHRFDSDQGA 433
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: F0Y3Q4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3Q4_AURAN) HSP 1 Score: 141 bits (356), Expect = 6.220e-32 Identity = 95/260 (36.54%), Postives = 130/260 (50.00%), Query Frame = 1
Query: 478 LRGFDKEGVTDGLHCLKGHSGRITGAVLLEEGRLASSSVDGTLMVWDVETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQILECQAHKGPVAALHFPAK--DV------------LVTGGADGSVKFWDF-----GSG-------GAPTGNFYQVGG--------RKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFS 1155
L G +G D + LKGH R+TG L + + S+S+D L++WDV G +PI CL ADG + GL+DG +A+ + V AH+G V +LHF A+ DV L TGG+DG V+ + G G GA G R H +GH G +VALQ DD K+VSA++DG V WDL SG++LF+++GH+ I SL F L+ DGT +I+HDFS
Sbjct: 268 LAGDKPDGEPDVV--LKGHGARVTGVKALGDDAILSASLDRRLLLWDVADGRHRVVAECRSPICCLAVADGVAVVGLLDGAVVAYDIDTGR---VNFELAGAHEGAVRSLHFEAEAEDVFSREGRSAAGRLLCTGGSDGVVRCYTMQPAADGGGFEPRKPDGAAAAAADAAGAVSAVYRERRCGKHALEGHGGAIVALQADDAKLVSASIDGTVRCWDLKSGDQLFKLDGHSRHINSLHFQGDLLVADGTQGTVIVHDFS 522
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A7S3YJS6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJS6_HETAK) HSP 1 Score: 127 bits (318), Expect = 7.010e-30 Identity = 73/180 (40.56%), Postives = 106/180 (58.89%), Query Frame = 1
Query: 646 VRVGTPILCLGAADGYMMAGLMDGRFLAWQAS-SREKEAVQILECQAHKGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPT---------GNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFS 1155
VR+ P LCLG A GY+ AGL+DGR +A+ A+ + A +L QAHKG V ALHF ++ LVTGG DG V W+ GG G++ +V L +++GH G + ALQ D KIVSA+ DG V WD+ +G+ LF + G S + + +D L+TDG ++ I+++F+
Sbjct: 4 VRLPAPALCLGQAGGYLTAGLLDGRVVAYSAARAPSPSAPPLLVIQAHKGAVTALHFTEENFLVTGGQDGRVLVWNLFDGGDHDRDTVAMELPGDYVRV----LNRRFEGHSGAITALQADCNKIVSASTDGAVKVWDITTGQILFEVYGDNS-VCCIHYDSKTLVTDGVKNSAIVYNFA 178
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A7S4DJW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJW4_HETAK) HSP 1 Score: 108 bits (270), Expect = 1.110e-23 Identity = 67/165 (40.61%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 646 VRVGTPILCLGAADGYMMAGLMDGRFLAWQAS-SREKEAVQILECQAHKGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPT---------GNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKL 1110
VR+ P LCLG A GY+ AGL+DGR +A+ A+ + A +L QAHKG V ALHF ++ LVTGG DG V W+ GG G++ +V L +++GH G + ALQ D KIVSA+ DG V WD+ +G L I+ + D SK+
Sbjct: 4 VRLPAPALCLGQAGGYLTAGLLDGRVVAYSAARAPSPSAPPLLVIQAHKGAVTALHFTEENFLVTGGQDGRVLVWNLFDGGDHDRDTVAMELPGDYVRV----LNRRFEGHSGAITALQADCNKIVSASTDGAVKVWDITTGGVLDTAGMLQGIIKKSEEDASKI 164
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Match: A0A7S1DRW7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DRW7_HEMAN) HSP 1 Score: 108 bits (270), Expect = 4.280e-23 Identity = 72/217 (33.18%), Postives = 109/217 (50.23%), Query Frame = 1
Query: 532 HSGRITGAVLLEEGRLASSSVDGTLMVWD---------VETGERLQTVRVGTPILCLGAADGYMMAGLMDGRFLAWQASSREKEAVQILECQAHKGPVAALHFPAKDVLVTGGADGSVKFWDFGSGGAPTGNFYQVGGRKLAHQYQGHDGPVVALQVDDCKIVSAALDGVVVAWDLGSGEELFRIEGHTSAIRSLQFDRSKLITDGTADAIILHDFS 1155
H+G +TG + +L SSSVDGT VWD +E GE + T + LG + Y+ G G L + +S + ++L +AH+GPV+ + + VLVTGG DG VK WD G Q G + L+ + H+ PV ++Q D KIVS + + GHT+ + ++QF+ +L+TDGT + ++LHDFS
Sbjct: 15 HNGAVTGLQIAGR-QLVSSSVDGTCRVWDLVKDRCEHIIEVGEAVTTCACSPEDVPLGTSR-YLATGTASGNVLVFSMNSWK----EVLSFKAHEGPVSCMWSDGQKVLVTGGEDGFVKVWDMVEG--------QGGPQNLS--IRAHNAPVASVQADGTKIVSXXXXXXXXXXSKEXXXGILEVAGHTAFLGTVQFEGHRLVTDGTNNVVVLHDFS 215 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19336.1 >prot_S-ischiensis_contig8.19336.1 ID=prot_S-ischiensis_contig8.19336.1|Name=mRNA_S-ischiensis_contig8.19336.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=362bp MRRREVALDRLCARNWKMGTCSHDVLMNVAGEVQYMSYHGDLLAFGMDDGback to top mRNA from alignment at S-ischiensis_contig8:779702..787541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19336.1 ID=mRNA_S-ischiensis_contig8.19336.1|Name=mRNA_S-ischiensis_contig8.19336.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7840bp|location=Sequence derived from alignment at S-ischiensis_contig8:779702..787541- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:779702..787541- >mRNA_S-ischiensis_contig8.19336.1 ID=mRNA_S-ischiensis_contig8.19336.1|Name=mRNA_S-ischiensis_contig8.19336.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2172bp|location=Sequence derived from alignment at S-ischiensis_contig8:779702..787541- (Schizocladia ischiensis KU_0333)back to top |