mRNA_S-ischiensis_contig8.19326.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19326.1
Unique NamemRNA_S-ischiensis_contig8.19326.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A6H5KZR8_9PHAE (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZR8_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 1.010e-96
Identity = 156/264 (59.09%), Postives = 196/264 (74.24%), Query Frame = 2
Query:  233 RQDDLVIAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIATGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFEGQLGSITLPETGGQPAMMSLLYRPGHYDILY 1024
            +Q++  + Q N I+  +   Q  +G KE +  LLPEYEGNPKPGF KGVQDL KRY ++RRVRGDGNCFYRSFLF  LE LL G+  G     T  KA  +L R++  +  SKA L++LGY EVA+D FW+ F++ L+ LP   + QL+  FREE G CE++VWYCR+LTSG+LKL+ +RF PF+     M  FC REVEP GKECEQ+QI+ LCEHL+TPV+IEYLDGQDF GQLGSITLP+TG + AM++LLYRPGHYD+LY
Sbjct:   34 KQNEQTVEQQNAINATIKATQPKVGAKEEVDALLPEYEGNPKPGFRKGVQDLGKRYSALRRVRGDGNCFYRSFLFGYLERLLQGIK-GVGDANT--KAMLELSRLRQVVHDSKAALIALGYEEVALDDFWQTFLQELDALPNMEMGQLEINFREEAGPCEYIVWYCRMLTSGFLKLNADRFLPFLEHTVDMQDFCQREVEPMGKECEQIQIMGLCEHLNTPVKIEYLDGQDFSGQLGSITLPDTGAE-AMVTLLYRPGHYDVLY 293          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A835ZBB3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB3_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.820e-73
Identity = 142/287 (49.48%), Postives = 182/287 (63.41%), Query Frame = 2
Query:  191 ENSSDEAKSDDAWKRQD-DLVIAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARA----DLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIATGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFEGQLGSITLPET--GGQPAMMSLLYRPGHYDILYAT 1030
            E   +EA S+ A K Q+ +  +AQ N I + +  AQ L+G     S L PEY  N KPGF KG++ L KRY  +R VRGDGNCFYR+  FALLE L+  L +G+   A   KA A    D G+       S   LLSLGY EV+ DMF  E +EALE +   T + L+ +F E+GG+ E+++W+CRLLTS ++K H  RFE F+  G+++D FCAREVEP G ECEQ+QIIALCE LD  VRIEYL+G+DF+   G   +P    G Q A   LL+RPGHYDILY  
Sbjct:    5 ERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKE---SCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLI-GDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 287          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: W7TH65_9STRA (Ubiquitinyl hydrolase 1 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH65_9STRA)

HSP 1 Score: 246 bits (629), Expect = 8.590e-71
Identity = 141/275 (51.27%), Postives = 175/275 (63.64%), Query Frame = 2
Query:  245 LVIAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLG-GLS---AGEQQPATVEKARA-----DLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFI-ATGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFE--GQLGSITLPET--GGQP--AMMSLLYRPGHYDIL 1021
            L IAQ  EI   +  +Q L+G  EP S LL  Y+ NP+ GF +GV+DL +RY  MRR+R DGNCFYR+FLFA L GL+  G+     GE++     K R      +  R    +  SKA LL++GY EVAID+FWE FVE LE LP K+L  L+  F E  G   ++VWYCRLLTSGYLK H+E +E F+ A+   MD FC REVEP GKECEQVQI+AL   L   VRIEYLDG+     GQL    LP+   GG+     ++LLYRPGHYD+L
Sbjct:   40 LTIAQQEEIDSQIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRDGNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERFSQTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPHGVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKECEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEGVPVTLLYRPGHYDLL 314          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A7S2SU36_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU36_9STRA)

HSP 1 Score: 224 bits (572), Expect = 4.440e-63
Identity = 123/267 (46.07%), Postives = 165/267 (61.80%), Query Frame = 2
Query:  251 IAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFI-----ATGESM---DAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFE-GQLGSITLPETGGQPAMMSLLYRPGHYDILY 1024
            ++Q  EI + +      +G  EP+  L  EY GNP+PGF  G++ L  RY ++RRVRGDGNCFYR FLF  LE L+       Q+   VE A  +  R       SK  L+S+GY E+AI+ FWE  VEALE LP   L  L+++F+EE G+ E++VWYCR + +GY+K + + F PFI     A G ++   + +C REVEP G+ECE VQI+ALCE +   V IEYLDG   + G+L   T P+  G    ++LLYRPGHYDILY
Sbjct:    1 MSQLGEIERDIAAKSLKVGVPEPVQGLAGEYAGNPRPGFLPGIEYLASRYSALRRVRGDGNCFYRCFLFGYLEQLI------RQRDTAVEDAERERKRALQAARQSKDDLVSVGYDEMAIETFWEVLVEALETLPSTDLATLEKQFQEENGDAEYMVWYCRAIAAGYMKRNPDTFLPFILALDDAAGTAVVDINEYCRREVEPMGRECEAVQIMALCEAMQIGVAIEYLDGALLDQGRLSCPTFPD--GAAPQLTLLYRPGHYDILY 259          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A2D4CBL9_PYTIN (Ubiquitinyl hydrolase 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBL9_PYTIN)

HSP 1 Score: 221 bits (563), Expect = 2.920e-62
Identity = 123/250 (49.20%), Postives = 158/250 (63.20%), Query Frame = 2
Query:  299 LLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIA---TGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFEGQLGSITLPETGGQPAMMS-----LLYRPGHYDILY 1024
            L+G + P+ +L  E+EGN  P F  G+  L + Y +MRRVR DGNCF+R F+FAL E L+       +  A  EKA A L R++  I  SKA L+++GY EVAID FWE FV  L+ +  +T  +L  +F  EGG  E+LVWY RLLT+GYLK + E+F+PFI     G S++ FCA EVEP GKEC+Q Q+IAL E L   V+IEYLDG   EGQ   +     G  P+  S     LLYRPGHYD+LY
Sbjct:    9 LVGERAPVLELRKEFEGNAXPNFLHGITALDRHYEAMRRVRRDGNCFFRGFIFALCEQLV------SRDDADAEKAAALLARIQNTIRKSKAELVAIGYXEVAIDTFWETFVXYLDAMETRTHSELVXDFGTEGGESEYLVWYMRLLTAGYLKRNSEQFQPFIEGLHPGLSVEQFCAAEVEPMGKECDQPQVIALTEALQVGVKIEYLDGNAAEGQ--ELQHYVCGSSPSGESSIHVHLLYRPGHYDVLY 250          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A7S1ADL7_NOCSC (Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ADL7_NOCSC)

HSP 1 Score: 216 bits (550), Expect = 3.580e-60
Identity = 132/274 (48.18%), Postives = 165/274 (60.22%), Query Frame = 2
Query:  230 KRQDDLVIAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLG-------GLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIATGESMD--AFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFEGQLGSITLPETGGQPAMMSLLYRPGHYDILY 1024
            + Q+ L   Q   I+  +   Q L+G KE  + L   Y+ NP   F  G+ DL  RY SMRRVRGDGNCFYRSFLF  LE LL         L+A E  P   +    +L RV A + GSK  L+++GY E AID+FW E VE +E LP  T + + E+F EE G  E++VWYCR L++G+LK   ERF PFI      D  +FCA EVEP  KECEQVQIIAL E+L   VRIEYLDG+   G   +   P+  G    ++LLYRPGHYD+LY
Sbjct:    9 QEQNVLTEKQVESITAQI-RTQALIGIKESPNVLDAVYQDNPLE-FRAGIADLTARY-SMRRVRGDGNCFYRSFLFGYLEQLLSQQRQHEAALAAQESAPEGEDAWCPELQRVVARLRGSKLDLVAVGYQESAIDVFWGEIVEFVEALPTHTPESILEQFNEENGGAEYMVWYCRALSAGFLKADPERFMPFILGANYGDIASFCAAEVEPMYKECEQVQIIALSEYLGVGVRIEYLDGRS-NGGASTHVFPD--GVHPQLTLLYRPGHYDLLY 276          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A8K1CBZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBZ9_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 4.850e-60
Identity = 122/247 (49.39%), Postives = 155/247 (62.75%), Query Frame = 2
Query:  314 EPLSKLL--PEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIA---TGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDG-----QDFEGQLGSITLPETGGQPAMMSLLYRPGHYDILY 1024
            +P S LL   EY GN  P F  G++ L K Y  MRRVRGDGNCF+R+F+FAL E LL      ++  A     R    R+   I  SKA L+++GYSEVAID FWE FV+ LE +  +T  +L ++F+ EGG CE+LVWY RLLT+G+LK H E+F+PFI     G +++ FCA EVEP GKEC+Q QI AL E L   V+IEYLDG     QD +  +   T  E       + +LYRPGHYDILY
Sbjct:   24 DPTSVLLLKAEYLGNANPNFLHGIEALNKHYEGMRRVRGDGNCFFRAFIFALCEQLL----TNKEDVAAATALRL---RILDKIRQSKAELIAIGYSEVAIDAFWETFVDYLEAMETRTHDELVQDFQTEGGECEYLVWYARLLTAGHLKRHAEQFQPFIEGLFPGLTVEQFCAAEVEPMGKECDQPQITALTEALQVRVKIEYLDGSTTAEQDLQSYICG-TNAEGSEDSINIHVLYRPGHYDILY 262          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: A0A6A3F9B4_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F9B4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.550e-59
Identity = 120/243 (49.38%), Postives = 155/243 (63.79%), Query Frame = 2
Query:  329 LLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADL-GRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFI---ATGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDG-----QDFEGQLGSITLPETGGQ-PAMMSLLYRPGHYDILYA 1027
            L  EY GN    F  G++ L  RY ++RRVRGDGNCF+R F+FAL E LL          A  E   A L GR++  I  SK+ LL++GYS+VAID FWE FV+ L  +  ++  +L ++F+ EGG  E+LVWY RLLT+GY+K H E F+PFI     G+++  FCA EVEP GKEC+Q QI AL E L   V+IEYLDG     Q+ +  + S T+ E   Q P  ++LLYRPGHYDILYA
Sbjct:   24 LKAEYVGNANANFMHGIESLNARYEALRRVRGDGNCFFRGFIFALCERLL--------PTAGAEDGNAALRGRMQHKIQQSKSELLAVGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGGSEYLVWYMRLLTAGYMKQHAETFQPFIDGLCPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGQELQSYVCSPTVAEQQEQEPVSITLLYRPGHYDILYA 258          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: W2QGG4_PHYPN (Ubiquitinyl hydrolase 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2QGG4_PHYPN)

HSP 1 Score: 213 bits (541), Expect = 5.520e-59
Identity = 119/252 (47.22%), Postives = 159/252 (63.10%), Query Frame = 2
Query:  299 LLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLG-GLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIA---TGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDG-----QDFEGQLGSITLPETGGQ-PAMMSLLYRPGHYDILY 1024
            LL  +  +  L  EY GN  P F  G+  L  RY ++RRVRGDGNCF+R F+FAL E LL  G + GE   A +        R++  I  SK+ L+++GYS+VAID FWE FV+ L  +  ++  +L ++F+ EGG  E+LVWY RLLT+GY+K + E F+PFI     G+++  FCA EVEP GKEC+Q QI AL E L   V+IEYLDG     +D +  + S T+  T  Q P  ++LLYRPGHYDILY
Sbjct:   18 LLSDRMSVLCLKAEYVGNANPNFMHGIDSLNARYEALRRVRGDGNCFFRGFIFALCEQLLPTGGAGGEDSNAALRS------RIQDKIQMSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGESEYLVWYMRLLTAGYMKKNAETFQPFIDGLYPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGEDLQSYVCSPTVEATTQQEPVSITLLYRPGHYDILY 263          
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Match: M4C1S8_HYAAE (Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1S8_HYAAE)

HSP 1 Score: 212 bits (540), Expect = 7.160e-59
Identity = 122/266 (45.86%), Postives = 164/266 (61.65%), Query Frame = 2
Query:  251 IAQTNEISQAVCNAQDLLGHKEPLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALLEGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDMFWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHRERFEPFIA---TGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLDGQDFEGQ-LGSI---TLPETGGQ-PAMMSLLYRPGHYDILY 1024
            +A  N+   +   A  LL  +  +  L PEY GN    F  G++ L  RY ++RRVRGDGNCF+RSF+F L E LL    A +   A          R++  I  SK+ L+++GYS+VAID FWE FV+ L  +  ++  +L ++F+ EGG  E+LVWY RLLT+GY+K + ERF+PFI     G+++  FCA EVEP GKEC+Q QI AL E L+  V+IEYLDG    G+ L S    T+  T  Q P  ++LLYRPGHYDILY
Sbjct:    1 MATNNDEPSSAYAASPLLSDRMSVLCLKPEYVGNVNGNFMHGIESLDTRYGALRRVRGDGNCFFRSFIFTLCEHLLPSQGAEDSNAAL-------RCRIQDKIQKSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSYAELVQDFQTEGGEAEYLVWYMRLLTAGYMKKNAERFQPFIDGPYPGQTVAQFCATEVEPMGKECDQPQIAALTEALEVGVKIEYLDGSAGAGEPLQSYVCSTVDATERQAPVFITLLYRPGHYDILY 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZR8_9PHAE1.010e-9659.09Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBB3_9STRA1.820e-7349.48Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
W7TH65_9STRA8.590e-7151.27Ubiquitinyl hydrolase 1 n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2SU36_9STRA4.440e-6346.07Ubiquitinyl hydrolase 1 n=1 Tax=Rhizochromulina ma... [more]
A0A2D4CBL9_PYTIN2.920e-6249.20Ubiquitinyl hydrolase 1 n=1 Tax=Pythium insidiosum... [more]
A0A7S1ADL7_NOCSC3.580e-6048.18Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintill... [more]
A0A8K1CBZ9_PYTOL4.850e-6049.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3F9B4_9STRA1.550e-5949.38Ubiquitinyl hydrolase 1 n=3 Tax=Phytophthora TaxID... [more]
W2QGG4_PHYPN5.520e-5947.22Ubiquitinyl hydrolase 1 n=8 Tax=Phytophthora TaxID... [more]
M4C1S8_HYAAE7.160e-5945.86Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:693671..701830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.7
Seed ortholog evalue1.6e-84
Seed eggNOG ortholog2880.D8LU52
Preferred nameOTUB1
KEGG koko:K09602,ko:K09603
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006282,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009892,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019899,GO:0031056,GO:0031057,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033182,GO:0033183,GO:0033554,GO:0034097,GO:0035871,GO:0036211,GO:0036459,GO:0042221,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045738,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070555,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0101005,GO:0140096,GO:1900044,GO:1900045,GO:1901314,GO:1901315,GO:1901564,GO:1902275,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1905268,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001251
EggNOG free text desc.NEDD8-specific protease activity
EggNOG OGsKOG3991@1,KOG3991@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C65, otubain
Ec32 orthologEc-16_000260.1
Exons8
Model size2782
Cds size1017
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19326.1prot_S-ischiensis_contig8.19326.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 693687..700081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817274.7011538-UTR-S-ischiensis_contig8:693670..6936861622817274.7011538-UTR-S-ischiensis_contig8:693670..693686Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 693671..693686 +
1695740987.054319-UTR-S-ischiensis_contig8:693670..6936861695740987.054319-UTR-S-ischiensis_contig8:693670..693686Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 693671..693686 +
1622817274.8076165-UTR-S-ischiensis_contig8:700081..7018301622817274.8076165-UTR-S-ischiensis_contig8:700081..701830Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 700082..701830 +
1695740987.1844518-UTR-S-ischiensis_contig8:700081..7018301695740987.1844518-UTR-S-ischiensis_contig8:700081..701830Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 700082..701830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817274.7152164-CDS-S-ischiensis_contig8:693686..6937821622817274.7152164-CDS-S-ischiensis_contig8:693686..693782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 693687..693782 +
1695740987.0694683-CDS-S-ischiensis_contig8:693686..6937821695740987.0694683-CDS-S-ischiensis_contig8:693686..693782Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 693687..693782 +
1622817274.7262418-CDS-S-ischiensis_contig8:694287..6944701622817274.7262418-CDS-S-ischiensis_contig8:694287..694470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 694288..694470 +
1695740987.080032-CDS-S-ischiensis_contig8:694287..6944701695740987.080032-CDS-S-ischiensis_contig8:694287..694470Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 694288..694470 +
1622817274.7376769-CDS-S-ischiensis_contig8:694689..6947881622817274.7376769-CDS-S-ischiensis_contig8:694689..694788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 694690..694788 +
1695740987.097065-CDS-S-ischiensis_contig8:694689..6947881695740987.097065-CDS-S-ischiensis_contig8:694689..694788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 694690..694788 +
1622817274.7490594-CDS-S-ischiensis_contig8:696104..6962771622817274.7490594-CDS-S-ischiensis_contig8:696104..696277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 696105..696277 +
1695740987.1093175-CDS-S-ischiensis_contig8:696104..6962771695740987.1093175-CDS-S-ischiensis_contig8:696104..696277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 696105..696277 +
1622817274.761778-CDS-S-ischiensis_contig8:696747..6968591622817274.761778-CDS-S-ischiensis_contig8:696747..696859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 696748..696859 +
1695740987.1227186-CDS-S-ischiensis_contig8:696747..6968591695740987.1227186-CDS-S-ischiensis_contig8:696747..696859Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 696748..696859 +
1622817274.7721229-CDS-S-ischiensis_contig8:697230..6974071622817274.7721229-CDS-S-ischiensis_contig8:697230..697407Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 697231..697407 +
1695740987.1360288-CDS-S-ischiensis_contig8:697230..6974071695740987.1360288-CDS-S-ischiensis_contig8:697230..697407Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 697231..697407 +
1622817274.7822258-CDS-S-ischiensis_contig8:699069..6992121622817274.7822258-CDS-S-ischiensis_contig8:699069..699212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 699070..699212 +
1695740987.1523547-CDS-S-ischiensis_contig8:699069..6992121695740987.1523547-CDS-S-ischiensis_contig8:699069..699212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 699070..699212 +
1622817274.7927554-CDS-S-ischiensis_contig8:700047..7000811622817274.7927554-CDS-S-ischiensis_contig8:700047..700081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 700048..700081 +
1695740987.169882-CDS-S-ischiensis_contig8:700047..7000811695740987.169882-CDS-S-ischiensis_contig8:700047..700081Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 700048..700081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19326.1

>prot_S-ischiensis_contig8.19326.1 ID=prot_S-ischiensis_contig8.19326.1|Name=mRNA_S-ischiensis_contig8.19326.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=339bp
MHASGGLKISVCDEEVRGFRHQKTVCSEGIAPPADLDCRTMASPADEVKD
SGPHLVKEENSSDEAKSDDAWKRQDDLVIAQTNEISQAVCNAQDLLGHKE
PLSKLLPEYEGNPKPGFAKGVQDLMKRYPSMRRVRGDGNCFYRSFLFALL
EGLLGGLSAGEQQPATVEKARADLGRVKANIVGSKALLLSLGYSEVAIDM
FWEEFVEALEKLPEKTLQQLQEEFREEGGNCEFLVWYCRLLTSGYLKLHR
ERFEPFIATGESMDAFCAREVEPNGKECEQVQIIALCEHLDTPVRIEYLD
GQDFEGQLGSITLPETGGQPAMMSLLYRPGHYDILYAT*
back to top

mRNA from alignment at S-ischiensis_contig8:693671..701830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19326.1 ID=mRNA_S-ischiensis_contig8.19326.1|Name=mRNA_S-ischiensis_contig8.19326.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8160bp|location=Sequence derived from alignment at S-ischiensis_contig8:693671..701830+ (Schizocladia ischiensis KU_0333)
CTCGTGTGGATCGGAAATGCACGCCTCCGGCGGCCTGAAGATCAGCGTTT GTGATGAAGAAGTGAGAGGTTTTCGGCACCAGAAGACGGTCTGCAGTGAA GGGATTGCGCCGGTGAGCTGTTTGCGGCTGTAGACAGGAGGAGAGCGCAT AGCGTGCAGCCCGCGTCCTTGTGCAGTGGAGCACATTTGCTCTTCTGCAA CCCATTTCGGTTGACACTGCGTTACAGCGACACTTCCAGTGCTTGGGCGT AGAGACTGGCTGAGGCATGGATCAAGATTAACCAGCTCCCGCAACCGACC ATTGCGACCGTGTGCAGGCAGCTGATGCTTTGCTATAGTCACACACGGGT TGGTCATTGCGGTGGTACAAGGCATGCTTGAGCCCTGGGCCACCCGAGCT AGCCCATGTTCTCGGAACTTGAGCATCACAGGATACAGGGAAGTCTTACG TCGCTGCCAGCTGCCAACCTCCTTGTTCTTAGTTCCTTGGTGTGATAAGA ACTATTATAAGAACGCTGAATTGTAAAATGGGACAACTACTAGTAAGAGA AGAGTGAATCTCACACACGTGCGATTGTACCTCGTGACAAATTATATGAA TCGCTGCCAACCCCCAGCCTGCAGACCTTGACTGCCGTACGATGGCCAGC CCCGCGGACGAGGTGAAGGACTCTGGCCCCCACCTTGTGAAGGAGGAGAA CAGCAGCGACGAGGCCAAGTCGGACGACGCCTGGAAGCGCCAGGACGATC TCGTCATCGCGCAGACCAACGAAATCAGCCAGGCTGTCTGCAACGCACAG GTGGGGTTTGCTTGCGCCCCCCCCAGCTGCTGCCTCGGGTCTTTGCGTCG CCGGACTCTTCCCGCGGTTGGCGCTGTGGGCTTCGTTTTCTCGCTCTGTG TGTCGTCGCCGGGGCTTGCACGGGCTCGCCGGCTCGCGGTTTTGTGGACA CTGCAGTTGCGTTGACGCCGTAGAGCTGCCTACTTACGCGCTCCGCACGT GGCGGATTGTTTTCCGCAGGACCTCTTGGGGCACAAGGAGCCCTTGTCAA AGCTTCTGCCGGAGTACGAGGGGAACCCGAAGCCGGGGTTCGCCAAGGGG GTGCAGGACCTGATGAAGGTGAGACAGACGCCTCCGCCGGTCGCGTGGTG ATGGTTCATATGAATTGTCGCGAGGTACAATCGCACGCGTGTGAGATTGA CTGATCACGTATTAGTAGTTGTCCCATTTAGGAATTAAGTCTTCTTGTAT CAGTTATTGTCACATCAAGGAACTAAGAACAAGGAGCGTGGTGATATAGT GACGGGCATGCCCAGAGAGGCCAGCAGGTTGTGCTACTCCGTAGTGCAGC GAGCGGTTCACCCCGTGCGGGGAGCCAGCGTGTTTGTGGTTAAGTTATTG CAATAGATGGGAGCCCAGGAGTGGCAGCGTAGAAACGGCGCCCGTACAAG CTGGTGCAGCGGAGGCGGCGGCTGATCAAACATCGACCGAACACGAGTTT TGCAGCCGTACTATGTAGCGGCAGGCCCTCGTTTAGACTCTCTAGCCTGG CGGTGCTGCTCCTGTGTTGGCGTTGTATGACTCATTCGTTTTCATCTTGC GGTGAAGGGCGGCATGCGCGCACGCCTGCCACGGACCGCCGGTGCAGCAG CAGGCATGGCAGTCGGGGCTAGAGCTCTACTCTTAGGAAGGCGGGGCTAC CGGCGAAACAAAACGATTGTACTTGTACTTTGAAGTACGTGCTACCGTCC GCCCTCTTCGTGTGTCAATTGTTTGGCGCACAGAACTGCCGCGTCGCGTC GTCGTGCCCGTCGCCGTGCCGAAGCCTCCAGCTGCTGCCGTGGACAGGTT GCTGCTTCCACGCGCTTGCAATCCCGTGTTTCGCATGTACACACACGTAG AAAGAGCAAGGGTACATATACATGCAGCATTTCCGAGCTCTAGTAACACT TCCAAAAAAGTTGATGCGCGTACACTGTGCTGCACGTATAGCTCTGATTG GAAGTGCACTACATAGTACTATCCTCTTCTTCCTCCTCGTCCTCCTCCTC GTCCTCCCCCCCTTTCCCACACAACCCTTCCCTGGCGAGCTAAGGAAGGG CCACTGTTGGGGTCTTTAGTATACTCAATGTTGTAGGAACTCTAGTACTT CGAAGTGCCTGCTTGGGTGCGTACTACACTTGTATGAGTTCGCCTGGTCT TCTCGCACCCCTTCGAAATACATCACCGTCAGAGCTATGCGTGTGGGTGC GTGCGTGTGTGCTTGCAGCCCCCCCGCCCCCACGCGCTTACATGCACGCA CACGCACGCACAGGTGCACATGCACACATGCACGCGCACACATGGACATA CGCACACACGCGCGCACAAGCATGCATGCATACACGTGCACATACACATA CACACACACACGCGCGCGCATGCCTCGCGCGCAGCGTTACCCGTCCATGC GGCGTGTACGGGGAGACGGCAACTGCTTCTACCGGTCCTTCCTGTTTGCC CTGCTGGAGGGCCTGCTCGGGGGCCTTTCGGCGGGGGAGCAGCAGCCTGC CACGGTGGAGAAGGCCCGCGCTGACCTGGGGAGGGTCAAGGCGAACATCG TGGGAAGGTGTGTTGTTTGCGCACGCTTGTGCTGTACGAGTACGAGTACT TGATACTTGGAAGTATCACGCAGTAGCGCTTTGAGCGGGTCAAGGCGAAC GTCGTGGGAAGGTGTGTTTGTTGACGCGCGCTTATGCTGTACTGTGCTTT GTATCGTGCAGTAGAGTAGCGCTCTTAGTATGCCAAGTGGTTGTTGTAAA GTATTTTCGGAAGTACTTCGGAGTAGAAGTCACAGTGCACATGTACTAGC AGTAGTCTTGGAAGTGCTTGTAAGGGCTTCTGAGTACTATTGCTTGGCGT GTTGATCGCGAGCAGAGGAAGTACTCAACATCGTTTGAAAACGGGCGAGA AAAATCAACCCTCCACACTCTGGCTGCCGCCACCACCGCCGCCGCCGCCG CCGCCGCCGCCGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC GCCGCCGCCGCCGCCGCCACGTTCCAGCAAAGCACTGCTTCTCTCCCTGG GGTACTCCGAGGTGGCCATTGACATGTTTTGGGAGGAGTTTGTGGAGGCG CTGGAGAAGCTTCCGGAGAAGACTCTGCAGCAGCTGCAGGTGAGCTGCGC GGGAGGCGGGCCCCAACGCCTGCCACTGACGCCGGAACCTGGGAACGGTT GAGGAAAGAAGGAGGGGGATTTGTTATTTGAGTGGTAGGAAAGCTGCGAG TTCCAGGCCCCGTGCCAAAAGGCTCGTCCCAGAACAGGACTCAACGGAAG CCCTTCCTTCCCTCGCAGGGCAAGAAGAAAACTGTTGTGCGTGGGTGTGT CGTATGGTTTGCCGGTTGGTACAACCCCCGGTGCGCGCACACACGCACGC ACACACAGGAGGAGTTCCGGGAGGAGGGGGGAAACTGTCGTATGGTTTGC CGGTTGGTACAACCCCCCCCCGCCCCCGCGCCCGCGCGCACACGCACGCT ACACACACAGGAGGAGTTCCGGGAGGAGGGGGGAAACTGCGAGTTCCTGG TGTGGTACTGCCGCCTGCTCACCTCGGGGTACCTGAAGCTGCACAGGGAG CGCTTCGAGCCCTTCATCGCCACGGGGGAGAGCATGGACGCCTTCTGCGC GCGGGAGGTGGAGCCCAACGGGAAGGAGTGCGAACAGGTGACGCACACAC ACGCACGCACACATGCGCACGCGCACGCATGCACACACACACACACACAC ATGCGCGTGCATGCACGCACACGCGCGTGCGCATGCACGCACACGCGCAC TTTGCACTAGCTGTGCGGCATCATGTGACGTGTTGCACGGGCGCGCGCAT GTACGTAAGTATACGGCAGTCTAGGTACAGTAGTGGCAGCCCTGGGGCCA CCTGCTGGCCTCAGCGTGCCTCGCCTGCCGGGTGTACAGCTGCTGTGCCA AGACGAGTATTCTGCCTTGTGCATGCCGAAGTGAGCATTGGCGAGGCGCC TCGTCCGAGACGGAGCACGCTGTGTAAAGAAGGGATCGTACTCTCAAGCG TGATTCCAACCTCACTTGGCCTTCCATAGCGCCAAGTAGCACATACGACA GTACAGTATAAGACACCTGCTAAGAAACAGCTGTGAAGAAACGAAGCCTT CGAACCGCACGGAACTAAAGAAACGCCGAAGGCTTCATACCCCGCGCGGT ACAAGCAATGGCGAAATGCCTCCCATGCCGGAACGGGCTGCACTATGTGC AGGCGTGCTCTTTGGGATGTCAGGCGTAGCGCTGGCTTGACGCCTGAGGA GTACGGCGAAGTCGTAGACTCTCTGGTAGACACTCTGCAGGGGGCACCAG GCACTCAGGGTAGCGGAAGCAGGGACGTCGTTGTGATGTCTCCGCGTGCT GCGATCCTCCCACAGGGCCGGTATACTTGGAAGTACGAGTACAAGTATTT CGGCGAAAAATGGCCACAAATGCCCTGTCGAGACAGCCCAAAACAAGAAA CGCCTTGATAAGAAAAAACCCTTGCCTCGAAAAAAAAGTTGAAGAAGAAA GCCTTCTCATTATCCTGAGCAGGTGTCGTATACTGTACTGCAGCGGTACT ACTTTGTACTTCGAAGTATACATGCGAGCACGTACTCATGTCGGACAGGG TTGTTATTGCCCCGTGTCCTGTGTATGCCGCCGACCGTCGGCCCCCCAGT ACACAACTCGCTTGACTGTGGTGTGTTGTGATGCGATGTCAAACTACTGA CGTATCGCATCACATCTCAGCACATCACAGTGGCATCCTCCGTGCGGGGC CGCCGGTTGGCCCCCGCAGGGTGAGGGTAGCCTTTCGGCCATTGGTCTCG CATCCCTAGAGCACCTACTACTGCCGCCGTACAGTAGCAAATGCGGGTGG CTTCTACTGTGCCTACTGTAATGCATTCTACTGTGAGTGCATACTGTAGC AATCGTACAGTGGTTTCGCTCTGCCACAGCCGGGAGAATCTCGACCGAGG CGCTATACAGTTGTAGTGGTCAATGGTCTCGGGACTGCGTCAAGGCAAGC GCAATGCCAGCGCTCGAGCACCAGCGCTTTGGAAGTGCTAATGCAGTACA TAGCGTACTTCCAAGTACTTCCCAGTACTTTCCTGAGGAGTGTGCTTCCA AGTACAGAATGAGTGCTCAAGTACTCGTTTACTCGTACAGTACAGTACTA CTGTATGTATTGTGCTCGAGCACTTTGAGAAGCACTATGACCAACCCAGT TTACCACCGTACCGTGGGCGGCCGCCGTACCGCCGCCGCCACCGCCGCCG CCGCCGCCACTGCCTCCCGCATTCAAAATACGGCGGTGGCGGCGCGCAGG TTCAAATCATCGCCCTGTGCGAGCACTTGGACACGCCGGTCCGCATCGAG TACCTGGACGGGCAAGACTTTGAGGGGCAGCTGGGGAGCATCACCCTCCC GGAGACGGGCGGGCAACCGGCCATGATGTCCCTGCTCTACCGGTGAGTGC CTCGGTGATCCGTCCCGCCGCAGGCAGCCCGCCCGCCCATCCGTCCGTCC GTCCACCCGAGGGCCCATCACTAGTAAGACAACACTCAATTCCTAAATAG GACATTTGTGCAAGTACGAGAACACACCCAATCTCACACACGTGCGATTG TACCTCGTTACAATTTGCATGATTCACGGCCCCATCCCGCTGTGCTTGGT GCTGGTATAGGGGCGCCCGTCCATCCACCCATCCATCCATCTTACCATCC GTCTATCCATGCACTCGCCTATCCACCCATGCTGTGTATTGTGGATTGAT GCCGTGGCACCCATCCGTCTTCCCGTTCCAGCTACTTGGTAGTAGTAGCT CTGGTGTGTACAGTGTAGTGCAAGTAGAGGACTTCAAAGTACTTCAAAGT AGTACTCTAGTAGTGGTAGTGGTGGTATAAGTAGTGGTAGTAGTCATAGT CGTAGTAGTGGTAGTGTATCCGTCCGCTCTCCCATCCCGCTGCCCAAGAC GAAGTTCGACGCCTTGGTCTCTCTGCGGCCAAGCGAGAGTTCTGCTCGGT CACGCTGCTGGTGACCGCATGGCTCGCGCATCCCCCGTGAATTGGCAGTT CACTGATCACCTCACATGAAAACCGACAGTCTGACAGCTCTGGTCCCCCC CATACGCCCGCACCGCCGCACGACATGCCCCCCCCCCTGACTCCCATTTC GATGGTGGTGGCCTCGGCGGCCTCGGGCGGTGGCGGCGGCGGTGGCGGCG GGCATGACTGACTGCAACTGTGGCGACTGCGGCGCCGACCGGGCCGGCGA TTGCTTCATGGACTGGCACTTCGACAGGCCTGGGCATTACGACATCTTAT ATGCAACATGACCGAGGGGGTGTGTTTACAGGATGAATATGCTAGGACTT GAATAACTGCTATGCCCTGCAAGTGAAGGCGAGTGAAAGGACGGGCTTCC GGGGGTGGGGCCCTGAACTCGCGTAGGTAGGGACACCTCTTCTTTCCCAC TCGCTCGTTTACCTTCTTGCTAGAAACTGCTTGACTTGAGACTACCTGAG GGGAGGCCGGGCGTAGGGAAGGGCTCCAAGTGGGCCCGGGGGGAGGGACG GCCCGGGTCTGCCCTTGCAGGCCACCACTACAGCTACAGGCCATGTCGGC CCTGCCCCCGGGGGGCCTGCCGCAGCTCTCTCAGCCCCCGCCCACTCGTC CGCCTTGAGGCACGCACACGCCTGCGCATGTACCGAGTACAGTACTTGAA CGAGTGAATGTGAACTTATGTTCGCAAGTAATGCGCGGTATCATAGCACC CCGCAGCGGCTGGCGGCGGCGGCAGCGGCAATGGCGGCGGCAATGGCGGC GGCCTGTGCGCGTGGCGCGAGGCAGTGCCCATGCTGGCAGCAGATGGCTT AGGAGCCGGGCTGCCAGGGTCCGCCGAGTTGGGGGGAAATCCACTTTTTT GCCAGTGCCCGGTGCCCAGCGAGCAGCTATTGCAAGCTCTGACCGGCTGG TGGCACCCCGGACGCTGTCGCGGTGGCGCAGAACCGGCAGCGGGTTGTCA CGGTCAGCCAGCCTTGGATTGGGCAGCGGGGTTGTGCCGCTCAAGGGGAG CCATGACCTCCCGAACATCTCTCGCGTAGTGTGCTGTAGCAGTTAAAAGG GGAGCATGACCTCCCGAAGATCTCTCGCGTAGTGTACTGTAGCAAGTAAC AGTAGAGTAGTAGATGCGCTGCGTGCAGACGGGTTGTGCCTGCATCGCAC ACGTGTGCGGGTGCGCTTCACAGCCCTCGCGCGCTCCTCGTGTCTTGTAC AGTACAGTTGCTGCAGTGCATTTTGTTAGAAGTACTTCCAAAGTATTTGG GAAGTGCTCGGAGGCGCAAAGTAGGTACAGTATTTGATTACATACGGTGC GCACCCTCAAAGCAACAGACTCCAGGACTGCACAGGAAGAGCTCTAGAGT GCTCCGAAGCAGTGCTCTGAAGTATTGTAGTGCTCTGAAGTGCTGTAGTA CGGGGGTAGTACGCGCACAGGCCTACAGAACTGCAGAAGTCGCCGTGCTT GCGCGTTATAGTACACCCTCTCGCACCCAGTATTCGTTAGATGGCACTCT GGCAAGTTGCACCGAGAACAGGTGTACGTAGGGTTAATAAAGTACTCGAG TACCACTTCGAAGCACCTGCTGTACTTGTCCTTGCAGTATATGAAGTCGG TACTTCGAAGTACTGTATACCTACAGTACTAGTCTACTGCATGCTCCTCC CCGGCGACTCGATTGGCCCTTCAGGCTGACCTCCGGGGGTCGCCGATGCA GCCTAAGGTCCGATTCTGCCATGCCAGTGCTCAAGGTACTTGGAAGTACT CGTTGGTTGCCACCTGGAATGGTGCAGGGGCAATTACAGGCGAGATCAAA GGTACAGCTACAACCACCTGCTCCTAAGTATGTTGGGATGGCATGGCCGA GGGGCTTGCACAGGATGCCAGTGAGGCAAGACAAGCCTTAGGGAACTTCC CAAATTGAGGCATTGACTAGACTGCAAACCCATCAGGCAAGGCCACAGAA AATTGCGAGCGAGCATCCAAGTCTGCCATAGCCGAAAACGAACGGGGGGA ACACAGCACC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:693671..701830+

>mRNA_S-ischiensis_contig8.19326.1 ID=mRNA_S-ischiensis_contig8.19326.1|Name=mRNA_S-ischiensis_contig8.19326.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2034bp|location=Sequence derived from alignment at S-ischiensis_contig8:693671..701830+ (Schizocladia ischiensis KU_0333)
ATGCACGCCTCCGGCGGCCTGAAGATCAGCGTTTGTGATGAAGAAGTGAG
AGGTTTTCGGCACCAGAAGACGGTCTGCAGTGAAGGGATTGCGCCGATGC
ACGCCTCCGGCGGCCTGAAGATCAGCGTTTGTGATGAAGAAGTGAGAGGT
TTTCGGCACCAGAAGACGGTCTGCAGTGAAGGGATTGCGCCGCCTGCAGA
CCTTGACTGCCGTACGATGGCCAGCCCCGCGGACGAGGTGAAGGACTCTG
GCCCCCACCTTGTGAAGGAGGAGAACAGCAGCGACGAGGCCAAGTCGGAC
GACGCCTGGAAGCGCCAGGACGATCTCGTCATCGCGCAGACCAACGAAAT
CAGCCAGGCTGTCTGCAACGCACAGCCTGCAGACCTTGACTGCCGTACGA
TGGCCAGCCCCGCGGACGAGGTGAAGGACTCTGGCCCCCACCTTGTGAAG
GAGGAGAACAGCAGCGACGAGGCCAAGTCGGACGACGCCTGGAAGCGCCA
GGACGATCTCGTCATCGCGCAGACCAACGAAATCAGCCAGGCTGTCTGCA
ACGCACAGGACCTCTTGGGGCACAAGGAGCCCTTGTCAAAGCTTCTGCCG
GAGTACGAGGGGAACCCGAAGCCGGGGTTCGCCAAGGGGGTGCAGGACCT
GATGAAGGACCTCTTGGGGCACAAGGAGCCCTTGTCAAAGCTTCTGCCGG
AGTACGAGGGGAACCCGAAGCCGGGGTTCGCCAAGGGGGTGCAGGACCTG
ATGAAGCGTTACCCGTCCATGCGGCGTGTACGGGGAGACGGCAACTGCTT
CTACCGGTCCTTCCTGTTTGCCCTGCTGGAGGGCCTGCTCGGGGGCCTTT
CGGCGGGGGAGCAGCAGCCTGCCACGGTGGAGAAGGCCCGCGCTGACCTG
GGGAGGGTCAAGGCGAACATCGTGGGAAGCGTTACCCGTCCATGCGGCGT
GTACGGGGAGACGGCAACTGCTTCTACCGGTCCTTCCTGTTTGCCCTGCT
GGAGGGCCTGCTCGGGGGCCTTTCGGCGGGGGAGCAGCAGCCTGCCACGG
TGGAGAAGGCCCGCGCTGACCTGGGGAGGGTCAAGGCGAACATCGTGGGA
AGCAAAGCACTGCTTCTCTCCCTGGGGTACTCCGAGGTGGCCATTGACAT
GTTTTGGGAGGAGTTTGTGGAGGCGCTGGAGAAGCTTCCGGAGAAGACTC
TGCAGCAGCTGCAGCAAAGCACTGCTTCTCTCCCTGGGGTACTCCGAGGT
GGCCATTGACATGTTTTGGGAGGAGTTTGTGGAGGCGCTGGAGAAGCTTC
CGGAGAAGACTCTGCAGCAGCTGCAGGAGGAGTTCCGGGAGGAGGGGGGA
AACTGCGAGTTCCTGGTGTGGTACTGCCGCCTGCTCACCTCGGGGTACCT
GAAGCTGCACAGGGAGCGCTTCGAGCCCTTCATCGCCACGGGGGAGAGCA
TGGACGCCTTCTGCGCGCGGGAGGTGGAGCCCAACGGGAAGGAGTGCGAA
CAGGAGGAGTTCCGGGAGGAGGGGGGAAACTGCGAGTTCCTGGTGTGGTA
CTGCCGCCTGCTCACCTCGGGGTACCTGAAGCTGCACAGGGAGCGCTTCG
AGCCCTTCATCGCCACGGGGGAGAGCATGGACGCCTTCTGCGCGCGGGAG
GTGGAGCCCAACGGGAAGGAGTGCGAACAGGTTCAAATCATCGCCCTGTG
CGAGCACTTGGACACGCCGGTCCGCATCGAGTACCTGGACGGGCAAGACT
TTGAGGGGCAGCTGGGGAGCATCACCCTCCCGGAGACGGGCGGGCAACCG
GCCATGATGTCCCTGCTCTACCGGTTCAAATCATCGCCCTGTGCGAGCAC
TTGGACACGCCGGTCCGCATCGAGTACCTGGACGGGCAAGACTTTGAGGG
GCAGCTGGGGAGCATCACCCTCCCGGAGACGGGCGGGCAACCGGCCATGA
TGTCCCTGCTCTACCGGCCTGGGCATTACGACATCTTATATGCAACATGA
GCCTGGGCATTACGACATCTTATATGCAACATGA
back to top