mRNA_S-ischiensis_contig8.19313.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19313.1
Unique NamemRNA_S-ischiensis_contig8.19313.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: D7FKR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.350e-36
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:   58 MSAMQAGLGPHFMWGYTPARDLLEGISNSRDEEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            MS  + G+GPH MWG TPA+DLL    +    + N+L+CQPGDIGHVL+TI +RR HP   I+LY+WERQIEVLARHLLLLQV  DWE PIRQRAN FLE
Sbjct:    1 MSQEREGIGPHAMWGCTPAQDLLR--DSPLKGQANILICQPGDIGHVLRTIGTRRGHPQHTIHLYIWERQIEVLARHLLLLQVAQDWELPIRQRANVFLE 98
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A2D4CD75_PYTIN (DUF4470 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD75_PYTIN)

HSP 1 Score: 101 bits (252), Expect = 1.460e-25
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   61 SAMQAGLGPHFMWGYTPARDLLEGISNS----RDEEVNVLVCQPGDIGHVLKTICSRRKH-----PAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            S M   LG   MWG++PA +LLE +  +     +E VN+L+  PGDI HVL T+  RR+H     P + +++YV+ER +E LARHLLL  +  DW+ P+RQR NTFLE
Sbjct:    6 SGMMMSLGTVNMWGFSPAFNLLERVKQASQQDENEPVNLLLIGPGDIRHVLHTVARRRRHASKDAPLRPLHIYVYERSVETLARHLLLWAIAQDWDLPLRQRCNTFLE 113
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A2D4CK38_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CK38_PYTIN)

HSP 1 Score: 100 bits (248), Expect = 8.600e-23
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   61 SAMQAGLGPHFMWGYTPARDLLEGISNS----RDEEVNVLVCQPGDIGHVLKTICSRRKH-----PAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            S +   LG   MWG++PA +LLE +  +     +E VN+L+  PGDI HVL T+  RR+H     P + +++YV+ER +E LARHLLL  +  DW+ P+RQR NTFLE
Sbjct:    6 SGVMMSLGTVNMWGFSPAFNLLERVKQASQQDENEPVNLLLIGPGDIRHVLHTVARRRRHASKDAPLRPLHIYVYERSVETLARHLLLWAIAQDWDLPLRQRCNTFLE 113
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A6A5AKG1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKG1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.390e-22
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   79 LGPHFMWGYTPARDLLEGISNSR------------DEEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            LG H MWG++P  DL EG+S  R             E + VLV  PGDI HVL TI   R+   + +++Y++E+  E LAR LLLLQ+V+DWE P+RQR NTFLE
Sbjct:   13 LGTHGMWGFSPGFDLQEGVSEPRADSNQVDASTSSSEPLCVLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLE 117
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A8K1C6J5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J5_PYTOL)

HSP 1 Score: 100 bits (249), Expect = 2.370e-22
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   61 SAMQAGLGPHFMWGYTPARDLLEGISNSRDEE--VNVLVCQPGDIGHVLKTICSRRKHPAQR--INLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            S +   LG   MWG++P+ D+ +G+++   E+  +N+L+  PGDI HVL TI  RR+   Q   IN+YV+ER +E LARH+LL+Q+  DWE P+RQR +TFLE
Sbjct:    6 SGVMMSLGTVNMWGFSPSFDMQDGVASPHKEDTPLNLLLIGPGDIRHVLHTIAHRRRWGKQLRPINIYVYERSVETLARHMLLMQIAQDWELPLRQRVSTFLE 108
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A7S2BEA7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEA7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.640e-22
Identity = 50/105 (47.62%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   64 AMQAGLGPHFMWGYTPARDLLEGISNSRDEE------VNVLVCQPGDIGHVLKTICSRRKHPAQ-RINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            A ++G+G H +WG +PA DLL+ + ++  ++      +++LV QPGDI H+L +I  RR+ P    ++ Y+ E+ +EVLARHLLLLQ+  DWE PIRQRAN FLE
Sbjct:    2 AAESGMGIHSLWGLSPAMDLLQLVPSAVADDLDAGATISILVAQPGDIRHLLCSISRRRRRPGVGALHFYLIEQPVEVLARHLLLLQIATDWELPIRQRANLFLE 106
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: W4HAQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAQ6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.180e-21
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   79 LGPHFMWGYTPARDLLEGISNSR------------DEEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            LG H MWG++P  DL EG+S  R             E + VLV  PGDI HVL TI   R+   + +++Y++E+  E LAR LLLLQ+V+DWE P+RQR NTFLE
Sbjct:   13 LGTHGMWGFSPGFDLQEGVSEPRADSNQVDASTSSSEPLCVLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLE 117
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A397AQF6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AQF6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.360e-21
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   94 MWGYTPARDLLEGISNSR------------DEEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            MWG++P  DL EG+S  R             E + VLV  PGDI HVL TI   R+   + +++Y++E+  E LAR LLLLQ+V+DWE P+RQR NTFLE
Sbjct:    1 MWGFSPGFDLQEGVSEPRADSNQVDASTSSSEPLCVLVLSPGDIRHVLTTIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLE 100
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A485KSI8_9STRA (Aste57867_11297 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSI8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.520e-21
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   79 LGPHFMWGYTPARDLLEGISNSRD---------EEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            LG   MWG++PA DL E +S   D         E + VLV  PGDI HVL TI   R+   + +++Y++E+  E LAR LLLLQ+VHDWE P+RQR NTFLE
Sbjct:   11 LGTLGMWGFSPAFDLQEDVSPPADANQALPDAAEPLRVLVLSPGDIRHVLTTIARSRRWKKRPLHIYLYEKAPESLARSLLLLQIVHDWEIPLRQRCNTFLE 112
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BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Match: A0A425DN38_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DN38_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.210e-20
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   94 MWGYTPARDLLEGISNSR------------DEEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLLQVVHDWETPIRQRANTFLE 357
            MWG++P  DL EG+S  R             E + VLV  PGDI HVL TI   R+   + +++Y++E+  E LAR LLLLQ+V+DWE P+RQR NTFLE
Sbjct:    1 MWGFSPGFDLQEGVSEPRADSNQVDASTSSSEPLCVLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLE 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR3_ECTSI3.350e-3666.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4CD75_PYTIN1.460e-2547.22DUF4470 domain-containing protein (Fragment) n=1 T... [more]
A0A2D4CK38_PYTIN8.600e-2346.30Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A5AKG1_9STRA1.390e-2248.57Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A8K1C6J5_PYTOL2.370e-2247.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2BEA7_9STRA5.640e-2247.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4HAQ6_9STRA1.180e-2148.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397AQF6_9STRA5.360e-2148.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KSI8_9STRA5.520e-2150.00Aste57867_11297 protein n=1 Tax=Aphanomyces stella... [more]
A0A425DN38_9STRA3.210e-2048.00Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:514092..514948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D7FKR3
Preferred nameDNAAF3
KEGG koko:K19752
GOsGO:0000226,GO:0001578,GO:0003341,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0034622,GO:0035082,GO:0043933,GO:0044085,GO:0044458,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0120031,GO:0120036
EggNOG free text desc.motile cilium assembly
EggNOG OGs28KT2@1,2QT97@2759
Ec32 ortholog descriptionDynein assembly factor 3, C-terminal domain
Ec32 orthologEc-21_001820.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19313.1prot_S-ischiensis_contig8.19313.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 514092..514948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817273.9741259-CDS-S-ischiensis_contig8:514091..5142471622817273.9741259-CDS-S-ischiensis_contig8:514091..514247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514092..514247 +
1695740986.3637483-CDS-S-ischiensis_contig8:514091..5142471695740986.3637483-CDS-S-ischiensis_contig8:514091..514247Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514092..514247 +
1622817273.9880025-CDS-S-ischiensis_contig8:514410..5145001622817273.9880025-CDS-S-ischiensis_contig8:514410..514500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514411..514500 +
1695740986.3781068-CDS-S-ischiensis_contig8:514410..5145001695740986.3781068-CDS-S-ischiensis_contig8:514410..514500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514411..514500 +
1622817273.9991438-CDS-S-ischiensis_contig8:514837..5149481622817273.9991438-CDS-S-ischiensis_contig8:514837..514948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514838..514948 +
1695740986.3920188-CDS-S-ischiensis_contig8:514837..5149481695740986.3920188-CDS-S-ischiensis_contig8:514837..514948Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 514838..514948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19313.1

>prot_S-ischiensis_contig8.19313.1 ID=prot_S-ischiensis_contig8.19313.1|Name=mRNA_S-ischiensis_contig8.19313.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
GHIDLPTNPEPVGSLGCARMSAMQAGLGPHFMWGYTPARDLLEGISNSRD
EEVNVLVCQPGDIGHVLKTICSRRKHPAQRINLYVWERQIEVLARHLLLL
QVVHDWETPIRQRANTFLE
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mRNA from alignment at S-ischiensis_contig8:514092..514948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19313.1 ID=mRNA_S-ischiensis_contig8.19313.1|Name=mRNA_S-ischiensis_contig8.19313.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=857bp|location=Sequence derived from alignment at S-ischiensis_contig8:514092..514948+ (Schizocladia ischiensis KU_0333)
GGGCACATCGACCTCCCCACGAATCCCGAACCCGTGGGGAGCTTGGGCTG
CGCAAGAATGAGCGCAATGCAAGCCGGCCTTGGGCCCCACTTCATGTGGG
GCTATACACCAGCCAGAGACCTGCTGGAAGGGATCTCCAATAGTCGCGAT
GAGGAGGTGAAACCTCGCAAGTCTTTTGACCGCTCTTCCCTGAACTGCTT
ACCTTGGCAGGGAGACGTTCGCATACATGCTTGAGATTCATCCGGAAGTG
GCCGATTGCCTGTTGACCGATTCGGTCTTTTTGGTCGTGCACCCATCCTT
CCCATTCCCGCGTGTGCAGGTGAACGTGCTTGTGTGCCAGCCAGGGGATA
TTGGCCACGTCTTGAAGACCATCTGCTCGCGCAGGAAGCACCCCGCTCAG
CGCATTAATGTGAGACCAAACGTCCACGTAGCCTTGTCCGTGCCACACAC
ACCCTCGGATGCAGCACAATAATTCCCAAACGCCTATCAGGCACGGCCCA
CAGCGGAACCAGGGCATGGCAATAGCCTGAAACAATGGGCGGGCCCGCCC
CCTGCCAGGGTTGGAGGCGATGAGCGGCAGCCGGAGCCAATTCCCCTTGG
GTTCAATCACTCGGGCCAAACCATCCACACCCGTATCGCGGCCATATTTC
ATACGCGGGCCATAACTCAAGGTGCAAGGTGCTGCCTCGTCCAATAACTG
TTTCTTGGCCCCTCACCCTGGCCCCTCGCCCCTCCTCGCGGGACAGCTAT
ACGTGTGGGAGCGGCAGATAGAGGTCTTGGCACGGCACCTGCTGCTCCTT
CAGGTCGTTCACGACTGGGAGACGCCCATCCGCCAGCGTGCCAACACCTT
CCTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:514092..514948+

>mRNA_S-ischiensis_contig8.19313.1 ID=mRNA_S-ischiensis_contig8.19313.1|Name=mRNA_S-ischiensis_contig8.19313.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig8:514092..514948+ (Schizocladia ischiensis KU_0333)
GGGCACATCGACCTCCCCACGAATCCCGAACCCGTGGGGAGCTTGGGCTG
CGCAAGAATGAGCGCAATGCAAGCCGGCCTTGGGCCCCACTTCATGTGGG
GCTATACACCAGCCAGAGACCTGCTGGAAGGGATCTCCAATAGTCGCGAT
GAGGAGGGGCACATCGACCTCCCCACGAATCCCGAACCCGTGGGGAGCTT
GGGCTGCGCAAGAATGAGCGCAATGCAAGCCGGCCTTGGGCCCCACTTCA
TGTGGGGCTATACACCAGCCAGAGACCTGCTGGAAGGGATCTCCAATAGT
CGCGATGAGGAGGTGAACGTGCTTGTGTGCCAGCCAGGGGATATTGGCCA
CGTCTTGAAGACCATCTGCTCGCGCAGGAAGCACCCCGCTCAGCGCATTA
ATGTGAACGTGCTTGTGTGCCAGCCAGGGGATATTGGCCACGTCTTGAAG
ACCATCTGCTCGCGCAGGAAGCACCCCGCTCAGCGCATTAATCTATACGT
GTGGGAGCGGCAGATAGAGGTCTTGGCACGGCACCTGCTGCTCCTTCAGG
TCGTTCACGACTGGGAGACGCCCATCCGCCAGCGTGCCAACACCTTCCTG
GAGCTATACGTGTGGGAGCGGCAGATAGAGGTCTTGGCACGGCACCTGCT
GCTCCTTCAGGTCGTTCACGACTGGGAGACGCCCATCCGCCAGCGTGCCA
ACACCTTCCTGGAG
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