mRNA_S-ischiensis_contig8.19259.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19259.1
Unique NamemRNA_S-ischiensis_contig8.19259.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:243886..245027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19259.1prot_S-ischiensis_contig8.19259.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 243886..245020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817254.9084194-CDS-S-ischiensis_contig8:243885..2439241622817254.9084194-CDS-S-ischiensis_contig8:243885..243924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 243886..243924 -
1695740973.1287339-CDS-S-ischiensis_contig8:243885..2439241695740973.1287339-CDS-S-ischiensis_contig8:243885..243924Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 243886..243924 -
1622817254.9195747-CDS-S-ischiensis_contig8:244789..2450201622817254.9195747-CDS-S-ischiensis_contig8:244789..245020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 244790..245020 -
1695740973.1393106-CDS-S-ischiensis_contig8:244789..2450201695740973.1393106-CDS-S-ischiensis_contig8:244789..245020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 244790..245020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817254.932364-UTR-S-ischiensis_contig8:245020..2450271622817254.932364-UTR-S-ischiensis_contig8:245020..245027Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 245021..245027 -
1695740973.1507053-UTR-S-ischiensis_contig8:245020..2450271695740973.1507053-UTR-S-ischiensis_contig8:245020..245027Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 245021..245027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19259.1

>prot_S-ischiensis_contig8.19259.1 ID=prot_S-ischiensis_contig8.19259.1|Name=mRNA_S-ischiensis_contig8.19259.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
MCAPDRPDPPVSPPPNVTVGALVSGIAFILVSVVDPGAVAADGLAFEVLV
GQTGGQIRTKHKRLSDFQALAAELAGKVFPHVDLPSEVVA
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mRNA from alignment at S-ischiensis_contig8:243886..245027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19259.1 ID=mRNA_S-ischiensis_contig8.19259.1|Name=mRNA_S-ischiensis_contig8.19259.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1142bp|location=Sequence derived from alignment at S-ischiensis_contig8:243886..245027- (Schizocladia ischiensis KU_0333)
CTATCTCATGTGCGCGCCAGATAGACCGGACCCCCCTGTGAGCCCCCCCC
CGAACGTGACGGTGGGGGCACTTGTGTCAGGGATCGCCTTCATACTGGTG
TCAGTGGTAGATCCCGGCGCCGTGGCGGCCGATGGGTTGGCCTTCGAGGT
GCTGGTGGGTCAGACTGGCGGGCAGATACGCACCAAGCACAAGCGCCTGA
GCGACTTCCAGGCCCTGGCGGCGGAGTTGGCTGGCAAGGTGTGGGCAAAT
CGCGTGTACCTGCGCAGTTGAACCGTAGTTCCGGTACATGTACTCTGCAT
GAGTTGACGAACACGCACAAGTTGTTGGTTTGACTGTGCAGCAAGTTTGG
GCAGCTGCTCTGCTGCTCCTTGAAAGGACAATTGCGTCTCTTGCTCGAGT
GCTGCTAGTACTGGCTACCGTCCTGTACTACGTGGCGTATACAGTAGATT
CGACAGCAGCACAAGAGCTATCTACGGTACTACAGAAGTAGCTCCAGCAC
TTGGGCAGATCATGAGGACATGGTGAGCAGTTTCATATACCCAAGCACAC
CTTCCGCAACCAAGTACTTCGAAGTGCACGGCCCTGTGGTGGTCAGTCGG
GTCAGACATACATCTACACCGATTCACGACCGGCACATGGATGCAGGCAC
CGTGGTGTGCTGCACACGATCCGTAGCTGCCCAAGCGCCTGGTTGTCCTC
ACCCCCCCCGGAGTGGGGAGAGAACCGTGTTTCCCGTAAACAGGGCCGGA
GTCCGCCTACCTACAGTAGTGTACTCGAACGGTGTGTGCGGTACTGTACA
GTACTGAAAATATATTTTTGCATATGCACTACGTAGTAATTACTTCGAAG
TAGATGCCAACATACACTTAGAGATGTTGTACAGAGCTGCATACTAGAAA
ATGCCATCTGGTGGACCAAGTGGGGCTCGATTACATAGTACCTCTTCGAA
GCAAAGTAGCACCAAGTACTTCGTACTTTGAAGTACGTAGTACTTGAAGT
GCCTCAAGTACAAATACTTAGTCGACCCCCCCGTCCCTCCACTCCCCCAT
TTCTTCTGCTCCTCCCCCCCCCGCCTCCTTCCCCCCTCCTCCTGGGCGGG
CAGGTATTCCCCCATGTGGACCTCCCGTCGGAGGTAGTGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:243886..245027-

>mRNA_S-ischiensis_contig8.19259.1 ID=mRNA_S-ischiensis_contig8.19259.1|Name=mRNA_S-ischiensis_contig8.19259.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig8:243886..245027- (Schizocladia ischiensis KU_0333)
ATGTGCGCGCCAGATAGACCGGACCCCCCTGTGAGCCCCCCCCCGAACGT
GACGGTGGGGGCACTTGTGTCAGGGATCGCCTTCATACTGGTGTCAGTGG
TAGATCCCGGCGCCGTGGCGGCCGATGGGTTGGCCTTCGAGGTGCTGGTG
GGTCAGACTGGCGGGCAGATACGCACCAAGCACAAGCGCCTGAGCGACTT
CCAGGCCCTGGCGGCGGAGTTGGCTGGCAAGATGTGCGCGCCAGATAGAC
CGGACCCCCCTGTGAGCCCCCCCCCGAACGTGACGGTGGGGGCACTTGTG
TCAGGGATCGCCTTCATACTGGTGTCAGTGGTAGATCCCGGCGCCGTGGC
GGCCGATGGGTTGGCCTTCGAGGTGCTGGTGGGTCAGACTGGCGGGCAGA
TACGCACCAAGCACAAGCGCCTGAGCGACTTCCAGGCCCTGGCGGCGGAG
TTGGCTGGCAAGGTATTCCCCCATGTGGACCTCCCGTCGGAGGTAGTGGC
CGTATTCCCCCATGTGGACCTCCCGTCGGAGGTAGTGGCC
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