mRNA_S-ischiensis_contig8.19275.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19275.1
Unique NamemRNA_S-ischiensis_contig8.19275.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:302869..304491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003040.1
Exons2
Model size1338
Cds size1338
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817255.198271-CDS-S-ischiensis_contig8:302868..3040021622817255.198271-CDS-S-ischiensis_contig8:302868..304002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 302869..304002 -
1695740973.3342519-CDS-S-ischiensis_contig8:302868..3040021695740973.3342519-CDS-S-ischiensis_contig8:302868..304002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 302869..304002 -
1622817255.2104106-CDS-S-ischiensis_contig8:304287..3044911622817255.2104106-CDS-S-ischiensis_contig8:304287..304491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 304288..304491 -
1695740973.3450782-CDS-S-ischiensis_contig8:304287..3044911695740973.3450782-CDS-S-ischiensis_contig8:304287..304491Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 304288..304491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19275.1prot_S-ischiensis_contig8.19275.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 302869..304491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19275.1

>prot_S-ischiensis_contig8.19275.1 ID=prot_S-ischiensis_contig8.19275.1|Name=mRNA_S-ischiensis_contig8.19275.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=446bp
AVAQESTDERHMGEFEDDTFPSDEAEPLLVGKRPPRRSAGYIAQFPGRLV
DLVSFYVVAIVLSILLAAAQPLLYPTTPSVVLMVPVFLAQLCLMWEVFYG
CRAIDRASKKLKPKRRPKGGAATATAGAAPAGGGGSSSSGSDTAPSATIV
PIAAPDSRSYEKQQQQQQQQREGAPRPRRRAARKPAQAAAALALMRFWYQ
MWALMTVSAFLLGLFEAFLAARLLGVPGDALTTSIVAAPVLTVLCGYVAH
GLLFRDQGRMALVIWVLALAFASLLAAKLDAQDMGLVVEGAALIPWMSVF
APLWTLFGLLEATFLRALWRQRVSRQLAMAPRQEAAAAGVAVGLACLTTA
SFFICKSLLLDSGGWDGMGAGAYPACMTLAAAGVAAAAFPFRALCLEAVG
KRFLPKESTTPLPLEFRAEEEGWVPDKAAEVTERLCLIGQVRRRGK
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mRNA from alignment at S-ischiensis_contig8:302869..304491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19275.1 ID=mRNA_S-ischiensis_contig8.19275.1|Name=mRNA_S-ischiensis_contig8.19275.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1623bp|location=Sequence derived from alignment at S-ischiensis_contig8:302869..304491- (Schizocladia ischiensis KU_0333)
GCGGTAGCCCAGGAGTCGACCGACGAGAGACACATGGGCGAGTTCGAAGA
TGACACATTCCCTAGCGACGAGGCTGAGCCCTTGCTCGTCGGGAAACGCC
CCCCGCGCCGGAGCGCCGGATACATCGCCCAGTTCCCCGGGAGGCTTGTG
GATCTGGTCTCCTTCTATGTAGTGGCTATTGTGCTGTCCATTTTGCTGGC
TGCGGTGAGTTTTCTGGCAGTAAGCATTGCGGTCCCAGCGACCGGCGTGT
CTCCAGCTGCGTGTCCTGCGAGCAGTTTCGGGAGCTCGCTTTTCTCTGTG
TGATTTGGCTGATGAGCTCGTGCAAGCAGTCGCGATTCACTGTGTGCTTA
AGCCGTTGGCCACCCGGAGTAAGTCCTCCCAACCGGTTTTTCACTCCCTT
GCAGAGCGGCCAAGGGCACTGCTCTATCCCCATGTCCATTTGCGAGTGCG
TCCAGCGCTAACAGAGTGCACTTGTTCCCTCCTGTGCAGGCCCAGCCGCT
TTTGTATCCGACCACCCCCAGCGTGGTGCTCATGGTACCAGTCTTCTTGG
CACAGCTGTGTCTCATGTGGGAAGTTTTCTACGGGTGCAGGGCCATCGAC
CGGGCCTCGAAGAAACTGAAGCCCAAGCGAAGGCCAAAGGGTGGTGCCGC
AACCGCGACCGCTGGCGCCGCCCCCGCCGGCGGCGGCGGCAGCAGCAGCA
GCGGCAGCGACACCGCACCCTCCGCCACTATCGTCCCAATCGCTGCGCCT
GACAGCCGGTCATACGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCGTGA
GGGCGCGCCGCGGCCCCGCCGCCGGGCGGCCCGCAAGCCGGCGCAGGCGG
CCGCGGCCCTCGCCCTGATGCGCTTCTGGTACCAGATGTGGGCCCTCATG
ACGGTTTCGGCCTTCCTGCTGGGCCTCTTCGAGGCCTTCCTGGCGGCGCG
GCTGCTGGGCGTCCCCGGGGACGCCCTGACGACGAGCATCGTGGCCGCCC
CGGTCCTCACGGTGCTCTGCGGGTACGTAGCCCACGGACTCCTGTTCCGC
GACCAGGGCCGCATGGCCCTCGTCATCTGGGTCCTGGCCCTGGCCTTCGC
CTCGCTGCTGGCCGCCAAGCTCGACGCCCAGGACATGGGTCTCGTCGTCG
AGGGGGCCGCCCTCATCCCCTGGATGTCCGTGTTCGCCCCGCTCTGGACG
CTCTTCGGCCTCCTCGAGGCCACCTTCCTTAGAGCCCTCTGGCGGCAGCG
CGTCTCCCGCCAGCTGGCCATGGCGCCCCGGCAGGAGGCGGCGGCTGCCG
GCGTCGCCGTCGGCCTGGCCTGCCTCACCACCGCGAGCTTTTTTATCTGC
AAGTCGCTGCTCCTCGACAGCGGGGGCTGGGACGGCATGGGCGCCGGGGC
CTACCCGGCCTGCATGACCCTCGCCGCCGCCGGCGTCGCCGCCGCCGCCT
TCCCCTTCCGCGCCCTCTGCCTCGAGGCCGTGGGGAAGCGCTTCCTCCCC
AAGGAGAGCACCACCCCGCTTCCCTTAGAGTTCCGCGCGGAGGAGGAGGG
CTGGGTGCCCGACAAGGCCGCCGAGGTGACCGAGAGGCTATGCCTCATCG
GGCAGGTGCGGCGGCGGGGGAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:302869..304491-

>mRNA_S-ischiensis_contig8.19275.1 ID=mRNA_S-ischiensis_contig8.19275.1|Name=mRNA_S-ischiensis_contig8.19275.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2676bp|location=Sequence derived from alignment at S-ischiensis_contig8:302869..304491- (Schizocladia ischiensis KU_0333)
GCGGTAGCCCAGGAGTCGACCGACGAGAGACACATGGGCGAGTTCGAAGA
TGACACATTCCCTAGCGACGAGGCTGAGCCCTTGCTCGTCGGGAAACGCC
CCCCGCGCCGGAGCGCCGGATACATCGCCCAGTTCCCCGGGAGGCTTGTG
GATCTGGTCTCCTTCTATGTAGTGGCTATTGTGCTGTCCATTTTGCTGGC
TGCGGCGGTAGCCCAGGAGTCGACCGACGAGAGACACATGGGCGAGTTCG
AAGATGACACATTCCCTAGCGACGAGGCTGAGCCCTTGCTCGTCGGGAAA
CGCCCCCCGCGCCGGAGCGCCGGATACATCGCCCAGTTCCCCGGGAGGCT
TGTGGATCTGGTCTCCTTCTATGTAGTGGCTATTGTGCTGTCCATTTTGC
TGGCTGCGGCCCAGCCGCTTTTGTATCCGACCACCCCCAGCGTGGTGCTC
ATGGTACCAGTCTTCTTGGCACAGCTGTGTCTCATGTGGGAAGTTTTCTA
CGGGTGCAGGGCCATCGACCGGGCCTCGAAGAAACTGAAGCCCAAGCGAA
GGCCAAAGGGTGGTGCCGCAACCGCGACCGCTGGCGCCGCCCCCGCCGGC
GGCGGCGGCAGCAGCAGCAGCGGCAGCGACACCGCACCCTCCGCCACTAT
CGTCCCAATCGCTGCGCCTGACAGCCGGTCATACGAGAAGCAGCAGCAGC
AGCAGCAGCAGCAGCGTGAGGGCGCGCCGCGGCCCCGCCGCCGGGCGGCC
CGCAAGCCGGCGCAGGCGGCCGCGGCCCTCGCCCTGATGCGCTTCTGGTA
CCAGATGTGGGCCCTCATGACGGTTTCGGCCTTCCTGCTGGGCCTCTTCG
AGGCCTTCCTGGCGGCGCGGCTGCTGGGCGTCCCCGGGGACGCCCTGACG
ACGAGCATCGTGGCCGCCCCGGTCCTCACGGTGCTCTGCGGGTACGTAGC
CCACGGACTCCTGTTCCGCGACCAGGGCCGCATGGCCCTCGTCATCTGGG
TCCTGGCCCTGGCCTTCGCCTCGCTGCTGGCCGCCAAGCTCGACGCCCAG
GACATGGGTCTCGTCGTCGAGGGGGCCGCCCTCATCCCCTGGATGTCCGT
GTTCGCCCCGCTCTGGACGCTCTTCGGCCTCCTCGAGGCCACCTTCCTTA
GAGCCCTCTGGCGGCAGCGCGTCTCCCGCCAGCTGGCCATGGCGCCCCGG
CAGGAGGCGGCGGCTGCCGGCGTCGCCGTCGGCCTGGCCTGCCTCACCAC
CGCGAGCTTTTTTATCTGCAAGTCGCTGCTCCTCGACAGCGGGGGCTGGG
ACGGCATGGGCGCCGGGGCCTACCCGGCCTGCATGACCCTCGCCGCCGCC
GGCGTCGCCGCCGCCGCCTTCCCCTTCCGCGCCCTCTGCCTCGAGGCCGT
GGGGAAGCGCTTCCTCCCCAAGGAGAGCACCACCCCGCTTCCCTTAGAGT
TCCGCGCGGAGGAGGAGGGCTGGGTGCCCGACAAGGCCGCCGAGGTGACC
GAGAGGCTATGCCTCATCGGGCAGGTGCGGCGGCGGGGGAAGGCCCAGCC
GCTTTTGTATCCGACCACCCCCAGCGTGGTGCTCATGGTACCAGTCTTCT
TGGCACAGCTGTGTCTCATGTGGGAAGTTTTCTACGGGTGCAGGGCCATC
GACCGGGCCTCGAAGAAACTGAAGCCCAAGCGAAGGCCAAAGGGTGGTGC
CGCAACCGCGACCGCTGGCGCCGCCCCCGCCGGCGGCGGCGGCAGCAGCA
GCAGCGGCAGCGACACCGCACCCTCCGCCACTATCGTCCCAATCGCTGCG
CCTGACAGCCGGTCATACGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCG
TGAGGGCGCGCCGCGGCCCCGCCGCCGGGCGGCCCGCAAGCCGGCGCAGG
CGGCCGCGGCCCTCGCCCTGATGCGCTTCTGGTACCAGATGTGGGCCCTC
ATGACGGTTTCGGCCTTCCTGCTGGGCCTCTTCGAGGCCTTCCTGGCGGC
GCGGCTGCTGGGCGTCCCCGGGGACGCCCTGACGACGAGCATCGTGGCCG
CCCCGGTCCTCACGGTGCTCTGCGGGTACGTAGCCCACGGACTCCTGTTC
CGCGACCAGGGCCGCATGGCCCTCGTCATCTGGGTCCTGGCCCTGGCCTT
CGCCTCGCTGCTGGCCGCCAAGCTCGACGCCCAGGACATGGGTCTCGTCG
TCGAGGGGGCCGCCCTCATCCCCTGGATGTCCGTGTTCGCCCCGCTCTGG
ACGCTCTTCGGCCTCCTCGAGGCCACCTTCCTTAGAGCCCTCTGGCGGCA
GCGCGTCTCCCGCCAGCTGGCCATGGCGCCCCGGCAGGAGGCGGCGGCTG
CCGGCGTCGCCGTCGGCCTGGCCTGCCTCACCACCGCGAGCTTTTTTATC
TGCAAGTCGCTGCTCCTCGACAGCGGGGGCTGGGACGGCATGGGCGCCGG
GGCCTACCCGGCCTGCATGACCCTCGCCGCCGCCGGCGTCGCCGCCGCCG
CCTTCCCCTTCCGCGCCCTCTGCCTCGAGGCCGTGGGGAAGCGCTTCCTC
CCCAAGGAGAGCACCACCCCGCTTCCCTTAGAGTTCCGCGCGGAGGAGGA
GGGCTGGGTGCCCGACAAGGCCGCCGAGGTGACCGAGAGGCTATGCCTCA
TCGGGCAGGTGCGGCGGCGGGGGAAG
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