mRNA_S-ischiensis_contig8.19272.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19272.1
Unique NamemRNA_S-ischiensis_contig8.19272.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:284477..286408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D8LEJ1
KEGG koko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19272.1prot_S-ischiensis_contig8.19272.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 284477..286408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817271.7473438-CDS-S-ischiensis_contig8:284476..2847051622817271.7473438-CDS-S-ischiensis_contig8:284476..284705Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 284477..284705 -
1695740984.647643-CDS-S-ischiensis_contig8:284476..2847051695740984.647643-CDS-S-ischiensis_contig8:284476..284705Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 284477..284705 -
1622817271.7577674-CDS-S-ischiensis_contig8:285803..2858771622817271.7577674-CDS-S-ischiensis_contig8:285803..285877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 285804..285877 -
1695740984.6596417-CDS-S-ischiensis_contig8:285803..2858771695740984.6596417-CDS-S-ischiensis_contig8:285803..285877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 285804..285877 -
1622817271.76792-CDS-S-ischiensis_contig8:286324..2864081622817271.76792-CDS-S-ischiensis_contig8:286324..286408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 286325..286408 -
1695740984.6699584-CDS-S-ischiensis_contig8:286324..2864081695740984.6699584-CDS-S-ischiensis_contig8:286324..286408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 286325..286408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19272.1

>prot_S-ischiensis_contig8.19272.1 ID=prot_S-ischiensis_contig8.19272.1|Name=mRNA_S-ischiensis_contig8.19272.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MGVGMSQGRSGSSGYGGHVDACVQMRRRVDATKLHLRGQKFRFDLDVAAM
EGRATEGEVQRAGCPYYRGVVTAEYARLTHSAARPAVGLAGGEDGITDVE
DLVSLGLNPRGFLDRRRRQRRRRQGGKEG
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mRNA from alignment at S-ischiensis_contig8:284477..286408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19272.1 ID=mRNA_S-ischiensis_contig8.19272.1|Name=mRNA_S-ischiensis_contig8.19272.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1932bp|location=Sequence derived from alignment at S-ischiensis_contig8:284477..286408- (Schizocladia ischiensis KU_0333)
ATGGGGGTGGGGATGAGCCAGGGCAGGAGCGGGAGCTCCGGCTACGGGGG
CCACGTGGACGCCTGCGTGCAGATGCGGAGGAGGGTGCGTCTCCGGATGG
ATGAAAAAGTGCTTTGTTCGCTTCCTCGTTGTATCACGGATTTGTTCATT
CCCTCGCTCGCGTGGGTGGGGCCGGGCCGCCTCTGTTGGCCGAGTTTGTG
GTACTGTAGGCGCATCCCTTTCTCTCGACCCCTAGAGTACCTACGCACTG
CAAGTACACGCGGCGTCATTCGTTCGCGGACGCCTGCCTTCGCCTCTGGT
GCGGGGGAGCAGCGGTGCGGTGGTTGCTACATAGATCGTACGCGGAAACT
CAGGATTGTACGTGCGTGTGTTCGTCAAGAGCACCTTGCAGTTGCTGTGC
GCTTGGCGGCCCTTGAAACTCTTACGAGTTGTGGGCCCGTGTGTTTGTGT
GTCGTCGAGAAATCCTGCCGCTGACCTGGCCTCACTGACCGGACCGGGGG
GGCGGGGGGGGGGGGGTACCGAAAACGACAGGTGGATGCAACCAAGCTCC
ATCTTCGGGGGCAGAAGTTCCGTTTCGACCTCGACGTGGCCGCCATGGAG
GGAAGGTGAGAGGCTAAATTGCCGCTAGAGTACCACTAGACGAGCGCTTA
ACATTCATGGCTCTGCCAGGGGAGGGAGGAGTCCTGCTCCGTCTCGACCG
AGGCGCGTGGTCAATGTTCTCGAGACTATGACAAGCACAGCGTGAGTACA
TATACATAGTACTGCGACACACCGTTGCTTACTACCTACTGTAGCAGACC
TCTGACCGGGCCGCTTTTTTTTTTTTTTGGGGCGTTTCGGTCGCTGGTTG
TTTTTATTTTTCCAGTTTGGAGATATCCCACGCACAGTCCAGTCCAGTAC
AGCACGGCACATCAGCGAGCGGCTGGTGACGATGTCCCCATCGCGATGGC
GGGCGAGTTGATTCGCCGTCACAACAGAATGAAAAGTGTGGGGCGGCCAA
CCTGCCGCCCGGGCAGGGTCTGAGCTCCGCTGCGTTGCCAGCCGCTTGCC
AGCGGGCTTGTCGCTGTATACAGCAGCGCAGGTAGCAGCCCAGCCATACG
TACCTAGTCTGTGATGTGATTCCATGCGGCGCGTGCCGTGTGCTGCCTTG
TTGTGTTGTAGAGTGCTATTATTATCGGGAACAAGAGTGTACTGCAAAAC
GTTGTACTCATACTACACCTCGCCCCGTGTTGTTCCTGCTAATACTGCTC
TGTCGTCAACGCGTGGTCGAAAAGCACAATGTGAGTACGTATACTGCTCT
GCAGCAGCGGCGGCACTACTGCACTGCGTGTGCTGCACTTGTGTGTATAT
ACTACTGTTTTCGCTAGTACTTCGAAGTAGTAGTTAGACATCACATCGTC
CACCCTCGGTTAGCTGCTTTGGCTACCCGCACCTGCATTGCGGCGCCCAG
TCCCGTTAGCTGCCACTGAACCGTGTCGCGTGGCAAACTACCTACCGTAC
AGTACAGTACAGTACAGTACTCGTACAGTACAGTACAGTACAGGAGTCGA
GTACCGTACCGTGCCGTAATGTACAATGCTTCCCCGAGCGCGTACATACC
TACGCTCCGGTCGGACACACACCAAACCCATGCCCCCCCCCCCCCCGCCT
CCCACCGCCTCCCTACCCACCATCTCCCCGCCTCCCACCGCCTGCCTACC
CAGGGCGACGGAGGGAGAGGTTCAGAGAGCCGGGTGCCCCTACTACCGCG
GCGTGGTCACCGCCGAGTACGCACGCCTTACCCACTCGGCGGCCCGCCCG
GCCGTGGGCCTTGCGGGGGGCGAGGACGGGATCACCGACGTTGAGGACCT
CGTGTCCCTGGGTCTCAACCCGCGGGGGTTTCTCGACAGGCGACGGCGGC
AGCGGCGGCGGCGGCAGGGGGGGAAGGAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:284477..286408-

>mRNA_S-ischiensis_contig8.19272.1 ID=mRNA_S-ischiensis_contig8.19272.1|Name=mRNA_S-ischiensis_contig8.19272.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig8:284477..286408- (Schizocladia ischiensis KU_0333)
ATGGGGGTGGGGATGAGCCAGGGCAGGAGCGGGAGCTCCGGCTACGGGGG
CCACGTGGACGCCTGCGTGCAGATGCGGAGGAGGATGGGGGTGGGGATGA
GCCAGGGCAGGAGCGGGAGCTCCGGCTACGGGGGCCACGTGGACGCCTGC
GTGCAGATGCGGAGGAGGGTGGATGCAACCAAGCTCCATCTTCGGGGGCA
GAAGTTCCGTTTCGACCTCGACGTGGCCGCCATGGAGGGAAGGTGGATGC
AACCAAGCTCCATCTTCGGGGGCAGAAGTTCCGTTTCGACCTCGACGTGG
CCGCCATGGAGGGAAGGGCGACGGAGGGAGAGGTTCAGAGAGCCGGGTGC
CCCTACTACCGCGGCGTGGTCACCGCCGAGTACGCACGCCTTACCCACTC
GGCGGCCCGCCCGGCCGTGGGCCTTGCGGGGGGCGAGGACGGGATCACCG
ACGTTGAGGACCTCGTGTCCCTGGGTCTCAACCCGCGGGGGTTTCTCGAC
AGGCGACGGCGGCAGCGGCGGCGGCGGCAGGGGGGGAAGGAGGGGGGCGA
CGGAGGGAGAGGTTCAGAGAGCCGGGTGCCCCTACTACCGCGGCGTGGTC
ACCGCCGAGTACGCACGCCTTACCCACTCGGCGGCCCGCCCGGCCGTGGG
CCTTGCGGGGGGCGAGGACGGGATCACCGACGTTGAGGACCTCGTGTCCC
TGGGTCTCAACCCGCGGGGGTTTCTCGACAGGCGACGGCGGCAGCGGCGG
CGGCGGCAGGGGGGGAAGGAGGGG
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