mRNA_S-ischiensis_contig8.19291.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: D7G3D3_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI) HSP 1 Score: 145 bits (365), Expect = 6.630e-37 Identity = 83/158 (52.53%), Postives = 100/158 (63.29%), Query Frame = 1
Query: 4 RDAPLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGDPLARDASALLPSPGGGLGRHGGSPVWPVGQRRGLHTVLTSCLLDAL--ASAHATGAEAVAAALVGHAAPGDRG 471
RD+PL +L+ DP++AKPLR LH L MRLLVDQ FKRDFAL FARLY+ L+ LYC GVG S++SIFGFSVQ FTTPSLVRLL D A SA+LP+P HG VW + GL +L L+ + A G E A++ PG RG
Sbjct: 525 RDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPD-----HGVPKVWRFSETPGLLALLAKALVRTMWDAGCRGCGREGGREAVIAAQQPGPRG 677
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE) HSP 1 Score: 144 bits (364), Expect = 9.800e-37 Identity = 83/158 (52.53%), Postives = 102/158 (64.56%), Query Frame = 1
Query: 4 RDAPLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGDPLARDASALLPSPGGGLGRHGGSPVWPVGQRRGLHTVLTSCLLDAL--ASAHATGAEAVAAALVGHAAPGDRG 471
RD+PLV+L+ DP++AKPLR LH L MRLLVDQ FKRDFAL FARLY+ L+ LYC GVG S++SIFGFSVQ FTTPSLVRLL D A SA+LP+P G+ + VW + GL +L L+ + A G E A++ PG RG
Sbjct: 158 RDSPLVVLVASDPMIAKPLRLCLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAATPSAILPNPDLGVPK-----VWRFSETPGLLALLAEALVRTMRDAGCRGCGREGGREAVIAAQQPGPRG 310
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.600e-23 Identity = 66/131 (50.38%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 13 PLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGDPLARDASALLPSPGGGLGRHGGSPVWPVGQRRGLHTVLTSCLLDALASA 405
PL+LL+ DPL+ K R HAL+MRLL D FKR FA F R ++ L L+ GVGTS +S+FGFSVQIFTTPSLV+LL D + DAS L + L G SP+ P G +G+ L CLLD+ +A
Sbjct: 432 PLLLLMLADPLLLKQQRSAAHALFMRLLTDAAFKRAFAAAFGRAFRALHALFARGVGTSSESLFGFSVQIFTTPSLVQLL-DGGSGDASELCSA----LVEAGKSPL-PEGSAQGM---LVQCLLDSFRTA 553
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A7S2PF59_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PF59_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.070e-13 Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 10 APLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVF-ARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGD 258
+PL+L+L DP K LR LH L++ LL + FK FA A +Y+P S L+C G+GT D++ GF+VQ+FTT SL++ LG+
Sbjct: 987 SPLLLILLLDPYSPKLLRSNLHRLFLSLLTNPRFKSRFAASLGAVVYRPTSNLFCAGIGTEADTLLGFTVQLFTTGSLIKALGN 1070
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.130e-13 Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 4 RDAPLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGDPLARDASALLPSPG 300
+ + L LLL D + LR L ALY+ LLVD FK A R Y L+ LY GVGT +DS+F FSVQ++TTPS+VR L + + LL SPG
Sbjct: 435 QSSRLALLLVADFFLTNQLRTELQALYLHLLVDAHFKPALARSLTRCYALLNSLYSRGVGTQDDSLFSFSVQLYTTPSIVRWLAT--STEDEELLGSPG 531
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: B8C846_THAPS (E3 ubiquitin-protein ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C846_THAPS) HSP 1 Score: 76.3 bits (186), Expect = 7.210e-13 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 10 APLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVF-ARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGD 258
+P++ LL DP +K LR L L++ LL D FK FA A +Y+P S L+C GVGT D++ GF+VQ+FTT SLV+ LG+
Sbjct: 1086 SPVLTLLLLDPYASKNLRSCLQRLFLSLLTDARFKSRFAASLGAVVYRPTSTLFCAGVGTDADTLLGFTVQLFTTGSLVKALGN 1169
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A067CAR2_SAPPC (E3 ubiquitin-protein ligase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CAR2_SAPPC) HSP 1 Score: 71.6 bits (174), Expect = 2.760e-11 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 13 PLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGD 258
P+V LL ++ K + LH+ Y+ L+ D+ K FAL + +YQ + R Y GVGT +++FG SVQIFTTPS+V L D
Sbjct: 353 PIVELLTATSVLPKAIVMALHSAYLHLMGDRTLKWQFALFYVEVYQLVMREYLCGVGTKNEAMFGLSVQIFTTPSIVPQLVD 434
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: T0SBQ0_SAPDV (E3 ubiquitin-protein ligase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBQ0_SAPDV) HSP 1 Score: 70.9 bits (172), Expect = 5.100e-11 Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 13 PLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGD 258
P+V LL ++ K + LH+ Y+ L+ D+ K FAL + +YQ + R Y GVGT +++FG SVQIFTTPS+V L D
Sbjct: 351 PIVELLTATSVLPKAIVTALHSAYLNLMGDRTLKWQFALFYVEVYQLVMREYFCGVGTKNEAMFGLSVQIFTTPSIVPQLVD 432
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A7S3JTU1_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTU1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.480e-11 Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 13 PLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLLGDPL 264
PL +++ DPL ++ +R H L +RL+VD + Y+ L+RL+ GVG ED+IF SVQ+FTTPSLVR D L
Sbjct: 382 PLAIMIACDPLCSRAVRHAKHELLLRLVVDLVAREAVRDALLACYRYLNRLFANGVGFLEDTIFALSVQVFTTPSLVRSSVDAL 465
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Match: A0A1V9YDN6_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDN6_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.740e-10 Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 13 PLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQPLSRLYCGGVGTSEDSIFGFSVQIFTTPSLVRLL 252
P+V LL ++ KP+ GL Y+ ++ D+ K FAL + +YQ + R + GVGT +++FG SVQIFTTPS+V L
Sbjct: 351 PIVELLTASSVLPKPIVLGLQQAYLNVMGDRALKWQFALFYVEVYQLVMREFFCGVGTKNEAMFGLSVQIFTTPSIVPQL 430 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19291.1 >prot_S-ischiensis_contig8.19291.1 ID=prot_S-ischiensis_contig8.19291.1|Name=mRNA_S-ischiensis_contig8.19291.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp LRDAPLVLLLGGDPLVAKPLRQGLHALYMRLLVDQGFKRDFALVFARLYQback to top mRNA from alignment at S-ischiensis_contig8:366211..368157- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19291.1 ID=mRNA_S-ischiensis_contig8.19291.1|Name=mRNA_S-ischiensis_contig8.19291.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1947bp|location=Sequence derived from alignment at S-ischiensis_contig8:366211..368157- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:366211..368157- >mRNA_S-ischiensis_contig8.19291.1 ID=mRNA_S-ischiensis_contig8.19291.1|Name=mRNA_S-ischiensis_contig8.19291.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig8:366211..368157- (Schizocladia ischiensis KU_0333)back to top |