mRNA_S-ischiensis_contig8.19335.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19335.1
Unique NamemRNA_S-ischiensis_contig8.19335.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:775288..777329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2042
Cds size1392
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19335.1prot_S-ischiensis_contig8.19335.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 775658..777049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.5846784-UTR-S-ischiensis_contig8:775287..7756571622817265.5846784-UTR-S-ischiensis_contig8:775287..775657Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 775288..775657 +
1695740980.433729-UTR-S-ischiensis_contig8:775287..7756571695740980.433729-UTR-S-ischiensis_contig8:775287..775657Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 775288..775657 +
1622817265.6052566-UTR-S-ischiensis_contig8:777049..7773291622817265.6052566-UTR-S-ischiensis_contig8:777049..777329Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 777050..777329 +
1695740980.4612365-UTR-S-ischiensis_contig8:777049..7773291695740980.4612365-UTR-S-ischiensis_contig8:777049..777329Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 777050..777329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.5954103-CDS-S-ischiensis_contig8:775657..7770491622817265.5954103-CDS-S-ischiensis_contig8:775657..777049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 775658..777049 +
1695740980.4481766-CDS-S-ischiensis_contig8:775657..7770491695740980.4481766-CDS-S-ischiensis_contig8:775657..777049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 775658..777049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19335.1

>prot_S-ischiensis_contig8.19335.1 ID=prot_S-ischiensis_contig8.19335.1|Name=mRNA_S-ischiensis_contig8.19335.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=464bp
MQNDLASGSHASSTPGERAGGTQPEVLELPGLGPGSGLGSGPGAGHVSGP
DLEELRQRSARLRRDLAFLDTVHLENYLGSAGAVVTAAATVAAAPSVPAT
ALPARAASTAAVQTVPMAAVQVVTPAEAASELPGDRDSSDHTPAAADGDC
DAPTAAPHERNPGPAAAEQGPRPPLPPAPPWQAELPSGSDTPEPEGLGYV
ADTPPTGSSHSGEPGRDCDSQQPRGHSGQCHWLWEDVTVDWGAIQWAAAA
TAMASAPGVGGASAGAPAGGCGGGGGSAAAAKAKTQAQDPPGQDLVLAMA
APADRHIPRGNLPAGHSATGASGDLHGSSVDGGGGGVGEGTGELEGSSGG
VPELGQDPSVRDPEGPEPTPGFELVGGVWVATAEEGLVVPVVPVPSAAAA
ATTATTSAAAAGPEGSGVQPARDDGHDRVPLHPRMPGRGTDGGTSEPGSR
DTEAEHVQAKQAH*
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mRNA from alignment at S-ischiensis_contig8:775288..777329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19335.1 ID=mRNA_S-ischiensis_contig8.19335.1|Name=mRNA_S-ischiensis_contig8.19335.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2042bp|location=Sequence derived from alignment at S-ischiensis_contig8:775288..777329+ (Schizocladia ischiensis KU_0333)
GGGATCGACAGGTTTTGTCCCAACGCACGAACTACCCTTGCAAGAGTGGT
TCGACGGGGCTGGGCCAGGATTGAGACGGGGCAGTCTAGTCTTGGGCCCC
CTTCCTGGGTGGAGTCAGGGACTCCCTGCGAACCCCGGCAACGTGAGGTT
GAGGAACCGAACACCTCTCTCGTCGCACGGCCACGGCGGGGCCTCACTGG
CCGGAATCCGCCCTGCGGTGGCGGGGGGAGGGGCTGGACACGTCCCAGAC
AACGCAAATGCAGGAGAAGCAACAGCACAGAGCAGTTGCCCACCCACCCC
CCATGGTGGCGGCAGCGGTGGCGGCTGGGGCGGTGGCGGTGGGGGCAGCG
TCGTGTACAAACCACCTGGCATGCAGAATGACTTGGCGTCTGGCAGCCAT
GCTTCCAGCACGCCCGGGGAACGAGCTGGGGGTACGCAGCCAGAGGTCCT
GGAGTTGCCAGGCCTGGGCCCGGGGTCAGGACTGGGGTCGGGGCCAGGGG
CAGGGCACGTATCAGGGCCGGACCTGGAGGAGCTGCGGCAGCGGAGTGCG
CGCCTGCGGAGGGACCTTGCTTTCCTAGACACAGTGCACCTGGAAAATTA
CCTTGGCAGTGCGGGGGCGGTGGTAACGGCCGCCGCCACCGTGGCGGCTG
CTCCGAGTGTGCCAGCGACTGCCTTGCCGGCCCGGGCTGCTTCCACCGCA
GCAGTGCAAACTGTGCCCATGGCAGCGGTACAAGTAGTCACCCCAGCGGA
GGCCGCATCTGAACTGCCCGGCGACCGTGACTCGTCGGATCATACCCCAG
CAGCAGCCGACGGTGACTGTGATGCTCCAACTGCTGCACCCCATGAACGA
AATCCAGGACCCGCCGCGGCCGAACAAGGGCCCAGGCCGCCATTGCCCCC
CGCACCCCCCTGGCAGGCTGAGCTGCCCAGTGGCAGTGACACACCAGAGC
CCGAAGGTCTAGGCTATGTTGCTGACACCCCCCCCACTGGCAGCAGCCAC
AGCGGCGAGCCTGGGCGTGACTGTGACTCGCAGCAGCCCCGGGGGCACAG
TGGGCAGTGCCACTGGCTGTGGGAAGACGTGACCGTCGACTGGGGGGCCA
TTCAGTGGGCTGCTGCTGCCACCGCAATGGCATCGGCTCCTGGGGTTGGT
GGTGCTTCTGCTGGCGCTCCTGCCGGCGGCTGCGGTGGTGGTGGTGGCAG
TGCTGCTGCTGCAAAGGCCAAGACCCAGGCCCAGGATCCTCCTGGACAGG
ACCTGGTGCTTGCAATGGCAGCTCCTGCCGACAGGCACATCCCCAGAGGG
AACCTGCCTGCGGGTCATAGTGCCACTGGTGCCAGTGGCGATTTACATGG
CAGCAGTGTTGACGGCGGTGGTGGCGGTGTAGGTGAAGGCACAGGCGAGC
TCGAAGGCAGCAGTGGCGGTGTGCCTGAGCTGGGGCAAGACCCCAGTGTG
CGAGACCCTGAAGGGCCTGAACCCACCCCGGGCTTCGAGTTAGTTGGGGG
TGTGTGGGTTGCCACAGCAGAGGAAGGGCTTGTCGTGCCAGTGGTGCCTG
TGCCCTCTGCAGCGGCCGCTGCGACCACTGCCACCACCTCTGCCGCCGCT
GCCGGGCCTGAGGGTTCCGGAGTGCAGCCTGCGAGGGATGACGGCCATGA
CAGAGTGCCTTTGCATCCACGCATGCCAGGAAGGGGCACCGATGGTGGGA
CCTCCGAGCCCGGGTCGAGAGACACAGAGGCCGAGCACGTCCAAGCCAAG
CAGGCTCACTGACTCAGGCTGGCACAGCCGCAGCCCGACCTGAGGTGCGT
CAAGACTTTGAGCCTGAGTCGGTGAGCACCGACATGAGTGCCAACAGGGC
TCATGACCTGTCACACCATGAGGCACTAATAGGATAGCACACCAATGACC
AACAGGGTTCATAACCTGTCGCACCATGAGGCACTTGTAGCACATCAATG
ACTATACCATAGAGCTAAAGGACGAAGGATAAGGAACCCCCCAAGGATAA
GGACCCCCCTTCGATAGCTTTTGGGCCCAAAAAACAATCACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:775288..777329+

>mRNA_S-ischiensis_contig8.19335.1 ID=mRNA_S-ischiensis_contig8.19335.1|Name=mRNA_S-ischiensis_contig8.19335.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2784bp|location=Sequence derived from alignment at S-ischiensis_contig8:775288..777329+ (Schizocladia ischiensis KU_0333)
ATGCAGAATGACTTGGCGTCTGGCAGCCATGCTTCCAGCACGCCCGGGGA
ACGAGCTGGGGGTACGCAGCCAGAGGTCCTGGAGTTGCCAGGCCTGGGCC
CGGGGTCAGGACTGGGGTCGGGGCCAGGGGCAGGGCACGTATCAGGGCCG
GACCTGGAGGAGCTGCGGCAGCGGAGTGCGCGCCTGCGGAGGGACCTTGC
TTTCCTAGACACAGTGCACCTGGAAAATTACCTTGGCAGTGCGGGGGCGG
TGGTAACGGCCGCCGCCACCGTGGCGGCTGCTCCGAGTGTGCCAGCGACT
GCCTTGCCGGCCCGGGCTGCTTCCACCGCAGCAGTGCAAACTGTGCCCAT
GGCAGCGGTACAAGTAGTCACCCCAGCGGAGGCCGCATCTGAACTGCCCG
GCGACCGTGACTCGTCGGATCATACCCCAGCAGCAGCCGACGGTGACTGT
GATGCTCCAACTGCTGCACCCCATGAACGAAATCCAGGACCCGCCGCGGC
CGAACAAGGGCCCAGGCCGCCATTGCCCCCCGCACCCCCCTGGCAGGCTG
AGCTGCCCAGTGGCAGTGACACACCAGAGCCCGAAGGTCTAGGCTATGTT
GCTGACACCCCCCCCACTGGCAGCAGCCACAGCGGCGAGCCTGGGCGTGA
CTGTGACTCGCAGCAGCCCCGGGGGCACAGTGGGCAGTGCCACTGGCTGT
GGGAAGACGTGACCGTCGACTGGGGGGCCATTCAGTGGGCTGCTGCTGCC
ACCGCAATGGCATCGGCTCCTGGGGTTGGTGGTGCTTCTGCTGGCGCTCC
TGCCGGCGGCTGCGGTGGTGGTGGTGGCAGTGCTGCTGCTGCAAAGGCCA
AGACCCAGGCCCAGGATCCTCCTGGACAGGACCTGGTGCTTGCAATGGCA
GCTCCTGCCGACAGGCACATCCCCAGAGGGAACCTGCCTGCGGGTCATAG
TGCCACTGGTGCCAGTGGCGATTTACATGGCAGCAGTGTTGACGGCGGTG
GTGGCGGTGTAGGTGAAGGCACAGGCGAGCTCGAAGGCAGCAGTGGCGGT
GTGCCTGAGCTGGGGCAAGACCCCAGTGTGCGAGACCCTGAAGGGCCTGA
ACCCACCCCGGGCTTCGAGTTAGTTGGGGGTGTGTGGGTTGCCACAGCAG
AGGAAGGGCTTGTCGTGCCAGTGGTGCCTGTGCCCTCTGCAGCGGCCGCT
GCGACCACTGCCACCACCTCTGCCGCCGCTGCCGGGCCTGAGGGTTCCGG
AGTGCAGCCTGCGAGGGATGACGGCCATGACAGAGTGCCTTTGCATCCAC
GCATGCCAGGAAGGGGCACCGATGGTGGGACCTCCGAGCCCGGGTCGAGA
GACACAGAGGCCGAGCACGTCCAAGCCAAGCAGGCTCACTGAATGCAGAA
TGACTTGGCGTCTGGCAGCCATGCTTCCAGCACGCCCGGGGAACGAGCTG
GGGGTACGCAGCCAGAGGTCCTGGAGTTGCCAGGCCTGGGCCCGGGGTCA
GGACTGGGGTCGGGGCCAGGGGCAGGGCACGTATCAGGGCCGGACCTGGA
GGAGCTGCGGCAGCGGAGTGCGCGCCTGCGGAGGGACCTTGCTTTCCTAG
ACACAGTGCACCTGGAAAATTACCTTGGCAGTGCGGGGGCGGTGGTAACG
GCCGCCGCCACCGTGGCGGCTGCTCCGAGTGTGCCAGCGACTGCCTTGCC
GGCCCGGGCTGCTTCCACCGCAGCAGTGCAAACTGTGCCCATGGCAGCGG
TACAAGTAGTCACCCCAGCGGAGGCCGCATCTGAACTGCCCGGCGACCGT
GACTCGTCGGATCATACCCCAGCAGCAGCCGACGGTGACTGTGATGCTCC
AACTGCTGCACCCCATGAACGAAATCCAGGACCCGCCGCGGCCGAACAAG
GGCCCAGGCCGCCATTGCCCCCCGCACCCCCCTGGCAGGCTGAGCTGCCC
AGTGGCAGTGACACACCAGAGCCCGAAGGTCTAGGCTATGTTGCTGACAC
CCCCCCCACTGGCAGCAGCCACAGCGGCGAGCCTGGGCGTGACTGTGACT
CGCAGCAGCCCCGGGGGCACAGTGGGCAGTGCCACTGGCTGTGGGAAGAC
GTGACCGTCGACTGGGGGGCCATTCAGTGGGCTGCTGCTGCCACCGCAAT
GGCATCGGCTCCTGGGGTTGGTGGTGCTTCTGCTGGCGCTCCTGCCGGCG
GCTGCGGTGGTGGTGGTGGCAGTGCTGCTGCTGCAAAGGCCAAGACCCAG
GCCCAGGATCCTCCTGGACAGGACCTGGTGCTTGCAATGGCAGCTCCTGC
CGACAGGCACATCCCCAGAGGGAACCTGCCTGCGGGTCATAGTGCCACTG
GTGCCAGTGGCGATTTACATGGCAGCAGTGTTGACGGCGGTGGTGGCGGT
GTAGGTGAAGGCACAGGCGAGCTCGAAGGCAGCAGTGGCGGTGTGCCTGA
GCTGGGGCAAGACCCCAGTGTGCGAGACCCTGAAGGGCCTGAACCCACCC
CGGGCTTCGAGTTAGTTGGGGGTGTGTGGGTTGCCACAGCAGAGGAAGGG
CTTGTCGTGCCAGTGGTGCCTGTGCCCTCTGCAGCGGCCGCTGCGACCAC
TGCCACCACCTCTGCCGCCGCTGCCGGGCCTGAGGGTTCCGGAGTGCAGC
CTGCGAGGGATGACGGCCATGACAGAGTGCCTTTGCATCCACGCATGCCA
GGAAGGGGCACCGATGGTGGGACCTCCGAGCCCGGGTCGAGAGACACAGA
GGCCGAGCACGTCCAAGCCAAGCAGGCTCACTGA
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