mRNA_S-ischiensis_contig8.19319.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19319.1
Unique NamemRNA_S-ischiensis_contig8.19319.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Match: A0A5A8D6G0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D6G0_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.090e-17
Identity = 73/223 (32.74%), Postives = 103/223 (46.19%), Query Frame = 2 
Query:    2 RGLNSMADSLSYQSFLSWAADFGLSGA-LLSTLELGDIYMSCLAFSGGQGDGTNDPPLYPSLEAAAAAAEGEPVAYGHDGNGXXXXXXXXTPPPACPGHIRPLSYPEFLEAILRCALVGFQGVGXXXXXXXREGDPADKLRALLVYTWRHVHPSANLALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPAPARADAVAVLTRLLAAG 667
            R  NSM ++LSY  FL +AADF LS + +LSTLELG IY++ L                          E +P A                       HIR L++ EF +A+LRCA+V +  +         +   ADKL+ L +Y WR ++ S   A+      + R   + + G LM G  L N+R  ALW+ + FRD+ SP A       AVL RL+ +G
Sbjct:  216 RASNSMKNALSYAGFLKFAADFDLSSSVILSTLELGQIYLASLR-------------------------EVDPEA-----------------------HIRKLTFDEFWDALLRCAIVAYSKIS--------KSGVADKLKGLFLYMWRAINRSVPRAV------TERRSVTTYAGDLMSGAMLFNKRFTALWQDDDFRDYLSPEAAEEESGRAVLRRLMHSG 376
[Close]
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Match: A0A812QPX7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QPX7_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 4.750e-14
Identity = 66/223 (29.60%), Postives = 94/223 (42.15%), Query Frame = 2 
Query:    5 GLNSMADSLSYQSFLSWAADFGLSGA-LLSTLELGDIYMSCLAFSGGQGDGTNDPPLYPSLEAAAAAAEGEPVAYGHDGNGXXXXXXXXTPPPACPGHIRPLSYPEFLEAILRCALVGFQGVGXXXXXXXREGDPADKLRALLVYTWRHVHPSANLALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPAPARADAVAVLTRLLAAGA 670
            G+N+M  +L Y  FL +AADF LS   +LST ELGDIY+S L  +                       E EP                          +R LS+ EF EA++RC+L  +  +            P D++R L +Y WR +  S        R  S R   + + G L+ G  L N+R  A+W  +G+RD+ +P          VL RL +A A
Sbjct:  200 GVNTMKSALGYPEFLKFAADFDLSNTVILSTRELGDIYLSALKLT-----------------------EHEPT-------------------------VRKLSFDEFWEALVRCSLRAYSKIS--------HSTPLDRIRGLFLYMWRAITRSV------PRAFSDRRNVTTYAGDLLSGAMLFNKRFTAMWAEDGYRDYLTPAPIKEESGFDVLARLTSADA 360
[Close]
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Match: A0A7S1C9I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9I7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.410e-13
Identity = 65/220 (29.55%), Postives = 96/220 (43.64%), Query Frame = 2 
Query:    2 RGLNSMADSLSYQSFLSWAADFGLSGA-LLSTLELGDIYMSCLAFSGGQGDGTNDPPLYPSLEAAAAAAEGEPVAYGHDGNGXXXXXXXXTPPPACPGHIRPLSYPEFLEAILRCALVGFQGVGXXXXXXXREGDPADKLRALLVYTWRHVHPSANLALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPAPARADAVAVLTRLL 658
            R LN+M ++L YQ FL  A+DF LS + LLSTLE+GDIY+S                      A  A+++G+                          ++R LS+ EF EA++R ALV +  +         +    DK+R L +Y WR ++      +        R   S + G L+ G  L N+R  A W  + +RD+ SP          VL+RLL
Sbjct:  176 RRLNTMKEALGYQEFLKLASDFELSSSVLLSTLEIGDIYLS----------------------AVKASSDGD--------------------------NVRKLSFNEFWEALVRAALVAYSKIS--------DATVIDKIRGLFLYMWRAINKHVPERME-------RRDVSTYAGDLLAGAMLFNKRFTAQWGADDYRDYLSPEVARDESGATVLSRLL 332
[Close]
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Match: A0A813AHM0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AHM0_9DINO)

HSP 1 Score: 78.6 bits (192), Expect = 4.030e-13
Identity = 68/225 (30.22%), Postives = 97/225 (43.11%), Query Frame = 2 
Query:   17 MADSLSYQSFLSWAADFGLSGA-LLSTLELGDIYMSCLAFSGGQGDGTNDPPLYPSLEAAAAAAEGEPVAYGHDGNGXXXXXXXXTPPPACPGHIRPLSYPEFLEAILRCALVGFQGVGXXXXXXXREGDPADKLRALLVYTWRHVHPSANLALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPAPARADAVAVLTRL-LAAGAETGPG 685
            M D+L Y  FL +A+DF LS + +LSTLELGDIY+S +                            +PV    DG+                  IR L++ EF EAI+R ALV +  +              DK++ L +Y WR ++ S   A N       R   S + G L+ G  L N+R  A W  + ++D+ +P  P     + VL R+ LA   E G G
Sbjct:    1 MKDALGYNEFLKFASDFDLSNSVILSTLELGDIYLSSI----------------------------KPV----DGDTT----------------IRKLTFVEFWEAIVRAALVAYSKISTATV--------VDKIKGLFLYMWRRINQSVPRAFN------ERRNVSTYAGDLLAGAMLFNKRFTAQWAADNYKDYLAPEEPELPKGLDVLKRVSLAITGEAGGG 163
[Close]
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Match: A0A7S1UAF1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAF1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.400e-8
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = 2 
Query:  299 RPLSYPEFLEAILRCALVGFQGVGXXXXXXXREGDPADKLRALLVYTWRHVHPSANLALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPAPARADAVAVLTRLL 658
            R LS+ EF EA++RCALV ++                DK + LL+  WR +  +    +N +   S     S +KG L+RG QLLNER +  W+ + +RD+ + PA  +    + L  LL
Sbjct:   34 RKLSFREFWEALVRCALVAYRN--------DTLASDLDKFQGLLLSIWRTLQSAVPGIVNSSSMTSG--SRSTNKGGLLRGAQLLNERFIQRWQEDNYRDYLALPAAPKISGRSALKTLL 143
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5A8D6G0_CAFRO2.090e-1732.74Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812QPX7_9DINO4.750e-1429.60Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1C9I7_9STRA3.410e-1329.55Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A813AHM0_9DINO4.030e-1330.22Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1UAF1_9STRA4.400e-833.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:632508..637500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1207
Cds size768
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817256.374773-UTR-S-ischiensis_contig8:632507..6329301622817256.374773-UTR-S-ischiensis_contig8:632507..632930Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 632508..632930 -
1695740974.21906-UTR-S-ischiensis_contig8:632507..6329301695740974.21906-UTR-S-ischiensis_contig8:632507..632930Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 632508..632930 -
1622817256.4437668-UTR-S-ischiensis_contig8:637484..6375001622817256.4437668-UTR-S-ischiensis_contig8:637484..637500Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 637485..637500 -
1695740974.2928898-UTR-S-ischiensis_contig8:637484..6375001695740974.2928898-UTR-S-ischiensis_contig8:637484..637500Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 637485..637500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817256.386075-CDS-S-ischiensis_contig8:632930..6329491622817256.386075-CDS-S-ischiensis_contig8:632930..632949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 632931..632949 -
1695740974.2361815-CDS-S-ischiensis_contig8:632930..6329491695740974.2361815-CDS-S-ischiensis_contig8:632930..632949Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 632931..632949 -
1622817256.3969123-CDS-S-ischiensis_contig8:633206..6334481622817256.3969123-CDS-S-ischiensis_contig8:633206..633448Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 633207..633448 -
1695740974.2478387-CDS-S-ischiensis_contig8:633206..6334481695740974.2478387-CDS-S-ischiensis_contig8:633206..633448Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 633207..633448 -
1622817256.4086654-CDS-S-ischiensis_contig8:634326..6347211622817256.4086654-CDS-S-ischiensis_contig8:634326..634721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 634327..634721 -
1695740974.2614121-CDS-S-ischiensis_contig8:634326..6347211695740974.2614121-CDS-S-ischiensis_contig8:634326..634721Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 634327..634721 -
1622817256.419108-CDS-S-ischiensis_contig8:636049..6361371622817256.419108-CDS-S-ischiensis_contig8:636049..636137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 636050..636137 -
1695740974.270655-CDS-S-ischiensis_contig8:636049..6361371695740974.270655-CDS-S-ischiensis_contig8:636049..636137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 636050..636137 -
1622817256.429645-CDS-S-ischiensis_contig8:637460..6374841622817256.429645-CDS-S-ischiensis_contig8:637460..637484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 637461..637484 -
1695740974.2839835-CDS-S-ischiensis_contig8:637460..6374841695740974.2839835-CDS-S-ischiensis_contig8:637460..637484Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 637461..637484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19319.1prot_S-ischiensis_contig8.19319.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 632931..637484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19319.1

>prot_S-ischiensis_contig8.19319.1 ID=prot_S-ischiensis_contig8.19319.1|Name=mRNA_S-ischiensis_contig8.19319.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=256bp
MADSLSYQSFLSWAADFGLSGALLSTLELGDIYMSCLAFSGGQGDGTNDP
PLYPSLEAAAAAAEGEPVAYGHDGNGGGDGGGGATPPPACPGHIRPLSYP
EFLEAILRCALVGFQGVGGGGGGGGREGDPADKLRALLVYTWRHVHPSAN
LALNGARGGSARARSSIHKGALMRGIQLLNERLLALWRLEGFRDFQSPPA
PARADAVAVLTRLLAAGAETGPGSAPGPGSGEGASTVREGRRPDGGVTGA
ATAMA*
back to top

mRNA from alignment at S-ischiensis_contig8:632508..637500-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19319.1 ID=mRNA_S-ischiensis_contig8.19319.1|Name=mRNA_S-ischiensis_contig8.19319.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4993bp|location=Sequence derived from alignment at S-ischiensis_contig8:632508..637500- (Schizocladia ischiensis KU_0333)
CAGGGGGCTCAACAGCATGGCGGACTCCTTGTCCTATCAGGTGGGTTGGG
CGGACGGGGGGCGAGCGCGTTGTTGGTTGCGCAGTCCTGCTCCGTCTCGA
CCGAGGCGTACGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGT
ACATATATATACTTGGAAGTATATATAGTGTGTGTTGGCGGCCCTGGCAG
CAAGGCGGTGGTCTCGGGGTGGTCCGCGCGGTGTCCACCTACCGTAATCG
GCGAAGAGATATTGCCCCCACGGGACAATTTTCGGGGGAATATATCTGGC
CGGGAGGGTCCTGAACTGTCCCGAAAACTCTCCAAAAAGTTGCCCCGGGT
CCTGAGGGAGATTTTCCGAGTTTTCCCGCGCGAATCCGACCAGTATTCGG
CGAGAAAGGTTCTCCCAAAAATTGGCACGGGGGGGCAAGATCTCTCCACC
GATTACGGTAGTTGGGCGTGTTTATAGAGTAGCGTGCCGCTGTCCGCTAA
GGTCCGTAAGTGCACCTACTTGGGCGTGTTGTAGAGTACTCTGCTGTAGC
GTGCCGCTGTCCCCTAGGGTCCGTGAGGAGGGCGCACGCACAGGGACGTA
AGAAGCGCGTTACGTCCAAGCACCGGATGAAATCGACTGCACCCTCCCGC
CCCCCCCCCCCTTTCCTTCCCCCCCCCCGTCCCCCTCTGCACCCCCGCCC
ATGCACCGTCGGCCGTCGGCCGTCGCCCGCGGGATAGCGGCATTCACGCG
GCGCCCATGGTAGCAGGCTATATGCTGATCTATGTGCATATATATATATA
TATATATGTACTCACGTTGTGCTTGCCGTAGTCCCGATACCATTGACCAC
GCGTATCAACGTACGGTAAAAAAACAAGTGCTTTTGGGGCGGGGCGTTGG
CCGCATGGGACAGGCGCTCTTGTAGATGGCATATGCTTGTGCTAGCTTCT
GCAAGTACAAGCGGGCGATACATGTATGCCAAGTTCCTCTTCCCATTCTT
GTAAAAAACTACTGTACGAGTACAGTATTGTACAGTACAGCAGTGCGGGC
CCCAGGCTCACCTGTCTATTCGTTGCCCACGTACTCGTACACCCCATGAC
AGCAAACCGCCCGAGCACATTGTCGCAACCACGTGCGACGCGGGCCGGCA
GCGGCCAGCTGTGTCCGGTTGGTTGGTCGCCCGGCCGTCACGGGGCGACA
AGCTGGCGATCGTTTTCGTGCTGCCTGCAGTGGACGAGTGCGTGGATGAA
TGAATGCACGCCACGCAAACGCCTACCTGCCCGCCGGACACAAACGCGCC
CTGGCACCCACCCACGCACGCACGCACGCACGCATGCACGCACGCACGCA
CACACGCACGCAGTCGTTTCTGTCGTGGGCGGCCGACTTTGGGCTGTCGG
GCGCGCTGCTGAGCACGCTGGAGCTGGGGGACATCTACATGTCGTGCTTA
GGTGGGTACGGTATGAGTACGAGTGTCCGGGAGCGGCGGGGGCATGAGCG
TGCGGGACCTGGGGACTGTTTTTTATTTTTGTTTTTTTTGCGTTCCTTCT
TCTGCTTCTTCTTTTGGTCGAGGCCGCTTGCACGTACTGCACAGGACCTG
GAGTGTGCGCCGTACGTAAGATATGGGGGGGATCACTTCAAAAGTACTTG
AAAGTGCTTGAAACTACTCTACAAGTGCTTGTTAAAAAAATTTCTTCAAA
GTATGTCTGAGCTGGGGGGGTGCGTGGGGGCAGTGGCTGCCTCCTCTCAC
TGGCTTGCGAGCAGGAGGGGATTTCGGTCCGCGGGCCATTGGCCCGAAAC
GCCACGATGCTTTATTTTTCCTTTTTTTTCCCGAAAGATTGAAGTAGTGG
CACCCGACAAACACTTCAGAGCGCTTTCCAGACGTATACCTACCATGTTT
CCAACGGCTTCTCTTCGGAGAAAGTAGCTAGAGCAGATGCTATACTTTGA
AGTAGGTACAGTAGTTAGTTGACACCTGAACGTGGCTCATGAGCACTGCA
AACTACAGTACGGTACTCTTCAAGTTTATTTCAAGACATGTACTGTTGTT
CCAAGCAAGCGGTTCCTGAGGTGGTAGGCGTGTGCGTCCCGGGCTTGCAA
TCGCACGGCGGCCGGTTTTCCCTCCAGAGGCCAAGGGGCATCTGCATCTG
CAACATATCCTGGGCATCAAACGCCCGTGTCTTTCGCTGCTACAGTACTC
GAGTACTTCCAAGCACAAGGGATTCCCTGTTTTGATCAGCGGACCGGAAG
TCAGAGCCCTGCTTCGATGGGTCAAGGTCCAATAAGGGGGCGTAAGTAGC
CCCAGGTCCGAAGCCCCCACTTACTGTCGCAAACGCTTCTGTGACCCCGT
AGTTATTGTTTGCCCCAGCAATATAGTACTTGGAAGTACACCGTAGGTAG
GTAGGGGCGCTTGCTGGCCTGAGCGCCGTGAACCGACAGTTTTCACGGAT
ATATATACAGCCTTTCCCAACGGCCCTCATCGCCGACCCTGTTGCCCCCC
CTTGCCGCTCACATCAGCCCCCGCCACTCCCTCTGCTGGCAAACCTCGCC
CCGCTGCCACCCACCCCCCACCCGCACCCCCTGCCGCCAGTGATGGAATG
TCTACGCAAATCAACCTATTTATCGACAGTACTGATCTACTTTCGGAAGT
ACGTATCATCGATCGTCGATATTCGATAGTTGATCCACACTAAATCCAAG
TAGCTAGTAGCGCCCCCCACAAAATCAGCCGAGCCCGATAACTATCTACT
GATCGATATTGCATCACTGCCCGCCGCAGCCTTCTCCGGCGGCCAAGGCG
ATGGCACCAATGACCCCCCCCTCTACCCCTCGCTGGAAGCGGCGGCGGCG
GCGGCAGAAGGGGAGCCCGTGGCCTACGGGCACGACGGGAACGGCGGCGG
CGACGGCGGTGGGGGCGCAACGCCGCCGCCGGCTTGCCCCGGCCACATCC
GGCCCCTCTCCTACCCGGAGTTCCTCGAGGCGATACTGCGGTGTGCGCTC
GTGGGTTTCCAGGGGGTGGGAGGCGGTGGCGGCGGCGGCGGTCGCGAGGG
TGACCCGGCGGACAAGCTGCGGGCGCTACTGGTGTACACCTGGCGGCACG
TACACCCGTCGGCCAACCTGGCGCTGAACGGCGCGCGCGGCGGGAGCGCG
CGCGCGCGCTCCAGCATTCACAAGGCGAGAGATGGTACTCTACTTGGTAT
GAACAGGAACAACACGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCA
ACAGTGGCCCTTCTGCTGTAGTAGTATGAGTATTAACAGGAACAACACGC
GGCGAGGTGCGGGCCACGTCCCTACAGTAGAGACCTCAGCAGCGGCCCTT
TCTTACAGCTCGCCCGGGGGAATTGGTACTTGAGACCGACCGCTTTCTTT
TCTTGTGTGTCTTGCCGCCGCCGTTGCCGTTGCCGCCACGTCTGGCGCCC
CCCCTGGAGGCCCCCGCGCGGGGGCTTTTGGTGCGGCAATTGCCGTGGGC
GTGGTGGAGGGAGGTGCTTGCTCGTGGGCTCCTGGGCTCCTGGAGCATTG
GGGGGGGGGGTACCGCTTGCAGTAGCCAGTTTGCGAAACGGCGTAGTGTA
CCTTCCAAGTACTTGGAAGTACTACAGTGTACTGTACAAGTACAACAGTG
TAGTGTGCTTCCAAGTACAACAGCGGTGGCATGAGCATCTCTTCTGGCCC
TCATTCCGTACATTTACTGGGATGTCGTGCACGATCAACCTCGCGGCGCA
TCCCCCGCGCGTATGGCCAGTCGAATCCCACCCCCCCACGCCCCCACCCC
CGCCAGCCAGCCTCCCAAAAACGGAGGAGACAGTGCTCTCCCTCCAAAGA
GAAAGCTCACCCCTGTGGGACGCATGGTCATTGGCCATGCGGCAATATAT
ATATGTGTACTCGCATGGTGCTTGCCGTAGTCCCGAGACCATTGACCACG
CGCCTCGGTCAAGACGGAGCAGGACCCCTCCCTCCCCTGGCAGTCGAAAA
GTATCTCACGAGCAACCCCCCCCCCCCCCCCTCCTCCTCCCTCCCCTCCC
AGGGCGCGCTCATGCGGGGCATCCAGCTCCTCAACGAGCGCCTGCTGGCC
CTCTGGCGTCTCGAAGGCTTCCGGGACTTCCAGAGCCCCCCCGCGCCCGC
CCGGGCCGACGCCGTGGCCGTGCTCACCAGGCTCCTCGCCGCGGGGGCAG
AGACGGGCCCGGGGTCGGCGCCGGGGCCCGGGTCTGGAGAGGGGGCCTCC
ACCGTCAGGGAGGGCCGACGGCCCGACGGTGGCGTGACTGGCGCAGGCTA
GACGATGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCTC
GGGCAGGCGCTTCCTGGGCGCACACCCCAGCGGCGGTATGCGACGGGGTA
GCCGGGGAGCTTGAGTGTTCGCGTGGGGAGAGCCGCTCCGTTGGGTCACG
GCCCTGGGCGTGCCACCCACTGCGTTCAGGCTCGGTTTGGGTGGGGCCGC
CCCTGCCGCTGTCTCTGCTGCCGCTGCCGCTGCTGCTGCTGCTGCCGCCG
CCGCCACCGCCATGGCTTGACCCTTTTTTTGGCCGCCTGGGGCGCGCCTT
GCCTGCTGCAGCATGTACAAGTACTTCCTCGAAGTACGTACAAGAATCCC
AGGTGCTAGAGGTGCCTGGTGCTGTGCTGCAAGTGTTAGTCTGCACACGT
TGCGCGATGCGATACGCAGTTCGAGACAGGTCTGTCGTCGCTCGGGCAAG
CGGCCGTGCTCAGGCGGTTGAAAACGCCCTCCACTCCCCGGTGTAGGAGA
ACCCAGCTGCAGTGGACGCGTGTTTTGGCCGTAGCATCGTCCAGCCACCT
GACTCAGCACTCAGCTGGCGACTACAGTACCTACTGTGTACATGCGTACT
GTACTACACCTGTATTTAGCACACAACTACTTCCAAGTACAGTATACGCC
ATGCCTGACGCCATGTTAGTAATACAAACACACTTGAAACAGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:632508..637500-

>mRNA_S-ischiensis_contig8.19319.1 ID=mRNA_S-ischiensis_contig8.19319.1|Name=mRNA_S-ischiensis_contig8.19319.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1536bp|location=Sequence derived from alignment at S-ischiensis_contig8:632508..637500- (Schizocladia ischiensis KU_0333)
ATGGCGGACTCCTTGTCCTATCAGATGGCGGACTCCTTGTCCTATCAGTC
GTTTCTGTCGTGGGCGGCCGACTTTGGGCTGTCGGGCGCGCTGCTGAGCA
CGCTGGAGCTGGGGGACATCTACATGTCGTGCTTAGTCGTTTCTGTCGTG
GGCGGCCGACTTTGGGCTGTCGGGCGCGCTGCTGAGCACGCTGGAGCTGG
GGGACATCTACATGTCGTGCTTAGCCTTCTCCGGCGGCCAAGGCGATGGC
ACCAATGACCCCCCCCTCTACCCCTCGCTGGAAGCGGCGGCGGCGGCGGC
AGAAGGGGAGCCCGTGGCCTACGGGCACGACGGGAACGGCGGCGGCGACG
GCGGTGGGGGCGCAACGCCGCCGCCGGCTTGCCCCGGCCACATCCGGCCC
CTCTCCTACCCGGAGTTCCTCGAGGCGATACTGCGGTGTGCGCTCGTGGG
TTTCCAGGGGGTGGGAGGCGGTGGCGGCGGCGGCGGTCGCGAGGGTGACC
CGGCGGACAAGCTGCGGGCGCTACTGGTGTACACCTGGCGGCACGTACAC
CCGTCGGCCAACCTGGCGCTGAACGGCGCGCGCGGCGGGAGCGCGCGCGC
GCGCTCCAGCATTCACAAGCCTTCTCCGGCGGCCAAGGCGATGGCACCAA
TGACCCCCCCCTCTACCCCTCGCTGGAAGCGGCGGCGGCGGCGGCAGAAG
GGGAGCCCGTGGCCTACGGGCACGACGGGAACGGCGGCGGCGACGGCGGT
GGGGGCGCAACGCCGCCGCCGGCTTGCCCCGGCCACATCCGGCCCCTCTC
CTACCCGGAGTTCCTCGAGGCGATACTGCGGTGTGCGCTCGTGGGTTTCC
AGGGGGTGGGAGGCGGTGGCGGCGGCGGCGGTCGCGAGGGTGACCCGGCG
GACAAGCTGCGGGCGCTACTGGTGTACACCTGGCGGCACGTACACCCGTC
GGCCAACCTGGCGCTGAACGGCGCGCGCGGCGGGAGCGCGCGCGCGCGCT
CCAGCATTCACAAGGGCGCGCTCATGCGGGGCATCCAGCTCCTCAACGAG
CGCCTGCTGGCCCTCTGGCGTCTCGAAGGCTTCCGGGACTTCCAGAGCCC
CCCCGCGCCCGCCCGGGCCGACGCCGTGGCCGTGCTCACCAGGCTCCTCG
CCGCGGGGGCAGAGACGGGCCCGGGGTCGGCGCCGGGGCCCGGGTCTGGA
GAGGGGGCCTCCACCGTCAGGGAGGGCCGACGGCCCGACGGTGGCGTGAC
TGGCGCGGCGCGCTCATGCGGGGCATCCAGCTCCTCAACGAGCGCCTGCT
GGCCCTCTGGCGTCTCGAAGGCTTCCGGGACTTCCAGAGCCCCCCCGCGC
CCGCCCGGGCCGACGCCGTGGCCGTGCTCACCAGGCTCCTCGCCGCGGGG
GCAGAGACGGGCCCGGGGTCGGCGCCGGGGCCCGGGTCTGGAGAGGGGGC
CTCCACCGTCAGGGAGGGCCGACGGCCCGACGGTGGCGTGACTGGCGCCG
CCACCGCCATGGCTTGACGCCACCGCCATGGCTTGA
back to top